mRNA_H-elongata_contig19254.5327.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19254.5327.1
Unique NamemRNA_H-elongata_contig19254.5327.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A6H5JCU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU9_9PHAE)

HSP 1 Score: 355 bits (911), Expect = 1.440e-118
Identity = 185/285 (64.91%), Postives = 215/285 (75.44%), Query Frame = 1
Query:    1 CRVGVFFAV-GIALLANEARAFVGVKGALRLTSCRMLT--------VLMTEQDAALQYPPIPSTVKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGHHAHEKLCEA-GVGLCVSDFLDSRLSSTLGL 825
            CR  +F +V  +A L + A AF      L  T               +  E  A  Q+P +P+TVKGIL DMDGTLTDSDTLHFE+YRETF+K+TP FN G  I+REYYD+WMSGNSNPAIVEKLFP+M  E QTALWK+KE+VYRKIS  MTPLPGL+ FL+ C+  GLAMILVTNAPRLDAVHTL +LGL D F ETMVIGYEC+RAKPHPDPYLEGLSRLGL A+ CVAFEDSVNGV+S+VSAGLYT GVG  + E+L    G G+CVSD+LDSRL + LG+
Sbjct:   35 CRTALFVSVFALAALCDIASAFFSPPVRLLTTXXXXXXXXXXGNSGAVSAESGATNQFPSLPATVKGILFDMDGTLTDSDTLHFEAYRETFLKVTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTPLPGLLKFLDCCQSEGLAMILVTNAPRLDAVHTLNILGLSDRFEETMVIGYECARAKPHPDPYLEGLSRLGLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLYAALGV 319          
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: D8LK30_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK30_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 5.200e-108
Identity = 160/214 (74.77%), Postives = 181/214 (84.58%), Query Frame = 1
Query:  187 MDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGHHAHEKLCEA-GVGLCVSDFLDSRLSSTLGL 825
            MDGTLTDSDTLHFE+YRETF+K+TP FN G  I+REYYD+WMSGNSNPAIVEKLFP+M  E QTALWK+KE+VYRKIS  MT LPGL+ FL+ C+  GLAMILVTNAPRLDAVHTL +LGL D F ETMVIGYEC RAKPHPDPYLEGLSRL L A+ CVAFEDSVNGV+S+VSAGLYT GVG  + E+L    G G+CVSD+LDSRL + LG+
Sbjct:    1 MDGTLTDSDTLHFEAYRETFLKLTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTLLPGLLEFLDGCQSEGLAMILVTNAPRLDAVHTLNILGLSDRFEETMVIGYECPRAKPHPDPYLEGLSRLDLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLHAALGV 214          
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A835ZE39_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE39_9STRA)

HSP 1 Score: 259 bits (661), Expect = 3.630e-81
Identity = 128/230 (55.65%), Postives = 162/230 (70.43%), Query Frame = 1
Query:  151 PIPSTVKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCR-----RAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGHHAHEK-LCEAGVGLCVSDFLDSRLSSTLG 822
            P P+ +KG L DMDGTL DSD LHFE+YR+  ++M P  N G PI + +Y EWMSGNSN  I  +LFPDM   +Q  +W  KE +YR+IS  M PLPGL   LE C      +A +A I+VTNAPRLDA HT++VLG+++ FG T+VIG EC+RAKPHP+PYLEGL RLGL A  C+AFEDS+NG  S+ +AGL+T+GV     E  L  AG G+C++DF D RL + LG
Sbjct:   60 PSPAHIKGCLFDMDGTLVDSDELHFEAYRDIILEMRPDHNGGKPIDKAWYKEWMSGNSNAVITARLFPDMPLAQQEEMWDRKEALYRRISTAMAPLPGLARLLEWCDLEDDDKARIATIIVTNAPRLDARHTMEVLGIHERFGNTVVIGAECARAKPHPEPYLEGLRRLGLAARDCIAFEDSLNGCRSATAAGLFTVGVTTGLDEAALRGAGAGVCIADFTDERLWALLG 289          
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A6U0VYW9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VYW9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 4.450e-57
Identity = 109/232 (46.98%), Postives = 146/232 (62.93%), Query Frame = 1
Query:  133 AALQYPPIPSTVKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKI-SIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGV--GHHAHEKLCEAGVGLCVSDFLDSRLSSTL 819
            A L+ P     ++GIL DMDGTLTDSD++HFE+Y+ T  ++ P   E   ITRE+YD+ MSG SN  IV K+ PD+  E+Q  +W  KE+ YR++ S  M    GL  FL+ C    L  I+VTNAPR DA+HTL +LGL+  F + +VIG EC  AKP P+PYLEGL +LGL A  C+AFEDS +G  S+++A L T+ V       E +   G  + V  F D+RL  +L
Sbjct:  149 AELRVPRTDVPLRGILFDMDGTLTDSDSVHFEAYKATLARLAPELPE---ITREFYDKEMSGQSNEIIVPKVLPDLSPEQQRQVWVQKEEEYRRLTSDSMQRFEGLDAFLQWCDSNSLKTIVVTNAPREDAMHTLTMLGLFGRFAKHVVIGMECKEAKPSPEPYLEGLRKLGLSASQCIAFEDSPSGAKSAIAAQLRTVAVLSSRSEEEMVATHGCVMGVRRFDDARLLESL 377          
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: W7TRE2_9STRA (Had family hydrolase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRE2_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.820e-56
Identity = 97/220 (44.09%), Postives = 146/220 (66.36%), Query Frame = 1
Query:  166 VKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGET-MVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGV-GHHAHEKLCEAGVGLCVSDFLDSRLSSTL 819
            +KGI  DMDGTLT+SD LHFE+YR+T +K  P +N+G P+ R +YD+ +SG++N  IV  L P   +++   LW +KE +YR+ S  ++PLPG++  L+ C    +  +LVTNAPR++ +HTL  L L D F ++ ++IG E +R KP PD Y EGL RLGL A+ C+AFEDS +G+ S+V+AG+ T+ V    +  ++ + G  + V DF +  L + L
Sbjct:   72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALL 291          
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A1X6NWD3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWD3_PORUM)

HSP 1 Score: 180 bits (456), Expect = 1.180e-50
Identity = 100/248 (40.32%), Postives = 145/248 (58.47%), Query Frame = 1
Query:   97 CRMLTVLMTEQDAALQYPPIPS---TVKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVY-RKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGH-HAHEKLCEAGVGLCVSDFLDSRLSSTLGL 825
            C  +   +  +DA    PPI +   T+  +L DMDGTL   D  HFE+Y +T ++M P FN G  ITRE+Y+  MSG  NP +++++ PD+  E+   +  +KE  Y R+ +  +  L G    L+    AG+ + +VTNAPR    HTL    L D F   +++G EC+RAKP PDPY++G   L ++    +AFEDS +G+TS+V+AGL TIGVG  H    L  AG    + D+ D RL++ LGL
Sbjct:   22 CGWVPGSLRRRDAMAGSPPISTQGGTLSAVLFDMDGTLVAGDDHHFEAYADTLLEMEPQFNGGKRITREFYNTRMSGRQNPVLLKEIMPDVSPERGVVIADTKERAYMRRTAGAIEALAGAAALLDVLAAAGVRLGVVTNAPREIMEHTLGEAALRDRF-PVVIVGDECARAKPFPDPYVDGCRALDVQPREAIAFEDSPSGITSAVAAGLLTIGVGTGHPPATLLAAGAAFVIHDYYDERLATVLGL 268          
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A0A7JIY9_9PSED (Haloacid dehalogenase n=2 Tax=Pseudomonas parafulva TaxID=157782 RepID=A0A0A7JIY9_9PSED)

HSP 1 Score: 168 bits (425), Expect = 7.680e-47
Identity = 90/212 (42.45%), Postives = 136/212 (64.15%), Query Frame = 1
Query:  175 ILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGH-HAHEKLCEAGVGLCVSDFLDSRL 807
            +L D+DGTLTD+DTLH +++R+         ++G  +T+  ++E +SG SN  + ++LFP     +  AL + KE ++R++S ++ PLPGL+  L    + GL M +VTNAPRL+A H LQ LGL + F E +++  E +R KP P PYL GL RL  KAE  +AFEDS+ GV ++V AG++T+ +      E+L +AG GL + D+ D RL
Sbjct:    5 LLFDLDGTLTDTDTLHLQAFRKLLHD-----HDGRELTQTQFNEQVSGRSNGLLFKELFPQADAAQCQALAERKEALFRELSPRLEPLPGLLRLLAHAEQQGLGMCVVTNAPRLNAEHMLQALGLIERF-EHVLVADELARPKPDPLPYLTGLQRLNAKAEQALAFEDSLPGVKAAVDAGIFTVALATTQPAERLLQAGAGLVIDDYQDPRL 210          
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A6L6T974_9PSED (HAD-IA family hydrolase n=6 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A6L6T974_9PSED)

HSP 1 Score: 163 bits (413), Expect = 4.260e-45
Identity = 90/212 (42.45%), Postives = 132/212 (62.26%), Query Frame = 1
Query:  175 ILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGH-HAHEKLCEAGVGLCVSDFLDSRL 807
            +L D+DGTLTD+DTLH +++R+   +     ++G  ++R  +D  +SG +N  +  +LF D   ++  AL   KE ++R ++  + P+PGL+  LE  +  GL M +VTNAPRL+A H LQ +GL   F E +++  E  RAKP P PYL GL RLG  A   +AFEDS+ GV ++  AG++T+GV      E+L EAG GL + DF D RL
Sbjct:    5 LLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSRAQFDAQVSGRANGELFAELFADASPQECLALADRKEALFRSLAPSLEPMPGLLRLLEHAQAYGLGMCVVTNAPRLNAEHMLQAMGLGARF-EHVLVAEELERAKPDPLPYLAGLQRLGAVAGQALAFEDSLPGVRAASGAGIFTVGVATTQTAERLMEAGAGLVIRDFDDPRL 210          
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A830D080_9LAMI (Haloacid dehalogenase-like hydrolase domain-containing protein sgpp n=2 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D080_9LAMI)

HSP 1 Score: 163 bits (413), Expect = 9.590e-45
Identity = 90/220 (40.91%), Postives = 135/220 (61.36%), Query Frame = 1
Query:  166 VKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIK-MTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGHHAHEK-LCEAGVGLCVSDFLDSRLSSTL 819
            ++ IL D+DGTL +SD +H+ +YRE F+++  GFN G PIT EYY + +SG  N  +   LFPD   E+       KE ++R+++ + + P+ GL    +     GL    VTNAPR +A   +++ GL  +F E ++IG EC RAKP PDPYL+ L +LG+ +E    FEDSV+G+ + V+AG+  +G+     EK L EAG  + + D+ DS L +TL
Sbjct:   14 LEAILFDIDGTLVNSDPIHYNAYREMFLEI--GFNGGEPITEEYYSKNLSGMHNEELCHILFPDWELERARKFLDDKEAMFRRLAAEQLKPVAGLDKLSKWVEDNGLKRAAVTNAPRDNAEMMIKMSGL-GNFFELLIIGSECERAKPFPDPYLKALEQLGVSSEHAFVFEDSVSGIKAGVAAGMPVVGLATGNPEKVLSEAGAAIVIKDYTDSNLWATL 230          
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A089WPI8_9PSED (Haloacid dehalogenase n=1 Tax=Pseudomonas cremoricolorata TaxID=157783 RepID=A0A089WPI8_9PSED)

HSP 1 Score: 162 bits (409), Expect = 1.480e-44
Identity = 89/218 (40.83%), Postives = 138/218 (63.30%), Query Frame = 1
Query:  169 KGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGH-HAHEKLCEAGVGLCVSDFLDSRLSSTL 819
            + +L D+DGTLTD+DTLH +++RE   +     ++G  +++  +D  +SG +N A+   LFP +   ++  L + KE ++R+ S ++ P+PGL+  LE  R   + + +VTNAPRL+A H L  +GL D+F E +++  E +RAKP P PYL GL RL  KA   +AFEDS+ GV ++V+AG+YT+ +      +KL EAG  L + DF D RL + L
Sbjct:    3 RALLFDLDGTLTDTDTLHLQAFRELLHE-----HDGRHLSQAEFDAKVSGRANAALFADLFPALSAAERQTLAERKEALFRERSPQLQPMPGLLRVLEHARTRHMGLCVVTNAPRLNAEHMLGAMGLGDAF-EHVLVAEELARAKPDPLPYLSGLQRLDAKAAEALAFEDSLPGVAAAVAAGIYTVALSTTQPAQKLREAGAQLVIEDFNDERLWALL 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCU9_9PHAE1.440e-11864.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK30_ECTSI5.200e-10874.77Haloacid dehalogenase-like hydrolase family protei... [more]
A0A835ZE39_9STRA3.630e-8155.65HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A6U0VYW9_9STRA4.450e-5746.98Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TRE2_9STRA1.820e-5644.09Had family hydrolase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A1X6NWD3_PORUM1.180e-5040.32Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A0A7JIY9_9PSED7.680e-4742.45Haloacid dehalogenase n=2 Tax=Pseudomonas parafulv... [more]
A0A6L6T974_9PSED4.260e-4542.45HAD-IA family hydrolase n=6 Tax=Pseudomonadaceae T... [more]
A0A830D080_9LAMI9.590e-4540.91Haloacid dehalogenase-like hydrolase domain-contai... [more]
A0A089WPI8_9PSED1.480e-4440.83Haloacid dehalogenase n=1 Tax=Pseudomonas cremoric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19254contigH-elongata_contig19254:1820..5987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.7
Seed ortholog evalue3.7e-86
Seed eggNOG ortholog2880.D8LK30
GOsGO:0003674,GO:0003824,GO:0003850,GO:0004346,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0042578,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050308,GO:0050309,GO:0071944
EggNOG free text desc.pseudouridine 5'-phosphatase activity
EggNOG OGsCOG0637@1,KOG2914@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhaloacid dehalogenase-like hydrolase family protein
Ec32 orthologEc-06_007970.1
Exons4
Model size1107
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19254.5327.1prot_H-elongata_contig19254.5327.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19254 1922..5720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930097.8292751-UTR-H-elongata_contig19254:1819..19211622930097.8292751-UTR-H-elongata_contig19254:1819..1921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19254 1820..1921 +
1691679278.9792917-UTR-H-elongata_contig19254:1819..19211691679278.9792917-UTR-H-elongata_contig19254:1819..1921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19254 1820..1921 +
1622930097.909936-UTR-H-elongata_contig19254:5720..59871622930097.909936-UTR-H-elongata_contig19254:5720..5987Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19254 5721..5987 +
1691679279.0284615-UTR-H-elongata_contig19254:5720..59871691679279.0284615-UTR-H-elongata_contig19254:5720..5987Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19254 5721..5987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930097.8463454-CDS-H-elongata_contig19254:1921..20711622930097.8463454-CDS-H-elongata_contig19254:1921..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19254 1922..2071 +
1691679278.996744-CDS-H-elongata_contig19254:1921..20711691679278.996744-CDS-H-elongata_contig19254:1921..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19254 1922..2071 +
1622930097.863774-CDS-H-elongata_contig19254:2433..25181622930097.863774-CDS-H-elongata_contig19254:2433..2518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19254 2434..2518 +
1691679279.0056217-CDS-H-elongata_contig19254:2433..25181691679279.0056217-CDS-H-elongata_contig19254:2433..2518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19254 2434..2518 +
1622930097.87812-CDS-H-elongata_contig19254:2849..30691622930097.87812-CDS-H-elongata_contig19254:2849..3069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19254 2850..3069 +
1691679279.0130122-CDS-H-elongata_contig19254:2849..30691691679279.0130122-CDS-H-elongata_contig19254:2849..3069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19254 2850..3069 +
1622930097.8922055-CDS-H-elongata_contig19254:5437..57201622930097.8922055-CDS-H-elongata_contig19254:5437..5720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19254 5438..5720 +
1691679279.0205545-CDS-H-elongata_contig19254:5437..57201691679279.0205545-CDS-H-elongata_contig19254:5437..5720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19254 5438..5720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19254.5327.1

>prot_H-elongata_contig19254.5327.1 ID=prot_H-elongata_contig19254.5327.1|Name=mRNA_H-elongata_contig19254.5327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp
MLTVLMTEQDAALQYPPIPSTVKGILLDMDGTLTDSDTLHFESYRETFIK
MTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKED
VYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLY
DSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSS
VSAGLYTIGVGHHAHEKLCEAGVGLCVSDFLDSRLSSTLGLGGSE*
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mRNA from alignment at H-elongata_contig19254:1820..5987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19254.5327.1 ID=mRNA_H-elongata_contig19254.5327.1|Name=mRNA_H-elongata_contig19254.5327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4168bp|location=Sequence derived from alignment at H-elongata_contig19254:1820..5987+ (Himanthalia elongata Himel1 dioecious)
TGCCGGGTTGGTGTTTTTTTTGCCGTTGGTATTGCATTGCTCGCTAACGA AGCCCGCGCTTTCGTAGGAGTCAAGGGTGCGTTACGACTCACATCCTGCC GGATGCTTACTGTTCTAATGACTGAACAAGACGCGGCGCTGCAGTATCCT CCCATACCGTCGACTGTAAAGGGCATCCTGTTGGACATGGATGGGACTCT TACCGACAGTGATACTTTGCACTTCGAATCATATCGTGAGACTTTCATTA AGGTGTGTATTAGCCAACCTTCTGCAGCCGGCCTTGAACTAATTTCCCCT CTAGAGGTATGCAGCGTTTTGGGATATCACCAGCACATCGCCGCCTGGCA CCTATGAAAGATGACAAAAAATTATCTAGCCTGGCACACCTCGAGACGCG GTCAAAATCAGCACACATTATATCTGGCAAACGTCAAGTTATATGCTGTC ATACTTGCGTAGCTTATGAGCGTGGGATCCCTCGTCGTAAGAGACTCTGC GCCGTTGAACTCAGTTCTTAGTCATTCGTATCTCATACTATGTGGCATCA TCCCTGTCTGACGTAATAATTTTGAAGAAATCCCTGAATCTTGGATCCCA ATCTGGGATGACAGATGACTCCTGGTTTCAACGAAGGCAATCCCATTACA AGGGAGTACTATGATGAATGGATGTCGGGCAACAGCAATCCCGCCATAGG TCAGTTTATCGCTCCACTTTTGGCTCACGCTAGCTTCCCTACGAAAAACA TCTCCCCGCGTGCTTTTATGCACAAAACTTAAAAATACTTCCTGAGCGCC TCTAAATAAGTGAAGACATGTACACATGTCACTTCTCGACGTGTCCTATC GTATTATACCTAGGTTTATAGATGTTCTGAGTAATGACATGGTGATTGCG TCAGTATTGAGTGTGGTGACCGCATCCTTCTCCCATCGAGTGACAGAAAG TGAAATGATAAGTGTTTATGTGTTTGCTGGATTTGTGACCTGGTGTCACC CCGCGCCCATGATCGTCTCCCCACACGTAGTTGAAAAGCTCTTCCCAGAC ATGCACAAGGAGAAACAGACCGCCTTATGGAAGTCCAAGGAAGACGTCTA CAGGAAGATCTCCATCAAGATGACGCCATTGCCGGGGTTGGTCGTCTTTC TCGAGCGCTGTAGGAGGGCCGGATTGGCAATGATCCTCGTCACCAATGCA CCGCGGTTGGATGCGGTGCACACATTGCAAGTGCTGGGCCTCTACGACAG GTGAGGTTTCTCGAAGATCGAGCAAGCAATCGTGTGTAACATGGCTCGAT TGATGGATCGACGAAAACAGCGTTACACAACCGTTAAACAACAATACAAC TAGGGCCACTTTCCCTTCCTCAAACTTCGACACTCCACTGTACGCATGCA GCCGACATGACCCAGCTCAGTCATGTTTGGCTCTTTCATCACGTTCTTCT TCTCACAGGTCAAGCGATTAGTGCCGTCTAACGCAACTCAATCAATCTTT AGAACCATCCAACGATAGGGATGGAGGGAAATTGCTTGAGCGTCCCCGAG TCGGGGAGTGGGCGGTTAAAATTCGTTGCGGACAAAGCATGCCCTATATA TCCTCTACGGTGATCACGTATACCACCTGAAGCGCTCTACGACAGGGGAT ACGACGATTTGATCCCCAGGAAGGAACGAATTTTAGATATTTCTCTCCCC AAACCAGGGACGCTTTAGGCAATTTTCTCTTGACATATCTTGGATATCGA TTAATACAACGACAGCGGTCTCAAACAGCAGTAGTACAGCTAGCTAGGGC CACTTTCCCTTTTTAAAGTATTTGACACCCCACTGTACGCGTATAGCAGA CATGACTCAGCTCGACATTATTTGGCGCTTCCCTTAGATACTCGGCACCC GGTACTCGGCACTCGGTACTACAGTTCTAATGCGGTATTATCCTGGATAA AGAGCATTGGAACAATGTAATGACACTATAGATAGAGGCAGTGGACACTT GCTGCGAAGGAAGTATTAGTAAGTGATAGTAAAGTCCCGACGAAGTAGTA GATGGATTGATAAGGTGTTAATTAATAACGAGATTGAGTACGTATGGAAC ATGGTACGTAAGGAACATGAGTGGAGACGTAGCTGTCTTTTATTCATTAC ATTACCCGATATCGTGTCCTAGAGATATTGCCAATATCTAGAGACTCTAA GAACCTTCCAGTAGCTTTCCTTCTAATCACCTGGTCCGCAGATCTTTGGG CTTATCGGTTAACTTCGACCCAAGAACTAGATTGATAATTACGGTACTGT ATATGCTATATTGTAGTTCTTATCAGTCAAAACTCCCTGGTCTATTCGAG ATACGTAGAGCAACGTAGATGCCTTATAATAACGCAATTTTAAAGGGAAA ATAGTTTTTGAGGGGAAAACTCAGCTGAAAGTATGCGGGGATTTTCTGGG AAGCGGCCGCCCACTTTTCTGGAACACCCATAATGGAACTCTTTAATCCG AACACCAATAATCTTCGCTAGCTGGGGTAGCAGGAGGTATCGCTTCGGTT GCGCAGCGAGAGCGTATGTAACCCGCTTCCAGCAACAAACAACATGAACC GCGCGAAATGTATGGTGGTGCTTGATGAAGACCTCAGCGGTTTTGATCGG AATGCTCTGACTTCTTAAGCATATGTACTGAAAACGAGTCTGCCCAACTT GGATACGCGATATGCTTATCTCGGAGTCCTCGTTTCTTCCGGGGAAAACT GCCCCTTCGCCGCAGCTGCTCCTCCTGATATATTTTTCTTTATTTTCTAT GTCGTATCTGTAACGGCAGTCACAGGAATCAAACCTCTTGAGCATCTGGG CAGAGATCGCGTCTGCCTAGCTTGGACGCTGCTCGCATCCAAGCTTCTCT TTCTTCGAGGAGAGAACCTCCTCCGTAATTACTACATTCCTCTTTTCCGC ATTACAGTTACATTAGCGGTAACAGTCACAGCAGCAGCAATTGCGGTGGC GTCACTATAACATCGCTCGATGGGGTGACTCGCGAATATGGAAATGAGGC TAGCAAACACGACAGCTCGGACTAAGTTCTATACAATACTTGAATGTTTT TAAAGGGTGTTTTAGACAGCTGGGCGGTTATATCGTTGACAATTCTATGT GGCAAACATTATGTGGTGAGTTCACCCCGAATTTGTCACTTGATTTGTCA ACTTGGAATACCGCAATCAAATCTGTGCCGACACTCGTGGGGTAGACTCT CGAAAATGTTGTGCCATTGCATCACTTCGGCGCGTCGTTCCCATGTTTTC AAAATTAAAAATTTGGGTCCTTTTAAACGACGAAGGAGTAGGTAAGTGGC AGGAAACTGTTTTGTTTTGTTTTGTTTTGAACGAAACGGAGTTAGGAGGC AATATTTTAGCAGACACTTAATCGTGAAGCGCGTGATCTGTTTATTTCGA AAAAGGGAGGAATCAATGTAAATGCATCTACCCGCCAATCACACTTGCTC TGCGAAATCCAAACTCGAAAGTAGAGGACAGCCCATTCAAACACATTGGT CACTTAACCCGATTTTCGGTGTCCTGATCAATACTTCTATATATTTCCTT GTATGCACCACGACATAGCTTCGGCGAGACGATGGTTATCGGCTACGAGT GCTCCCGGGCCAAGCCGCACCCAGACCCCTACCTGGAAGGCTTATCGAGA CTTGGCCTCAAGGCGGAATGCTGCGTTGCGTTTGAGGACAGCGTGAACGG CGTGACTTCATCTGTTTCCGCCGGACTGTACACGATCGGGGTGGGGCACC ATGCTCATGAAAAGTTGTGCGAAGCTGGCGTGGGACTGTGCGTGTCAGAC TTTTTGGATAGTAGACTCTCCAGCACGCTCGGACTCGGTGGTTCAGAGTA ATAGGAAAATATTTACTTGTGGTGCGTACGATTTCCACCCAGATCTTGAT TTTGTATGATGATATACCCTGAGCGACATCCTACAGTAACATAAACTTTC TCGAATTTAAATCGTTTCATTTGTTTCCTACAAAGGAGGAATCATGCAAA AATTATGACAGCGGTGGTTGTTCACGCGATGCTACTATCATCGAGGGACA CTAATTTGTATTGTGCCGTTCATTGCTTGAGGAAATGGGGAAGGCGAGGG AAGGATTCTCATTGATGT
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Coding sequence (CDS) from alignment at H-elongata_contig19254:1820..5987+

>mRNA_H-elongata_contig19254.5327.1 ID=mRNA_H-elongata_contig19254.5327.1|Name=mRNA_H-elongata_contig19254.5327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at H-elongata_contig19254:1820..5987+ (Himanthalia elongata Himel1 dioecious)
ATGCTTACTGTTCTAATGACTGAACAAGACGCGGCGCTGCAGTATCCTCC
CATACCGTCGACTGTAAAGGGCATCCTGTTGGACATGGATGGGACTCTTA
CCGACAGTGATACTTTGCACTTCGAATCATATCGTGAGACTTTCATTAAG
ATGCTTACTGTTCTAATGACTGAACAAGACGCGGCGCTGCAGTATCCTCC
CATACCGTCGACTGTAAAGGGCATCCTGTTGGACATGGATGGGACTCTTA
CCGACAGTGATACTTTGCACTTCGAATCATATCGTGAGACTTTCATTAAG
ATGACTCCTGGTTTCAACGAAGGCAATCCCATTACAAGGGAGTACTATGA
TGAATGGATGTCGGGCAACAGCAATCCCGCCATAGATGACTCCTGGTTTC
AACGAAGGCAATCCCATTACAAGGGAGTACTATGATGAATGGATGTCGGG
CAACAGCAATCCCGCCATAGTTGAAAAGCTCTTCCCAGACATGCACAAGG
AGAAACAGACCGCCTTATGGAAGTCCAAGGAAGACGTCTACAGGAAGATC
TCCATCAAGATGACGCCATTGCCGGGGTTGGTCGTCTTTCTCGAGCGCTG
TAGGAGGGCCGGATTGGCAATGATCCTCGTCACCAATGCACCGCGGTTGG
ATGCGGTGCACACATTGCAAGTGCTGGGCCTCTACGACAGTTGAAAAGCT
CTTCCCAGACATGCACAAGGAGAAACAGACCGCCTTATGGAAGTCCAAGG
AAGACGTCTACAGGAAGATCTCCATCAAGATGACGCCATTGCCGGGGTTG
GTCGTCTTTCTCGAGCGCTGTAGGAGGGCCGGATTGGCAATGATCCTCGT
CACCAATGCACCGCGGTTGGATGCGGTGCACACATTGCAAGTGCTGGGCC
TCTACGACAGCTTCGGCGAGACGATGGTTATCGGCTACGAGTGCTCCCGG
GCCAAGCCGCACCCAGACCCCTACCTGGAAGGCTTATCGAGACTTGGCCT
CAAGGCGGAATGCTGCGTTGCGTTTGAGGACAGCGTGAACGGCGTGACTT
CATCTGTTTCCGCCGGACTGTACACGATCGGGGTGGGGCACCATGCTCAT
GAAAAGTTGTGCGAAGCTGGCGTGGGACTGTGCGTGTCAGACTTTTTGGA
TAGTAGACTCTCCAGCACGCTCGGACTCGGTGGTTCAGAGTAACTTCGGC
GAGACGATGGTTATCGGCTACGAGTGCTCCCGGGCCAAGCCGCACCCAGA
CCCCTACCTGGAAGGCTTATCGAGACTTGGCCTCAAGGCGGAATGCTGCG
TTGCGTTTGAGGACAGCGTGAACGGCGTGACTTCATCTGTTTCCGCCGGA
CTGTACACGATCGGGGTGGGGCACCATGCTCATGAAAAGTTGTGCGAAGC
TGGCGTGGGACTGTGCGTGTCAGACTTTTTGGATAGTAGACTCTCCAGCA
CGCTCGGACTCGGTGGTTCAGAGTAA
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