mRNA_H-elongata_contig19286.5337.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19286.5337.1
Unique NamemRNA_H-elongata_contig19286.5337.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: D7FQ95_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ95_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 9.110e-78
Identity = 165/354 (46.61%), Postives = 205/354 (57.91%), Query Frame = 1 
Query:    1 LQPRQGPRVKEALAKVVASLEAECATAPVSKPPPVD-------------------DAVMAAMSGSDLPAAQKELQATAS-ISAAPSPDAEGASLIRDPPAPRASDIRYNTVKTFSWDQGSYNSPKISVYVPLSGVVTAKDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLSYGGYENWNNLAAKKAKKAADKSNPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQNGGGK-ADPLDEPPSYSSGKTG-----------------------GLGNFDDDMD-----------------DLDLDKGIGDHGWGKGGKDDFGFGSKAP 879
            L+  +GPRV++AL+ +VASL++  A  P                           D V AA+SGS LP A+ +  A A+     P+   EG      P  PRA + +Y TV+ F+WDQGS++SPK+SVYVPL GV  AK+RVSCSF +RGFDL V  L G++YRL+QNNL+KDIVPGESK LVK+DKVI+KLQK K  YG Y+NW NLAAKKAK+   K+NPQ  +MDMMKDMYDDGD++ KK+IGEAM+KS QN G       D+P  Y SG +                        GLG                        ++DLDK  GD GWG GGKDDFGFGS  P
Sbjct:   16 LETAKGPRVRKALSGLVASLQSTAAAEPAEAETDXXXXXXXXXXXXXXXXXXXXXDDVPAALSGSHLPEAEGQAAAEAAGAPVVPATKVEGGV----PAPPRAPERKYATVEKFAWDQGSFSSPKVSVYVPLEGVGAAKERVSCSFTSRGFDLTVKDLNGKSYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKVKGEYGTYDNWANLAAKKAKRVDPKANPQAGIMDMMKDMYDDGDESTKKLIGEAMLKSHQNRGAPPGSSFDKPDPYGSGSSSXXXXXXXXXXXXXXXXKSSSPFDGLGEXXXXXXXXXXXXXXXXXXXXXXXNMDLDKDTGDGGWGAGGKDDFGFGSAVP 365
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BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: A0A7S2Y2M6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2M6_9STRA)

HSP 1 Score: 178 bits (451), Expect = 5.280e-49
Identity = 89/166 (53.61%), Postives = 122/166 (73.49%), Query Frame = 1 
Query:  256 IRYNTVKTFSWDQGSYNSPKISVYVPLSGVVTAKDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLSYGGYENWNNLAAKKAKKAADKSNPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQNGGGKADP----LDEPP 741
            + Y+T+ TF WDQG YNSP + +Y+ L GV   KDRV+C F    FDLKV  L+G+NYRL+++NL+KDIVP ESK +VKK+++ +KL+K K  Y  +++W +L AKK K  + K +P  ++MDMMKDMY DGDDNMKKIIGEAMMK+++  G K++P    +D PP
Sbjct:   74 VTYSTIATFGWDQGEYNSPWVFIYISLDGVGACKDRVACDFTKSSFDLKVIDLDGKNYRLLKDNLDKDIVPSESKCIVKKNRITIKLKKVKGEYS-FDHWTDLVAKKKKSDSKKEDPSASIMDMMKDMYQDGDDNMKKIIGEAMMKAQR--GEKSEPGMPDMDLPP 236
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BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: A0A835YKN5_9STRA (CS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN5_9STRA)

HSP 1 Score: 177 bits (448), Expect = 4.870e-48
Identity = 99/189 (52.38%), Postives = 134/189 (70.90%), Query Frame = 1 
Query:  259 RYNTVKTFSWDQGSYNSPKISVYVPLSGVVTAKDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLSYGGYENWNNLAAKKAKKAA---DKSNPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQNGGGKADPLD-EPPSYS---------SGKTGGLGNFDD 786
            ++  + TF+WDQG YNS  +SVYV L GV TAKDRV+C+F+T  FDL+V  LEG++YRL+++NL+K+IVP +SK LVKKDKV++KL+K+K  +G  E+W NL AK+  KAA   DK  P  ++M+MMKDMYD+GDDNM+KIIGE+M+KS+Q           +PPS+          +GK G LG  DD
Sbjct:   93 KFEAITTFAWDQGEYNSEWVSVYVTLPGVGTAKDRVACTFDTFAFDLQVRDLEGKSYRLIKDNLDKEIVPDQSKVLVKKDKVVVKLRKSKGQFGP-EHWANLTAKRPHKAAAAKDKD-PSASIMEMMKDMYDEGDDNMRKIIGESMLKSQQXXXXXXXXAALDPPSFDDSDFGAGAGAGKFGDLGGMDD 279
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BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: A0A7S3XYD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYD2_HETAK)

HSP 1 Score: 172 bits (436), Expect = 1.450e-46
Identity = 110/266 (41.35%), Postives = 149/266 (56.02%), Query Frame = 1 
Query:   19 PRVKEALAKVVASLEAECATAPVSKPPPVDDAVMAAMSGSDLPAAQKELQATASISAAPSPDAEGASLIRDPPAPRASDIR----YNTVKTFSWDQGSYNSPKISVYVPLSGVVTAKDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLSYGGYENWNNLAAKKAKKA----ADKSNPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQNGGGKADPLDEPPSYSSGKTGGLGNFDDDM 792
            P  +E L  +VA LE+E AT   S PP  D                              P+A        PPAP AS  +    + ++ +FSWDQG YN+P +++Y+ L GV   KD V+ +F    FD+ +T L G+NYRL++ NL+K+I+P ESK++VK +K+I+KL+K K  Y  Y++W  L AK+AK      A K +P G LM MMKDMY+DGDDNMKK+IGEAM KS +  G K+DP     + S G     G  DDDM
Sbjct:   27 PSNRERLKGMVAQLESELATKRSSLPPEEDK-----------------------------PEAGAEDGAASPPAPPASSAQPKKVFTSIDSFSWDQGEYNTPWVTIYLFLDGVGAVKDNVTSNFTASSFDVTITDLNGKNYRLIKENLDKEIIPAESKHIVKANKIIIKLKKVKGEYS-YDHWTGLTAKRAKTGGAAGATKEDPMGGLMSMMKDMYEDGDDNMKKVIGEAMEKSMR--GEKSDP-----TSSFGGDSSFGEDDDDM 255
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BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: A0A6H5L5T1_9PHAE (SGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T1_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 2.410e-46
Identity = 121/292 (41.44%), Postives = 158/292 (54.11%), Query Frame = 1 
Query:    1 LQPRQGPRVKEALAKVVASLEAECATAPVSKPPPVD---------------------DAVMAAMSGSDLPAAQKELQATASISAAPSPDAEGASLIRDPPAPRASDIRYNTVKTFSWDQGSYNSPKISVYVPLSGVVTAKDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKT--------------------------------KLSYGGYENWNNLAAKKAKKAADKSNPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQNGGGK 717
            L+  +GPRV++AL+ +VASL++  A  P                             D V AA+SGS LP    E +  A+  AA +P    A +    PAP  +  R               +PK+SVYVPL GV  AK+RVSCSF TRGFDL V  L G++YRL+QNNL+KDIVPGESK LVK+DKVI+KLQK                                 K  YG Y+NW NLAAKKAK+   K++PQ  +MDMMKDMYD+GD++ KK+IGE +  S+++ G +
Sbjct:   16 LETAKGPRVRKALSGLVASLQSTAAAEPAEAETDXXXXXXXXXXXXXXXXXXXXXXXDDVPAALSGSHLP----EAEGQAAAEAAGAPVVPAAKVEGGVPAPPRAPER---------------NPKVSVYVPLEGVGEAKERVSCSFTTRGFDLTVKDLNGKSYRLLQNNLDKDIVPGESKILVKRDKVIVKLQKAYRLDQARLEFQEYGRELTIVDTCLPTPRPDKVKGEYGTYDNWANLAAKKAKRVDTKADPQAGIMDMMKDMYDEGDESTKKLIGEDVKASKRSVGSR 288
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BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: A0A7S2W426_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W426_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.910e-44
Identity = 92/177 (51.98%), Postives = 118/177 (66.67%), Query Frame = 1 
Query:  235 PAPRASDIRYNTVKTFSWDQGSYNSPKISVYVPLSGVVTAKDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLSYGGYENWNNLAAKKAK--KAADKSNPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQN----------GGGKADPL 729
            P PR +   +  +  F+WD G YN+P + VY+ L GV   K+ V CSF   GFDL+VTGL G+NYRL+++NLEKDIV GESK +VKKD++ LKL+K K  Y  YE W NL AKK K  K A  ++P G +MDMMKDMY+DGDD+M+KII E+M K+R            GGG AD +
Sbjct:   86 PVPRGAS--FIPISKFAWDSGEYNTPWVCVYITLEGVGAVKESVECSFSKDGFDLRVTGLGGKNYRLLKDNLEKDIVAGESKCIVKKDRITLKLRKVKGDYS-YETWTNLTAKKGKTEKKAKGADPMGGIMDMMKDMYEDGDDSMRKIIEESMRKARSGEGSSPSVPDLGGGMADMM 259
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BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: A0A7S2B3T2_9STRA (Calcyclin-binding protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B3T2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 6.110e-42
Identity = 89/182 (48.90%), Postives = 120/182 (65.93%), Query Frame = 1 
Query:  241 PRASDIRYNTVKTFSWDQGSYNSPKISVYVPLSGVVTAKDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLSYGGYENWNNLAAKKAKKAADKS--NPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQNGGGKADPLDEPPSYSSGKTGGLGNF 780
            PRA  I Y  + +F WD G YNS  +++YV L GV + KD V C F+   FDL+V GL G++YRL+++NLEKDIVP + K +VKK+KV +KL+K K  +  Y++W  L +KK K    KS  +P G +MDMMKDMY DGDD+MKKII E+MMK++   G K +P         G  GG+G+F
Sbjct:   86 PRA--INYTAISSFGWDAGEYNSAYVTIYVTLEGVGSVKDSVECEFKKDSFDLRVHGLNGKSYRLLKDNLEKDIVPDDCKTIVKKNKVTIKLKKVKGEFS-YDHWTTLTSKKGKVEKKKSAADPMGGIMDMMKDMYQDGDDDMKKIIAESMMKAQS--GEKTEP---------GMGGGMGDF 253
[Close]
BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: A0A1Z5J663_FISSO (Calcyclin binding protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J663_FISSO)

HSP 1 Score: 157 bits (397), Expect = 5.140e-41
Identity = 87/177 (49.15%), Postives = 124/177 (70.06%), Query Frame = 1 
Query:  187 AAPSPDAEGASLIRDPPAPRASD--IRYNTVKTFSWDQGSYNSPKISVYVPLSGVVT-AKDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLS-YGGYENWNNLAAKKAKKAADKSN-PQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQ 702
            AAP P A       D  AP A+   I+Y ++  F++D G Y++P +++Y+PLSGV + + D V CSF    FDL V  L+G++YRL+++NLEKDI P +SKY++K DKV+LKL K K S YGGY+ W  L  KK +K++ K + PQ ++MD+MKDMY++GDDNMKK+IGE  MK ++
Sbjct:   65 AAPVPAAVPVVAATDSSAPVAASPSIKYVSIDRFAFDAGGYDAPFVTLYIPLSGVGSISADNVQCSFTKDSFDLIVRDLQGKSYRLLKDNLEKDIDPAKSKYIIKSDKVVLKLHKVKTSEYGGYDYWTKLTDKKDRKSSSKKDDPQKSIMDLMKDMYNEGDDNMKKVIGETFMKQQR 241
[Close]
BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: A0A7S2ESS6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ESS6_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.590e-40
Identity = 85/173 (49.13%), Postives = 118/173 (68.21%), Query Frame = 1 
Query:  193 PSPDAEGASLIRDPPAPRASDIRYNTVKTFSWDQGSYNSPKISVYVPLSGVVTA-KDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLSYGGYENWNNLAAKKAKK--AADKSNPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQ 702
            P P A GA+    PPA       YNT+  FS+D G Y+SP +++YVPL  V +  KD+++C F +  FDL V  L G++YRL ++NL+ +I P +SKY+VK DK+++KL K K  YG Y++W++L AKKAKK   A K +P   +MD+MKDMY+ GDD MKK+IGE MMK R+
Sbjct:  128 PVPVAVGATATTTPPA------HYNTIDRFSFDAGKYDSPFVTLYVPLPSVGSHDKDKITCDFTSTQFDLIVRDLSGKSYRLFKDNLDNEIDPSKSKYIVKADKILVKLGKKKGEYGSYDHWSDLTAKKAKKKKGASKEDPAAGIMDLMKDMYESGDDKMKKMIGETMMKQRR 294
[Close]
BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Match: K0TEH4_THAOC (CS domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEH4_THAOC)

HSP 1 Score: 157 bits (397), Expect = 2.330e-40
Identity = 81/158 (51.27%), Postives = 109/158 (68.99%), Query Frame = 1 
Query:  259 RYNTVKTFSWDQGSYNSPKISVYVPLSGVVTA-KDRVSCSFETRGFDLKVTGLEGQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLSYGGYENWNNLAAKKAKKAADKSNPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQNGGGKADPL 729
            +Y +  T+  D GSYNSP ISVYVPL+G+    K +++C  ++  FDL V   EG++YRL+ +NLEKDI P +SKY+VK +K+I+KL K K  YG Y++W  L AKK K + +K +P   +MD+MKDMYD GDDNMKK+IGE M K R     K DP+
Sbjct:  134 KYQSFPTYQVDMGSYNSPTISVYVPLNGIGKHDKSKITCELKSTSFDLVVADFEGRSYRLLNDNLEKDIDPSKSKYVVKPNKIIIKLGKVKGEYG-YDSWTQLTAKKKKTSEEKKDPTAGIMDLMKDMYDSGDDNMKKMIGETMYKQRTGQLNKDDPM 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19286.5337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ95_ECTSI9.110e-7846.61CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A7S2Y2M6_9STRA5.280e-4953.61Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YKN5_9STRA4.870e-4852.38CS domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S3XYD2_HETAK1.450e-4641.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5L5T1_9PHAE2.410e-4641.44SGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2W426_9STRA1.910e-4451.98Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2B3T2_9STRA6.110e-4248.90Calcyclin-binding protein n=1 Tax=Florenciella par... [more]
A0A1Z5J663_FISSO5.140e-4149.15Calcyclin binding protein n=2 Tax=Fistulifera sola... [more]
A0A7S2ESS6_9STRA1.590e-4049.13Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
K0TEH4_THAOC2.330e-4051.27CS domain-containing protein n=1 Tax=Thalassiosira... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19286contigH-elongata_contig19286:778..5112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.7
Seed ortholog evalue2.3e-64
Seed eggNOG ortholog2880.D7FQ95
KEGG koko:K04507
KEGG Pathwayko04310,map04310
EggNOG free text desc.S100 protein binding
EggNOG OGsKOG3260@1,KOG3260@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-01_006980.1
Exons7
Model size1540
Cds size951
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930098.9792519-UTR-H-elongata_contig19286:777..8941622930098.9792519-UTR-H-elongata_contig19286:777..894Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19286 778..894 +
1691679279.4346194-UTR-H-elongata_contig19286:777..8941691679279.4346194-UTR-H-elongata_contig19286:777..894Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19286 778..894 +
1622930099.1029809-UTR-H-elongata_contig19286:4640..51121622930099.1029809-UTR-H-elongata_contig19286:4640..5112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19286 4641..5112 +
1691679279.5226407-UTR-H-elongata_contig19286:4640..51121691679279.5226407-UTR-H-elongata_contig19286:4640..5112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19286 4641..5112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930099.007098-CDS-H-elongata_contig19286:894..10371622930099.007098-CDS-H-elongata_contig19286:894..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 895..1037 +
1691679279.4469953-CDS-H-elongata_contig19286:894..10371691679279.4469953-CDS-H-elongata_contig19286:894..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 895..1037 +
1622930099.0177624-CDS-H-elongata_contig19286:1412..15531622930099.0177624-CDS-H-elongata_contig19286:1412..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 1413..1553 +
1691679279.4560173-CDS-H-elongata_contig19286:1412..15531691679279.4560173-CDS-H-elongata_contig19286:1412..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 1413..1553 +
1622930099.0324526-CDS-H-elongata_contig19286:2255..23761622930099.0324526-CDS-H-elongata_contig19286:2255..2376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 2256..2376 +
1691679279.465251-CDS-H-elongata_contig19286:2255..23761691679279.465251-CDS-H-elongata_contig19286:2255..2376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 2256..2376 +
1622930099.0466273-CDS-H-elongata_contig19286:2758..28491622930099.0466273-CDS-H-elongata_contig19286:2758..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 2759..2849 +
1691679279.4745953-CDS-H-elongata_contig19286:2758..28491691679279.4745953-CDS-H-elongata_contig19286:2758..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 2759..2849 +
1622930099.0641823-CDS-H-elongata_contig19286:3175..32381622930099.0641823-CDS-H-elongata_contig19286:3175..3238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 3176..3238 +
1691679279.4838712-CDS-H-elongata_contig19286:3175..32381691679279.4838712-CDS-H-elongata_contig19286:3175..3238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 3176..3238 +
1622930099.0783176-CDS-H-elongata_contig19286:3682..40461622930099.0783176-CDS-H-elongata_contig19286:3682..4046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 3683..4046 +
1691679279.4929864-CDS-H-elongata_contig19286:3682..40461691679279.4929864-CDS-H-elongata_contig19286:3682..4046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 3683..4046 +
1622930099.0923746-CDS-H-elongata_contig19286:4612..46401622930099.0923746-CDS-H-elongata_contig19286:4612..4640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 4613..4640 +
1691679279.5117304-CDS-H-elongata_contig19286:4612..46401691679279.5117304-CDS-H-elongata_contig19286:4612..4640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19286 4613..4640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19286.5337.1prot_H-elongata_contig19286.5337.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19286 895..4640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19286.5337.1

>prot_H-elongata_contig19286.5337.1 ID=prot_H-elongata_contig19286.5337.1|Name=mRNA_H-elongata_contig19286.5337.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MAAMSGSDLPAAQKELQATASISAAPSPDAEGASLIRDPPAPRASDIRYN
TVKTFSWDQGSYNSPKISVYVPLSGVVTAKDRVSCSFETRGFDLKVTGLE
GQNYRLVQNNLEKDIVPGESKYLVKKDKVILKLQKTKLSYGGYENWNNLA
AKKAKKAADKSNPQGALMDMMKDMYDDGDDNMKKIIGEAMMKSRQNGGGK
ADPLDEPPSYSSGKTGGLGNFDDDMDDLDLDKGIGDHGWGKGGKDDFGFG
SKAPPPQASEPVPSAAVAEDEEEDAGEAVGAPEAKLPPVKGQSYGGVADG
KGAVPKSSNPLEALDD*
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mRNA from alignment at H-elongata_contig19286:778..5112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19286.5337.1 ID=mRNA_H-elongata_contig19286.5337.1|Name=mRNA_H-elongata_contig19286.5337.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4335bp|location=Sequence derived from alignment at H-elongata_contig19286:778..5112+ (Himanthalia elongata Himel1 dioecious)
CTCCAACCACGGCAGGGCCCGCGAGTGAAGGAAGCACTCGCAAAGGTGGT
AGCCTCTCTTGAGGCCGAATGCGCCACGGCCCCCGTGTCGAAGCCACCCC
CCGTTGACGATGCCGTTATGGCAGCGATGAGTGGGTCAGATTTGCCTGCT
GCTCAAAAGGAGCTCCAGGCGACGGCATCAATCTCCGCCGCACCTAGCCC
CGACGCCGAAGGCGCGTCACTCATTCGAGACCCGCCAGCGCCCCGTGCGT
CTGATATTAGGTGGGTCGTCGGGCCCCACTAGAGAGTATGCATGTGCAGA
GCAAACAGTTGCTCGCCGAAATTGACGACCGGAGTGGGTCAAGCCTCCGA
TGAAAAAGGGTTGCAGAGATCCGCCTCTCTCTCTCTCTCGCTGTCTCATG
ATGTCCCGTAGTCAATGATCAAACAGGCTTGTTGTCCCCTCCTTTGATAG
AGATCCTTTGCGTGGGACAAACCTTCACGGATCGCGGCGCAATCCAGAAG
GCTCTGTTTTTAGCCCCAGTTGCTTGTACAGTTTAGTGTAGTACTGTACG
AGATCACCCTTTCCCTTCCTGTTAGACTTGAATCAGCGTGGCTCGAGCAT
GATCCGGTAATGTAATGATGACGACAATTCAATAGGTACAACACGGTCAA
GACGTTCTCGTGGGATCAAGGCAGTTACAACAGCCCGAAGATTTCTGTGT
ATGTACCCCTGTCGGGCGTCGTCACCGCTAAGGACCGTGTCTCCTGCTCG
TTCGAGACTCGCGGCTTCGATCTCAAGTGAGCGTTGTAGATCAATCTTGT
TTGTGTGTTTGTGTTTGGGGGTTACCCATGTTAAAGGCATGCCGTATCCT
AACGGGCATAGACCACTCATCCCAACAATGCCGGGACGAAGCGATAGCCG
TTTTTTCGCCGGCCAGGCTGCAATTCAAAAGAGTGACACCATCCTTGAAG
TCATCACTCTTGCGGTTGCTACTTTATGCCGTTACCGTTGCCGTGGTTTA
ATTGGAAATTAATCAGGCGCAGCTATACAAAAGTACCACAAAAAAAAACA
ACTAATAATAATGTCCTTAAAAAACAATGCACAAATGCGACAAATCACAT
GTACCGTATTTGTTATACACTCAAGACCGTAATCCGCCCATGAATACTCC
TGGCGAAGTAGTTTTCCATAAGTCGATGGTTGCTCTGGGACTTCCTAGCA
AACCATTGTCCAACAGACATATTCTATGGAATGTTATGCGTCTCATCCCT
TTCGAGAGAAGTAAGACTTTTCGACCATGGTCTCGGATATACCGTCTCAC
GAGATCAATTTCCTATTAGCCGATCGCGTTACTGAATGACGTCTTGCCCC
CGTGGTGTTCTGTTAACGGCTTATTTCCGTGTTATCCTCGGTCGCTTGTT
GCCCCCCCCCCGCCCGAACCATAAACGCCACGTTATTGCTATACAACGCC
TTATATCTTTGTTTTCTCCACGGCGAAGAGTTACGGGCCTTGAAGGCCAA
AACTACAGATTGGTCCAAAACAACCTGGAGAAGGACATCGTACCCGGAGA
GAGCAAGTACCTCGTGAAAAAGGATAAAGTAATCTTGAAGCTTCAGAAGG
TGAGAGGGGAATGTGAGATCGTGGTGACGCGCGCTAAGCCGCCGCCGAGG
GGCCTGCGAGGTATGACGGGGGGGGGCAAAGAAGGCAAAGTTTTGTGGTT
AAAGCTAGTGGATTGGTCCTGTCCTGCCGTGATGAAATAAATGGGAGGCT
ATTTCCGTTGTTGAACAAGCGCTGTTGTTCTACGGCGGTGGCGGCGGGAT
ACAGAGCTGCGGGGTTAATCGTTGTTGTTTGTTGGGTTTTTTTAGCGACC
GTATGTTACCAACGACTTCTACTTCCCCCCCCCACCCTCTTTTCCGCTGA
CGCGTAGTCAATAATCAATGATTTAACAGCAAAGCTTGAGTACACCCTCC
TCCCCATCCCCCTCACTGACCCACTGATCAGACCAAGCTCTCGTACGGAG
GATACGAAAACTGGAATAACTTGGCCGCGAAAAAGGCGAAGAAGGCGGCG
GACAAATCCAACCCACAAGGAGGTATGTAAAATAAAAAGAAAATTGGATT
ATGCCGTATTTCCGCCCGTAAAACCTGAAAGCGCTCGCCGTGTTAAGTCT
TTTAAGCTACACGTTAGCTGGCGTAAGCTCAGCCTTGGGTACCATTTCCC
ATCCTTTTGAAGATCGACACCGGCGACACGAGCGACCGATTAAGGGTCTG
ATCTGGTCTGGTCTGCATGTGATCCACCCTTGAAAGGCGAGTTTCGTTGC
GCGCTGCAGAGGCCGCCACCGAGAGCAAGTTACAGTCTCGGTGCTCTGAT
GTAAATCATCGTCCTTGAAATCGTCTCGTCCCATTGATCACGCGACAGCG
CTTATGGACATGATGAAGGATATGTATGACGACGGCGACGACAACATGAA
AAAGATTATCGGTGAGCGCTGTTTGGGTGCGTATGTGTGTCTCACGAAGA
AAAAAGGGGGTCGCTTGTCGTCGGTATGGCGCACGCGGGCGTGTGCAGCC
TCAAGACGATCAAGAGATCAAGAGATTTTGGACGCATCTCGGACGAAAAC
ATGAAACGTCTCCGGGCCGGACAGGGTCGACCCTTTCATATCTACTATAC
TACCCAGCGTACTTTTTAGGCATCGTAGTTCAAGGAGGGTGAATCGGCTT
CAAGAAAGGCACATCGACTGAATACGGAACGAGCGGAGGCACACTCCATC
ATACCCCCTCCCCCCCCCCTGCGTCCTGTATTAAAAACATAATAATACGA
GATTATTCTTGTGTCACCATCCGCACCCCGCGCCCCAAACGCCTATGATG
GCTACCTCTAAATCCGCGAATATATGGCCTGCTTTTGGGTGAACGCGCGG
TTCAGGCGAAGCGATGATGAAGAGCCGACAGAACGGAGGTGGGAAGGCCG
ACCCGTTGGACGAACCCCCGTCCTATAGCAGCGGCAAGACGGGCGGCCTC
GGAAACTTCGACGATGACATGGACGACCTCGACCTCGACAAAGGCATCGG
GGACCATGGATGGGGAAAAGGCGGTAAGGATGACTTCGGGTTTGGCTCGA
AGGCGCCGCCCCCGCAAGCGTCCGAACCCGTCCCCTCTGCTGCTGTTGCG
GAAGATGAGGAGGAGGATGCAGGAGAAGCTGTTGGTGCGCCGGAAGCGAA
GCTGCCCCCCGTGAAGGGCCAAAGCTATGGTGGGGTGGCCGATGGAAAAG
GCGCGGTCCCCAAGAGCTCGTGAGTTCTCTGTCTCCTTGTAAGCTATTAA
AAGTCGTTTGGCTGATTTTCGTTCTTATTGAAAGGAAGAGTCGAAGAGCC
GACTGTGTGCGACCCCCACCCCCCACGCTTCCCGCTGGTGATGGTCCTGT
AGCTGCCGCCAATTAATTCGAAGACTTTTTCAGGATACGGCGTGGGGGGT
TTTCTAGCACGCAGGTCCTCGCCTCTACTTGTATGTCCGCCAGCTCGCGG
GCGCCAGATCCGCCGCGGTCTGGACTCGGCTCTTTTTTATTTCAAAAACA
GAAGATTTCATGTCTGCTTGCATAGGGTCTTTTTACTTTTATTCCTTTTG
ATTGAATTGAATTTGATTGAATTCTCACATAAGCTGATGTCAAAATCCAG
CCCGTGGTCACAAGGTAGAAAAAAAATAGTCAAATATTGAGAAAATATAT
TTCTTAGGTAAGTAATAAAGGAGTTGGCCCGCAGCGATCTTAGACATGAA
GCGAGCATAGCGAGCATACCGAACAGATGACCCTCTCAAACTATTCCACG
ATAACACCCGATGTACCCCCCCCCTACTCTATCAGGAATCCCTTGGAGGC
GCTGGATGATTGAGTCTCAAGACAAAATGTTGCAGATCCGATCCTGCCAG
GGCGTCTTCTTCTCAAGGTTATTTGATTATACTAAATATGTTGGCTGGCG
ATGTTATCTCGTGCAATCAGTACTTTCAGTGTTATTTGGTATTTTCATCA
AGAACTTGCCGCATTATCAGTACAGAGAGGAGCTGCACCATGTTATTACG
GCTCCGCGAGAAGGCACACGGGAGGCAAGACAAGTCGGTCGGACGGTCAC
CCTACTATATCTTTCTTAAAAACGACCGAGACCGCAGGGTCGGACGAGGG
GAATGACATGACATGGGCTGTGCTTTGTTGTATGGAGAATAGAAGTTACT
AAAGGCGAGTATGCAGGCTTCTATGAAGAAAATATAAAAGAGAAGACGTC
TTGTCGCTAGCTGCCGTTCCGTTTTTTTCATAGGTTTTCAGGGAGACGCG
TTTGTCATATGTTTGTGTAATATATCTCTCTATCG
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Coding sequence (CDS) from alignment at H-elongata_contig19286:778..5112+

>mRNA_H-elongata_contig19286.5337.1 ID=mRNA_H-elongata_contig19286.5337.1|Name=mRNA_H-elongata_contig19286.5337.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig19286:778..5112+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCGATGAGTGGGTCAGATTTGCCTGCTGCTCAAAAGGAGCTCCA
GGCGACGGCATCAATCTCCGCCGCACCTAGCCCCGACGCCGAAGGCGCGT
CACTCATTCGAGACCCGCCAGCGCCCCGTGCGTCTGATATTAGATGGCAG
CGATGAGTGGGTCAGATTTGCCTGCTGCTCAAAAGGAGCTCCAGGCGACG
GCATCAATCTCCGCCGCACCTAGCCCCGACGCCGAAGGCGCGTCACTCAT
TCGAGACCCGCCAGCGCCCCGTGCGTCTGATATTAGGTACAACACGGTCA
AGACGTTCTCGTGGGATCAAGGCAGTTACAACAGCCCGAAGATTTCTGTG
TATGTACCCCTGTCGGGCGTCGTCACCGCTAAGGACCGTGTCTCCTGCTC
GTTCGAGACTCGCGGCTTCGATCTCAAGTACAACACGGTCAAGACGTTCT
CGTGGGATCAAGGCAGTTACAACAGCCCGAAGATTTCTGTGTATGTACCC
CTGTCGGGCGTCGTCACCGCTAAGGACCGTGTCTCCTGCTCGTTCGAGAC
TCGCGGCTTCGATCTCAAAGTTACGGGCCTTGAAGGCCAAAACTACAGAT
TGGTCCAAAACAACCTGGAGAAGGACATCGTACCCGGAGAGAGCAAGTAC
CTCGTGAAAAAGGATAAAGTAATCTTGAAGCTTCAGAAGAGTTACGGGCC
TTGAAGGCCAAAACTACAGATTGGTCCAAAACAACCTGGAGAAGGACATC
GTACCCGGAGAGAGCAAGTACCTCGTGAAAAAGGATAAAGTAATCTTGAA
GCTTCAGAAGACCAAGCTCTCGTACGGAGGATACGAAAACTGGAATAACT
TGGCCGCGAAAAAGGCGAAGAAGGCGGCGGACAAATCCAACCCACAAGGA
GACCAAGCTCTCGTACGGAGGATACGAAAACTGGAATAACTTGGCCGCGA
AAAAGGCGAAGAAGGCGGCGGACAAATCCAACCCACAAGGAGCGCTTATG
GACATGATGAAGGATATGTATGACGACGGCGACGACAACATGAAAAAGAT
TATCGCGCTTATGGACATGATGAAGGATATGTATGACGACGGCGACGACA
ACATGAAAAAGATTATCGGCGAAGCGATGATGAAGAGCCGACAGAACGGA
GGTGGGAAGGCCGACCCGTTGGACGAACCCCCGTCCTATAGCAGCGGCAA
GACGGGCGGCCTCGGAAACTTCGACGATGACATGGACGACCTCGACCTCG
ACAAAGGCATCGGGGACCATGGATGGGGAAAAGGCGGTAAGGATGACTTC
GGGTTTGGCTCGAAGGCGCCGCCCCCGCAAGCGTCCGAACCCGTCCCCTC
TGCTGCTGTTGCGGAAGATGAGGAGGAGGATGCAGGAGAAGCTGTTGGTG
CGCCGGAAGCGAAGCTGCCCCCCGTGAAGGGCCAAAGCTATGGTGGGGTG
GCCGATGGAAAAGGCGCGGTCCCCAAGAGCTCGCGAAGCGATGATGAAGA
GCCGACAGAACGGAGGTGGGAAGGCCGACCCGTTGGACGAACCCCCGTCC
TATAGCAGCGGCAAGACGGGCGGCCTCGGAAACTTCGACGATGACATGGA
CGACCTCGACCTCGACAAAGGCATCGGGGACCATGGATGGGGAAAAGGCG
GTAAGGATGACTTCGGGTTTGGCTCGAAGGCGCCGCCCCCGCAAGCGTCC
GAACCCGTCCCCTCTGCTGCTGTTGCGGAAGATGAGGAGGAGGATGCAGG
AGAAGCTGTTGGTGCGCCGGAAGCGAAGCTGCCCCCCGTGAAGGGCCAAA
GCTATGGTGGGGTGGCCGATGGAAAAGGCGCGGTCCCCAAGAGCTCGAAT
CCCTTGGAGGCGCTGGATGATTGAGAATCCCTTGGAGGCGCTGGATGATT
GA
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