mRNA_H-elongata_contig1930.5340.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1930.5340.1
Unique NamemRNA_H-elongata_contig1930.5340.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: D8LRT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRT4_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.580e-38
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1
Query:    1 MSDVNELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG 207
            MSDVNELLI PLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKL+HIPINNI+M G
Sbjct:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMAG 69          
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: A0A835YV57_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV57_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.080e-36
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 MSDVNELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG 207
            MSDVNELLIIPLQ+F KDS+ L+KKCTKPDRKEFM VAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG
Sbjct:    1 MSDVNELLIIPLQQFFKDSVQLVKKCTKPDRKEFMIVAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG 69          
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: W7U037_9STRA (Transport protein sec61 subunit gamma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U037_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.610e-31
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 MSDVNELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG 207
            MSDVN  +I PL+KF+KDS HL+KKCTKPDRKEF ++A AT+VGFL+MGFIGFFVKLIHIPINNI++GG
Sbjct:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92          
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: K3X8N9_GLOUD (Uncharacterized protein n=6 Tax=Oomycota TaxID=4762 RepID=K3X8N9_GLOUD)

HSP 1 Score: 110 bits (274), Expect = 3.000e-30
Identity = 52/69 (75.36%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 MSDVNELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG 207
            MSDVN L+  PLQ+F K+S+HLIKKCTKPDRKEF ++A AT+VGFL+MGFIGFFVKL+HIPINNI++GG
Sbjct:    1 MSDVNTLVFQPLQQFFKNSVHLIKKCTKPDRKEFTRIAAATSVGFLMMGFIGFFVKLVHIPINNILVGG 69          
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: W4FU52_9STRA (Protein transporter Sec61 subunit gamma n=8 Tax=Oomycota TaxID=4762 RepID=W4FU52_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.050e-30
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 1
Query:    1 MSDVNELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG 207
            MSDVN L+I PL++F+K+S+HL+KKCTKPDRKEF ++A AT VGFL+MGFIGFFVKL+HIPINNI++GG
Sbjct:    1 MSDVNALVIEPLKQFAKNSVHLVKKCTKPDRKEFARIAGATGVGFLLMGFIGFFVKLVHIPINNILVGG 69          
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: A0A067CAZ0_SAPPC (Translocase SEC61 complex gamma subunit n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAZ0_SAPPC)

HSP 1 Score: 108 bits (270), Expect = 1.190e-29
Identity = 49/69 (71.01%), Postives = 64/69 (92.75%), Query Frame = 1
Query:    1 MSDVNELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG 207
            MSDVN ++I PL+ F+K+S+HL+KKCTKPDRKEF ++A AT++GFL+MGFIGFFVKL+HIPINNI++GG
Sbjct:    1 MSDVNAIVIEPLKAFAKNSIHLVKKCTKPDRKEFTRIAGATSIGFLMMGFIGFFVKLVHIPINNILVGG 69          
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: A0A1Z5K738_FISSO (Protein transport protein SEC61 subunit gamma and related proteins n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K738_FISSO)

HSP 1 Score: 107 bits (267), Expect = 3.500e-29
Identity = 47/64 (73.44%), Postives = 62/64 (96.88%), Query Frame = 1
Query:   16 ELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG 207
            E+L+ PL++F+KDS+HL++KCTKPDRKEF Q+A+AT++GFL+MGFIGFFVKLIHIPINNI++GG
Sbjct:    9 EVLVEPLRQFAKDSLHLVQKCTKPDRKEFTQIARATSIGFLIMGFIGFFVKLIHIPINNILVGG 72          
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: M4BH76_HYAAE (Uncharacterized protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=M4BH76_HYAAE)

HSP 1 Score: 106 bits (265), Expect = 6.880e-29
Identity = 50/69 (72.46%), Postives = 62/69 (89.86%), Query Frame = 1
Query:    1 MSDVNELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMGG 207
            MSDVN L+  PL++F K+S+HLIKKC KPDRKEF ++A AT+VGFL+MGFIGFFVKL+HIPINNI++GG
Sbjct:    1 MSDVNTLVFQPLKEFFKNSLHLIKKCNKPDRKEFARIAGATSVGFLLMGFIGFFVKLVHIPINNILVGG 69          
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: B7FQV9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQV9_PHATC)

HSP 1 Score: 106 bits (265), Expect = 7.270e-29
Identity = 50/63 (79.37%), Postives = 59/63 (93.65%), Query Frame = 1
Query:   16 ELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMG 204
            E+LI PLQ+F+KDSMHL+KKCTKPDRKEF  +A+AT VGFL+MGFIGFFVKLIHIPINNI++G
Sbjct:   10 EVLIEPLQQFAKDSMHLVKKCTKPDRKEFTAIARATGVGFLIMGFIGFFVKLIHIPINNILVG 72          
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Match: B5YLP6_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLP6_THAPS)

HSP 1 Score: 106 bits (264), Expect = 1.010e-28
Identity = 48/64 (75.00%), Postives = 60/64 (93.75%), Query Frame = 1
Query:   13 NELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLIHIPINNIIMG 204
            NE+LI PL++F+KDS+HL+KKCTKPDRKEF  +AKAT +GFL+MGFIGFFVKL+HIPINNI++G
Sbjct:    8 NEVLIQPLRQFAKDSIHLVKKCTKPDRKEFTAIAKATGIGFLIMGFIGFFVKLVHIPINNILVG 71          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1930.5340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRT4_ECTSI1.580e-3894.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YV57_9STRA3.080e-3691.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U037_9STRA6.610e-3176.81Transport protein sec61 subunit gamma n=2 Tax=Mono... [more]
K3X8N9_GLOUD3.000e-3075.36Uncharacterized protein n=6 Tax=Oomycota TaxID=476... [more]
W4FU52_9STRA6.050e-3073.91Protein transporter Sec61 subunit gamma n=8 Tax=Oo... [more]
A0A067CAZ0_SAPPC1.190e-2971.01Translocase SEC61 complex gamma subunit n=2 Tax=Sa... [more]
A0A1Z5K738_FISSO3.500e-2973.44Protein transport protein SEC61 subunit gamma and ... [more]
M4BH76_HYAAE6.880e-2972.46Uncharacterized protein n=16 Tax=Peronosporaceae T... [more]
B7FQV9_PHATC7.270e-2979.37Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B5YLP6_THAPS1.010e-2875.00Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1930contigH-elongata_contig1930:2602..5957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D8LRT4
Preferred nameSEC61G
KEGG koko:K01262,ko:K07342
KEGG TC3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
GOsGO:0000003,GO:0001555,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0006810,GO:0006886,GO:0007276,GO:0007281,GO:0007292,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0009994,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016049,GO:0019953,GO:0022412,GO:0022414,GO:0022804,GO:0022857,GO:0022884,GO:0030154,GO:0030728,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0044703,GO:0045184,GO:0046907,GO:0048468,GO:0048477,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:1904680
EggNOG free text desc.P-P-bond-hydrolysis-driven protein transmembrane transporter activity
EggNOG OGsCOG2443@1,KOG3498@2759
EC3.4.11.9
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02044
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein translocase SecE domain
Ec32 orthologEc-08_002350.1
Exons2
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930099.6395965-CDS-H-elongata_contig1930:2601..26981622930099.6395965-CDS-H-elongata_contig1930:2601..2698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1930 2602..2698 +
1691679279.6655-CDS-H-elongata_contig1930:2601..26981691679279.6655-CDS-H-elongata_contig1930:2601..2698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1930 2602..2698 +
1622930099.6573968-CDS-H-elongata_contig1930:5844..59571622930099.6573968-CDS-H-elongata_contig1930:5844..5957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1930 5845..5957 +
1691679279.6786304-CDS-H-elongata_contig1930:5844..59571691679279.6786304-CDS-H-elongata_contig1930:5844..5957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1930 5845..5957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1930.5340.1prot_H-elongata_contig1930.5340.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1930 2602..5957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1930.5340.1

>prot_H-elongata_contig1930.5340.1 ID=prot_H-elongata_contig1930.5340.1|Name=mRNA_H-elongata_contig1930.5340.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MSDVNELLIIPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGF
IGFFVKLIHIPINNIIMGG*
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mRNA from alignment at H-elongata_contig1930:2602..5957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1930.5340.1 ID=mRNA_H-elongata_contig1930.5340.1|Name=mRNA_H-elongata_contig1930.5340.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3356bp|location=Sequence derived from alignment at H-elongata_contig1930:2602..5957+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGACGTGAATGAACTCCTGATCATCCCCCTTCAAAAGTTTTCTAA AGATTCGATGCACCTGATCAAGAAGTGCACCAAACCCGATCGAAAGGGTG AGTGGTCTTGATTGAGCCATTGACTTCGTTGTGTGAGTGGTCATCACAAA AGTTGTTCGGTTCCACAGTCCTTGCCTCCGATACTGTATGTGACTGTATC GACAATGTAGTAGTAGTGGGTATGGGGAAAAAAAGGTGCACAATAATTGG TCAATTGAGTTCTCTGAATAGGCTGCAGCCGTTACTCAAGCTCCCTTGAG GATTGCTGGCTCAGCACCGGCGGACTCTCTGTGGTAAACGCCATAGGTAC AATTGCGTGACCTGATGAAACCGGGATTGACCCGATGGTGGTTGACGGTA GAGATGGACGCCGTCGCGAATACACACCAGATGATGATTCCGGGAATACA CAACAGATGAGGATTTCGGGAATACACAACAGATGAGGATTCCGGGAATA CACACCAGATTCAGCCTGGGTTAAGAGGATGAGCAGACTGACGTGGGACC GCGAACGGGGACAGCAAATTAATAAAAAAGGAAAATTAATATTATTTTTA AATCAAATTACATTAGACCGCCCAAACCGGCATGACACGTAAGGGGGTGC CACACCGATTTTCCCTGTTCAGCTGACCACAACCAGGAGACAACAAATCC GGTTGATACTTACTCTCCTATATGTGATGACCGCAATTGGCACAATTCTC CAAGATTTGTGCAGACACGCCCCATGGCAATCCCTTTATCCGTATTTAAC GTGTATCACACATATCAGGAGCCTCTGTTCCTTTTTATGGCAGTGTTCGT CCTTCTTCAATGAATAAGAGAGGAAATACCCTCCAAAGCTTTACGTGTGG CATACCCAAGCTGAAGAAACTGAAATTTCTCAAGGATGGCGTAAATTAAC CCGAACACTGAAATGCGGCTGAAATCAATGTTAAGATTTGAAGAAGGACC TGGATGTCGTCGTGAAATGCAGATGATATGTTGATTAGGTCAACATCTTT GATTATTTCATATACTTTGACCGATACCGTCCCAGGTTCTAGATCGCCAA TGCTATCTATTGCGATGTTGCCCATCCCGCATGTGGTGCTAAAGGATCTA TCTCCCCAGTTAACGCCTACCAAATTTTATTGCGGTGCGATTTCATCAGT CTTACACCTTGTCAGTTTAATCTTTAAAATTTTCTTACTTCCGTTCTTAT GATTTCCGCTACAACAACGGAACCGTCCCACGTTGGAAGTTTTTTTTATA CGTCGATGATTAACGACAGCGGAACATTACTCCAGTCGTCCCAAATCTGG TAGTTTGTCGCCGTTCGGAAGTTATCAGGTATCAGCGTAAACCGGCGATA TTTTCATCAAGCACCTTTATCGACTTGCCAGAATGTTTGACTACCGTTTG ACATGCTAGCATCCTTCCTTTTTTGCTGGGTCAACTTTATAACAAAAAAG TGAAACCCCCTATCTAGCGATGCCGCAGAATCTAGTAAATGCTTCTATTG AGCTTTGTTTCAGTTTTAGATACCTTGTGGCTAAGACCACTCGAAGAGCT TGGCTCGCGAACTCGTCATTCGATTTCCCCGGTGGGACGTGAGTTCGAAT TTCAGCGCAGTCACACGAACTGGGATTTTCTATCACACGTGGAGAAAATT CGACTTCACGATCGTCGAGGGAAAGGAGCGGCCGAATCCTTCTCACGACA AAAATTAAGGCAAACACCGCAGAAGGGAGGTGGGAGAAATCATGTGTGAC CACATCCAGAATAAATGGGATGACAACATGTTCAAGAGTAGACGGGAGTA GTAGTAGTAGAAACTAAAAATCCCCATTTCTCGCTGAGATTCCTCACACC TCACTCAGCGTATGATCCGACTGGTGACATTCCCTCATTTTGTCCTCAGG ACGACGACAAAAATATTCTTGAACTGATATATTTTTTATCCTCTGAATTA TACCCAAGATGTTATAAGTTCGTCATGAAATAGAGAACGACGCGTAAAAG CTTCGTAATAAAAAAAATCCTGAAATCTACTCTAAATTATTCTTGATCCA AATCTGTGTGCGCTTACCCAAAAGCTCACATTCTGGGTATATAGTTATAT CCAAGAACATGGCCATGACAGATTTGTCAACCCAATTCGAACCCCTGTAT TAATTAAAATGTGTAACTAGCCTTCGTACAACGTGCAGTTTATGGTTCCT GGCCCGTTCGGGCGGATGTTTTTTTCTTGAGGATAGGTTTCCGTGACGTC ACAGCAAATGATCTAGCTGCGGCTTAGACTTGTCCTTCGTACATATAATC CAGAAATGAAAATGTTGTTGATCCCGCTGCAGCTGTAGTGCAGGAAGTAT AAAGCAACATTAGTTGCGGCTTCGGAGCTGCTCTCGTCGGAGGATGAAGG TTGCGAGGCAAGCTGAGTCAAGGTTCCCCGTCCGTACAGAATTTCAAGAA AACCGATCAATATTCGAACTAATCTTTCTGGTCTAAGTCGAGAACCATCT CGTGCGCTGCTGTTGGTTTGACATTGCAGGTTGTACGAAGATGCCGAGGT GCAATGTTTGACTGAAAGGATATGACGTGATTTTATTTCGTATTTCGCTT TATTTATTGCACCTGAATGATTGTGATGATTGTCATACTTTCTCTCATTC CCGGTGGCCAAGGTTTTGGCCACCAACCGCCGATCGAACGATGGCCATCT TTAAAGCTGCGCTATTACGCTCCAGTAACTGTAGCCAATTTCACGTGTCC CGTTAATTGATTCTATTCTTGCATTATTGTCGAAGATTACACCAAATATT ACCGCACAAATGTTTTGGCACGAAATGCCGAATTTCGTGCCACATATACC CGAAACGATTCATTATGGAACGAAATTCTAGTCAACAAGAATCTAAAAAT GTTGCTATACGAAATCCCTTCTAGGTTAGGCAATATGCTTCCAGAAATGA TTCGAGATCAATCAAGATAAATGCATCATGCCCCTATACCCAATCCTAAG CACTGTACCCTTCCATCAAACCCGTACAATGAAGCAGTACTATTATCAAT CAACCCCTTTCTCGTTTATGAGTAATCATAGTCTACATCATTAGCTCCCT CCGATCGGTATCTAACGAAGTCGATCGGTATCTAACGAAGTACATGCCCA CCGCAAAATGTTGCCTTGTTTGTTCTGCTGCTTTGCTACCCAGAGTTCAT GCAGGTTGCGAAAGCCACAACAGTCGGATTTCTGGTAATGGGTTTCATTG GATTTTTTGTTAAGCTTATCCACATCCCCATCAACAACATCATCATGGGC GGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig1930:2602..5957+

>mRNA_H-elongata_contig1930.5340.1 ID=mRNA_H-elongata_contig1930.5340.1|Name=mRNA_H-elongata_contig1930.5340.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig1930:2602..5957+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGACGTGAATGAACTCCTGATCATCCCCCTTCAAAAGTTTTCTAA
AGATTCGATGCACCTGATCAAGAAGTGCACCAAACCCGATCGAAAGGATG
TCAGACGTGAATGAACTCCTGATCATCCCCCTTCAAAAGTTTTCTAAAGA
TTCGATGCACCTGATCAAGAAGTGCACCAAACCCGATCGAAAGGAGTTCA
TGCAGGTTGCGAAAGCCACAACAGTCGGATTTCTGGTAATGGGTTTCATT
GGATTTTTTGTTAAGCTTATCCACATCCCCATCAACAACATCATCATGGG
CGGCTGAAGTTCATGCAGGTTGCGAAAGCCACAACAGTCGGATTTCTGGT
AATGGGTTTCATTGGATTTTTTGTTAAGCTTATCCACATCCCCATCAACA
ACATCATCATGGGCGGCTGA
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