mRNA_H-elongata_contig19257.5330.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A7S4DK52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DK52_HETAK) HSP 1 Score: 181 bits (458), Expect = 8.500e-50 Identity = 100/196 (51.02%), Postives = 127/196 (64.80%), Query Frame = 1
Query: 451 SISAVMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILL-KDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYT 1035
+++ M +A+ VPPV YF YLMAAGVGVPVSED L I+VGTLL A FT K+ V + Y GVV+SD++ YS G FR G+ PLRRI + K+ S+ +A + +RR+G++ G AERFA+G+RGP+ L CG GVP F AGVALGAL GT+P+QL GY LR RP AAI A +YYT
Sbjct: 91 NLAGAMQSADKVPPVAYFGYLMAAGVGVPVSEDALCIWVGTLLPKAQFTLSRKIKSVLYLYTGVVLSDMVTYSAGVAFRNGMLQPLRRIFMPKNTDGLSSTSPMARAE--------QTVRRAGRWAGTAERFALGLRGPVCLACGALGVPPGTFLAGVALGAL-GTLPLQLGAGYLLRSRPDAAAAIAAGAAAYYT 277
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A0G4F5D7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5D7_VITBC) HSP 1 Score: 170 bits (430), Expect = 1.620e-45 Identity = 97/214 (45.33%), Postives = 127/214 (59.35%), Query Frame = 1
Query: 451 SISAVMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGS---KNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWL 1083
SI ++ A+ VP YFLYLMAAG+G+PVSED L IFVGTLL + ++ +VA VA YAGV +SD++ YSIG RGL P++ + GD G P + + L R++ SG VG +R+ VGVR P+ L+CGFTGVP R FA+GV LG GT+ +QLA+GYALR+ P I A +YY G PL A L+
Sbjct: 90 SIPELLERASTVPVPCYFLYLMAAGIGIPVSEDALCIFVGTLLPQPSSWSK-RVATVATLYAGVTVSDMLTYSIGVALERGLLEPIKHRIFPHHGD---------GWPPKNSLWERALRRVQSSGGAVGFVQRWMVGVRYPIALVCGFTGVPFRSFASGV-LGGAVGTLTVQLAIGYALRNNPKATGVIAAGIATYYMLGAPLAALASSVVLYF 292
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A8J9S1T7_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S1T7_9CHLO) HSP 1 Score: 134 bits (338), Expect = 2.080e-32 Identity = 75/177 (42.37%), Postives = 107/177 (60.45%), Query Frame = 1
Query: 463 VMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWC-YAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRP 990
++N N P+YY +Y+ AAG+G+P SED +I+VG+ L + + A V + Y GVV+SD++ + IG R+GL PL+ LL S I AE E++ + KY+G +RF++G RGP+ LL GFTGVP FAAG +LGAL GT+PIQL +GY +R+ P
Sbjct: 72 IVNFIENADPLYYLVYMFAAGLGLPCSEDAFVIWVGSKLWRGVYGAWQQAAYVLFIVYVGVVVSDMLTFCIGLALRQGLLKPLKDKLLPK---NSASITKAE----------EKVTKWSKYIGAVQRFSLGFRGPLCLLSGFTGVPAAQFAAGASLGAL-GTMPIQLTIGYLMRNAP 234
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A7R9TA43_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TA43_9VIRI) HSP 1 Score: 127 bits (320), Expect = 4.490e-30 Identity = 75/172 (43.60%), Postives = 98/172 (56.98%), Query Frame = 1
Query: 487 PPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTT----RHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRP 990
PP YF Y + AG+G+P SED ++ FVG LL A T + +A Y GVV+SD++ Y IG RGL +RR+LL + G ++T + L +R G VG +RF VG+RGP+ L GFTG+PL FA G A+GA TVP+QLA GY LRD P
Sbjct: 57 PPAAYFAYFLGAGIGLPFSEDAMVAFVGALLSRAWLGTAPLAQPAAQLLAVVYVGVVLSDVLTYVIGAALGRGLAPGMRRLLLPE-GSQAT------------ERALATVRSFGVAVGAVQRFCVGLRGPVCLAAGFTGMPLSKFALGAAIGASI-TVPLQLAAGYLLRDSP 214
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A5J4YD61_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YD61_9CHLO) HSP 1 Score: 118 bits (296), Expect = 3.670e-27 Identity = 80/233 (34.33%), Postives = 123/233 (52.79%), Query Frame = 1
Query: 442 GASSISAVMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACV-AWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRP----ATVAAIGAAFISYYTFGPPLIATFGGATLWLSRRKRRPRDVRGGE 1125
GA+S++ + A PP Y +Y++AAG G+P SED L+++VG+ + + +A V + Y GVV+SD++ + +G ++G F L+ L + I+V I + + +G +RF++G RGP+ L+CGFTGVP FA G A+GAL GT+P+QL +GY LR P +A + A + GP IAT AT K +P + GE
Sbjct: 4 GAASLAVFLETA---PPPLYLVYMLAAGFGIPCSEDALVVWVGSNILKGVYGGWQGIAYVLSIVYFGVVVSDMVTFFMGVALQKGFFKSLKNSLFSNSNSFDRAINV--------------INKRSRTIGAIQRFSLGFRGPLCLVCGFTGVPPTRFALGAAVGAL-GTMPLQLTVGYYLRHTPNPYLTALAVVSAPNLCGQLLGP--IAT---ATGLYFAGKEQPNQQKPGE 213
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A8J5X791_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X791_DIALT) HSP 1 Score: 117 bits (294), Expect = 4.370e-26 Identity = 80/210 (38.10%), Postives = 104/210 (49.52%), Query Frame = 1
Query: 475 ANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSK---NILERIRRSGKYVGVAERFAVGVRGPMTLLCG-FTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWLSRR 1092
++++ P YF YLM AG+GVP+SED L + G++LG+ R + VA Y GVV+SD+ + IG + LRR P G + + SG YVG RF VG+R P+ L CG GVPL FAAG ALGAL TVP QLALG ALR+R + + + S+Y GP A L R
Sbjct: 82 SSSIQPWQYFCYLMLAGLGVPLSEDGLGLLAGSVLGSLEPARRART--VAALYLGVVLSDVETFLIGALLVSRVGRALRRXXXXXXXXXXXXXXXXXXQPLGGAAGAKAMRLVADSGAYVGFVARFCVGLRAPIALTCGVLPGVPLGRFAAGAALGALV-TVPAQLALGAALRERVTSAVGLASLCASFYAAGPVSFAVASAVLYALGAR 288
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A7S2S6G0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S6G0_9STRA) HSP 1 Score: 117 bits (292), Expect = 3.250e-25 Identity = 74/179 (41.34%), Postives = 103/179 (57.54%), Query Frame = 1
Query: 481 NVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLG----DESTIIDVAEGMPAGSKN--ILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVP-LRGFAAGVALGALFGTVPIQLALGYALRDRPAT 996
+ PP+ YFL L+AAG GVP+SED + I VGT L NA + + + Y G+V+SD I +SIG RRG+ P+R+ +L + D++ D EG K +L +I R+G YVG R +VG+RGPM L GF+G FA G LGA F ++PIQL +GY + +T
Sbjct: 131 STPPMAYFLALIAAGFGVPISEDAMCILVGTSL-NALQEKQTRNTVLLALYTGIVLSDFITFSIGRALRRGVLEPIRKRVLGNENITTTDDANNNDKTEGKQRRRKRDRVLAKISRAGDYVGFVTRLSVGMRGPMILFTGFSGTTTFAKFAVGTILGA-FVSLPIQLWIGYRMSCAAST 307
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A1Y1I6Y9_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I6Y9_KLENI) HSP 1 Score: 108 bits (271), Expect = 3.380e-23 Identity = 87/274 (31.75%), Postives = 122/274 (44.53%), Query Frame = 1
Query: 337 LPWARGSPHIARTCAAGELSMSTSTSAISDIRRFFGASSISAVMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFT--TRHKV------------ACVAWCYAGVVISDLIPYSIG-CGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWLSRRKRRPRDV 1113
L W R SP A AG+ +A FGA + + + P + YF LMAAG G+ VSE+ L ++VG LG TR + + + W Y GV +SDLIP+ G +RG ES + A + +R+ G Y+G+ ERF++GVR P L GF+GV F GV G LF T+P+Q+ LG+ LRDRP A AA + +T P A A ++ +R + D
Sbjct: 17 LVWRRPSPAFA-AAVAGDQGAGAGGAAFK-----FGAFGLRGSLT--DRTPGLAYFALLMAAGCGLFVSEEALNVWVGGSLGRCLVLDGTREALMQSLRANWGYIASVIFWVYWGVCLSDLIPFYAGKWAAQRG---------------ESVTEKLGGTNQATLARVTSAVRKYGAYIGLVERFSLGVRNPTAFLAGFSGVSTSTFFIGVCAGGLF-TLPLQMGLGFVLRDRPVAALATVAAVVGTWTVVPYASAALAAAWFFVKQRLDKKGDA 266
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: J3LAC8_ORYBR (Uncharacterized protein n=4 Tax=Oryza TaxID=4527 RepID=J3LAC8_ORYBR) HSP 1 Score: 107 bits (268), Expect = 4.400e-22 Identity = 76/217 (35.02%), Postives = 111/217 (51.15%), Query Frame = 1
Query: 487 PPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNA------------NFTTR--HKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWLSRRK 1095
P YF LMAAG G+ +SE+ L ++VG L + +F+T + ++ V W Y GV ISD++P+ +G FR+ K D S+ I + + + +I +++ G +G ERF+VGVR P L G G+P + AGV G LF T+PIQLA+G+ LR+RP A AA + +T P A +LSRRK
Sbjct: 157 PGWVYFWLLMAAGFGLFISEEALNVWVGISLARSLCLDGTWPSLVNSFSTNASYIISTVLWVYWGVCISDMVPFYLGKLFRQ----------TKASEDISSKIGIGKEK---ALSISRAVQKYGNLIGFVERFSVGVRNPTGFLAGALGIPADCYFAGVCCGCLF-TLPIQLAVGFFLRERPVVALASVAAAVGMWTVFPYAAAACTALFFYLSRRK 359
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A6G1FFI5_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1FFI5_9ORYZ) HSP 1 Score: 105 bits (261), Expect = 4.460e-22 Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 1
Query: 499 YFLYLMAAGVGVPVSEDVLLIFVG--------------TLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWLSRRK 1095
YF LMAAG G+ +SE+ L ++VG +L+ + + + ++ V W Y GV ISD++P+ +G FR+ + D S+ I + + + +I +++ G +G ERF+VGVR P L G G+P + AGV G LF T+PIQLA+G+ LR+RP A AA + +T P A LSRRK
Sbjct: 42 YFWLLMAAGFGLFISEEALNVWVGISLARSLCLDGTWRSLVNSFSMNASYIISTVLWVYWGVCISDMVPFYLGKLFRQ----------TRASEDISSKIGIGKEK---ALSISRAVQKYGNLIGFVERFSVGVRNPTGFLAGALGIPADCYFAGVCCGCLF-TLPIQLAVGFFLRERPVVALASVAAAVGMWTVFPYAAAACTALFFCLSRRK 240 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19257.5330.1 >prot_H-elongata_contig19257.5330.1 ID=prot_H-elongata_contig19257.5330.1|Name=mRNA_H-elongata_contig19257.5330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=354bp MSHRKNMNNYVGLLFICIFVLVTMIPCSCFQLPGSDAGGLLQVRGMLDTSback to top mRNA from alignment at H-elongata_contig19257:3746..6704- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19257.5330.1 ID=mRNA_H-elongata_contig19257.5330.1|Name=mRNA_H-elongata_contig19257.5330.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2959bp|location=Sequence derived from alignment at H-elongata_contig19257:3746..6704- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19257:3746..6704- >mRNA_H-elongata_contig19257.5330.1 ID=mRNA_H-elongata_contig19257.5330.1|Name=mRNA_H-elongata_contig19257.5330.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2124bp|location=Sequence derived from alignment at H-elongata_contig19257:3746..6704- (Himanthalia elongata Himel1 dioecious)back to top |