mRNA_H-elongata_contig19254.5327.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A6H5JCU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU9_9PHAE) HSP 1 Score: 355 bits (911), Expect = 1.440e-118 Identity = 185/285 (64.91%), Postives = 215/285 (75.44%), Query Frame = 1
Query: 1 CRVGVFFAV-GIALLANEARAFVGVKGALRLTSCRMLT--------VLMTEQDAALQYPPIPSTVKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGHHAHEKLCEA-GVGLCVSDFLDSRLSSTLGL 825
CR +F +V +A L + A AF L T + E A Q+P +P+TVKGIL DMDGTLTDSDTLHFE+YRETF+K+TP FN G I+REYYD+WMSGNSNPAIVEKLFP+M E QTALWK+KE+VYRKIS MTPLPGL+ FL+ C+ GLAMILVTNAPRLDAVHTL +LGL D F ETMVIGYEC+RAKPHPDPYLEGLSRLGL A+ CVAFEDSVNGV+S+VSAGLYT GVG + E+L G G+CVSD+LDSRL + LG+
Sbjct: 35 CRTALFVSVFALAALCDIASAFFSPPVRLLTTXXXXXXXXXXGNSGAVSAESGATNQFPSLPATVKGILFDMDGTLTDSDTLHFEAYRETFLKVTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTPLPGLLKFLDCCQSEGLAMILVTNAPRLDAVHTLNILGLSDRFEETMVIGYECARAKPHPDPYLEGLSRLGLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLYAALGV 319
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: D8LK30_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK30_ECTSI) HSP 1 Score: 324 bits (831), Expect = 5.200e-108 Identity = 160/214 (74.77%), Postives = 181/214 (84.58%), Query Frame = 1
Query: 187 MDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGHHAHEKLCEA-GVGLCVSDFLDSRLSSTLGL 825
MDGTLTDSDTLHFE+YRETF+K+TP FN G I+REYYD+WMSGNSNPAIVEKLFP+M E QTALWK+KE+VYRKIS MT LPGL+ FL+ C+ GLAMILVTNAPRLDAVHTL +LGL D F ETMVIGYEC RAKPHPDPYLEGLSRL L A+ CVAFEDSVNGV+S+VSAGLYT GVG + E+L G G+CVSD+LDSRL + LG+
Sbjct: 1 MDGTLTDSDTLHFEAYRETFLKLTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTLLPGLLEFLDGCQSEGLAMILVTNAPRLDAVHTLNILGLSDRFEETMVIGYECPRAKPHPDPYLEGLSRLDLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLHAALGV 214
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A835ZE39_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE39_9STRA) HSP 1 Score: 259 bits (661), Expect = 3.630e-81 Identity = 128/230 (55.65%), Postives = 162/230 (70.43%), Query Frame = 1
Query: 151 PIPSTVKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCR-----RAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGHHAHEK-LCEAGVGLCVSDFLDSRLSSTLG 822
P P+ +KG L DMDGTL DSD LHFE+YR+ ++M P N G PI + +Y EWMSGNSN I +LFPDM +Q +W KE +YR+IS M PLPGL LE C +A +A I+VTNAPRLDA HT++VLG+++ FG T+VIG EC+RAKPHP+PYLEGL RLGL A C+AFEDS+NG S+ +AGL+T+GV E L AG G+C++DF D RL + LG
Sbjct: 60 PSPAHIKGCLFDMDGTLVDSDELHFEAYRDIILEMRPDHNGGKPIDKAWYKEWMSGNSNAVITARLFPDMPLAQQEEMWDRKEALYRRISTAMAPLPGLARLLEWCDLEDDDKARIATIIVTNAPRLDARHTMEVLGIHERFGNTVVIGAECARAKPHPEPYLEGLRRLGLAARDCIAFEDSLNGCRSATAAGLFTVGVTTGLDEAALRGAGAGVCIADFTDERLWALLG 289
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A6U0VYW9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VYW9_9STRA) HSP 1 Score: 199 bits (507), Expect = 4.450e-57 Identity = 109/232 (46.98%), Postives = 146/232 (62.93%), Query Frame = 1
Query: 133 AALQYPPIPSTVKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKI-SIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGV--GHHAHEKLCEAGVGLCVSDFLDSRLSSTL 819
A L+ P ++GIL DMDGTLTDSD++HFE+Y+ T ++ P E ITRE+YD+ MSG SN IV K+ PD+ E+Q +W KE+ YR++ S M GL FL+ C L I+VTNAPR DA+HTL +LGL+ F + +VIG EC AKP P+PYLEGL +LGL A C+AFEDS +G S+++A L T+ V E + G + V F D+RL +L
Sbjct: 149 AELRVPRTDVPLRGILFDMDGTLTDSDSVHFEAYKATLARLAPELPE---ITREFYDKEMSGQSNEIIVPKVLPDLSPEQQRQVWVQKEEEYRRLTSDSMQRFEGLDAFLQWCDSNSLKTIVVTNAPREDAMHTLTMLGLFGRFAKHVVIGMECKEAKPSPEPYLEGLRKLGLSASQCIAFEDSPSGAKSAIAAQLRTVAVLSSRSEEEMVATHGCVMGVRRFDDARLLESL 377
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: W7TRE2_9STRA (Had family hydrolase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRE2_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.820e-56 Identity = 97/220 (44.09%), Postives = 146/220 (66.36%), Query Frame = 1
Query: 166 VKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGET-MVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGV-GHHAHEKLCEAGVGLCVSDFLDSRLSSTL 819
+KGI DMDGTLT+SD LHFE+YR+T +K P +N+G P+ R +YD+ +SG++N IV L P +++ LW +KE +YR+ S ++PLPG++ L+ C + +LVTNAPR++ +HTL L L D F ++ ++IG E +R KP PD Y EGL RLGL A+ C+AFEDS +G+ S+V+AG+ T+ V + ++ + G + V DF + L + L
Sbjct: 72 IKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAVLTSRSEAEMIDRGAFMSVKDFDEPSLWALL 291
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A1X6NWD3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWD3_PORUM) HSP 1 Score: 180 bits (456), Expect = 1.180e-50 Identity = 100/248 (40.32%), Postives = 145/248 (58.47%), Query Frame = 1
Query: 97 CRMLTVLMTEQDAALQYPPIPS---TVKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVY-RKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGH-HAHEKLCEAGVGLCVSDFLDSRLSSTLGL 825
C + + +DA PPI + T+ +L DMDGTL D HFE+Y +T ++M P FN G ITRE+Y+ MSG NP +++++ PD+ E+ + +KE Y R+ + + L G L+ AG+ + +VTNAPR HTL L D F +++G EC+RAKP PDPY++G L ++ +AFEDS +G+TS+V+AGL TIGVG H L AG + D+ D RL++ LGL
Sbjct: 22 CGWVPGSLRRRDAMAGSPPISTQGGTLSAVLFDMDGTLVAGDDHHFEAYADTLLEMEPQFNGGKRITREFYNTRMSGRQNPVLLKEIMPDVSPERGVVIADTKERAYMRRTAGAIEALAGAAALLDVLAAAGVRLGVVTNAPREIMEHTLGEAALRDRF-PVVIVGDECARAKPFPDPYVDGCRALDVQPREAIAFEDSPSGITSAVAAGLLTIGVGTGHPPATLLAAGAAFVIHDYYDERLATVLGL 268
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A0A7JIY9_9PSED (Haloacid dehalogenase n=2 Tax=Pseudomonas parafulva TaxID=157782 RepID=A0A0A7JIY9_9PSED) HSP 1 Score: 168 bits (425), Expect = 7.680e-47 Identity = 90/212 (42.45%), Postives = 136/212 (64.15%), Query Frame = 1
Query: 175 ILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGH-HAHEKLCEAGVGLCVSDFLDSRL 807
+L D+DGTLTD+DTLH +++R+ ++G +T+ ++E +SG SN + ++LFP + AL + KE ++R++S ++ PLPGL+ L + GL M +VTNAPRL+A H LQ LGL + F E +++ E +R KP P PYL GL RL KAE +AFEDS+ GV ++V AG++T+ + E+L +AG GL + D+ D RL
Sbjct: 5 LLFDLDGTLTDTDTLHLQAFRKLLHD-----HDGRELTQTQFNEQVSGRSNGLLFKELFPQADAAQCQALAERKEALFRELSPRLEPLPGLLRLLAHAEQQGLGMCVVTNAPRLNAEHMLQALGLIERF-EHVLVADELARPKPDPLPYLTGLQRLNAKAEQALAFEDSLPGVKAAVDAGIFTVALATTQPAERLLQAGAGLVIDDYQDPRL 210
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A6L6T974_9PSED (HAD-IA family hydrolase n=6 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A6L6T974_9PSED) HSP 1 Score: 163 bits (413), Expect = 4.260e-45 Identity = 90/212 (42.45%), Postives = 132/212 (62.26%), Query Frame = 1
Query: 175 ILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGH-HAHEKLCEAGVGLCVSDFLDSRL 807
+L D+DGTLTD+DTLH +++R+ + ++G ++R +D +SG +N + +LF D ++ AL KE ++R ++ + P+PGL+ LE + GL M +VTNAPRL+A H LQ +GL F E +++ E RAKP P PYL GL RLG A +AFEDS+ GV ++ AG++T+GV E+L EAG GL + DF D RL
Sbjct: 5 LLFDLDGTLTDTDTLHLQAFRQLLRE-----HDGRELSRAQFDAQVSGRANGELFAELFADASPQECLALADRKEALFRSLAPSLEPMPGLLRLLEHAQAYGLGMCVVTNAPRLNAEHMLQAMGLGARF-EHVLVAEELERAKPDPLPYLAGLQRLGAVAGQALAFEDSLPGVRAASGAGIFTVGVATTQTAERLMEAGAGLVIRDFDDPRL 210
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A830D080_9LAMI (Haloacid dehalogenase-like hydrolase domain-containing protein sgpp n=2 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D080_9LAMI) HSP 1 Score: 163 bits (413), Expect = 9.590e-45 Identity = 90/220 (40.91%), Postives = 135/220 (61.36%), Query Frame = 1
Query: 166 VKGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIK-MTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGHHAHEK-LCEAGVGLCVSDFLDSRLSSTL 819
++ IL D+DGTL +SD +H+ +YRE F+++ GFN G PIT EYY + +SG N + LFPD E+ KE ++R+++ + + P+ GL + GL VTNAPR +A +++ GL +F E ++IG EC RAKP PDPYL+ L +LG+ +E FEDSV+G+ + V+AG+ +G+ EK L EAG + + D+ DS L +TL
Sbjct: 14 LEAILFDIDGTLVNSDPIHYNAYREMFLEI--GFNGGEPITEEYYSKNLSGMHNEELCHILFPDWELERARKFLDDKEAMFRRLAAEQLKPVAGLDKLSKWVEDNGLKRAAVTNAPRDNAEMMIKMSGL-GNFFELLIIGSECERAKPFPDPYLKALEQLGVSSEHAFVFEDSVSGIKAGVAAGMPVVGLATGNPEKVLSEAGAAIVIKDYTDSNLWATL 230
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Match: A0A089WPI8_9PSED (Haloacid dehalogenase n=1 Tax=Pseudomonas cremoricolorata TaxID=157783 RepID=A0A089WPI8_9PSED) HSP 1 Score: 162 bits (409), Expect = 1.480e-44 Identity = 89/218 (40.83%), Postives = 138/218 (63.30%), Query Frame = 1
Query: 169 KGILLDMDGTLTDSDTLHFESYRETFIKMTPGFNEGNPITREYYDEWMSGNSNPAIVEKLFPDMHKEKQTALWKSKEDVYRKISIKMTPLPGLVVFLERCRRAGLAMILVTNAPRLDAVHTLQVLGLYDSFGETMVIGYECSRAKPHPDPYLEGLSRLGLKAECCVAFEDSVNGVTSSVSAGLYTIGVGH-HAHEKLCEAGVGLCVSDFLDSRLSSTL 819
+ +L D+DGTLTD+DTLH +++RE + ++G +++ +D +SG +N A+ LFP + ++ L + KE ++R+ S ++ P+PGL+ LE R + + +VTNAPRL+A H L +GL D+F E +++ E +RAKP P PYL GL RL KA +AFEDS+ GV ++V+AG+YT+ + +KL EAG L + DF D RL + L
Sbjct: 3 RALLFDLDGTLTDTDTLHLQAFRELLHE-----HDGRHLSQAEFDAKVSGRANAALFADLFPALSAAERQTLAERKEALFRERSPQLQPMPGLLRVLEHARTRHMGLCVVTNAPRLNAEHMLGAMGLGDAF-EHVLVAEELARAKPDPLPYLSGLQRLDAKAAEALAFEDSLPGVAAAVAAGIYTVALSTTQPAQKLREAGAQLVIEDFNDERLWALL 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19254.5327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19254.5327.1 >prot_H-elongata_contig19254.5327.1 ID=prot_H-elongata_contig19254.5327.1|Name=mRNA_H-elongata_contig19254.5327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp MLTVLMTEQDAALQYPPIPSTVKGILLDMDGTLTDSDTLHFESYRETFIKback to top mRNA from alignment at H-elongata_contig19254:1820..5987+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19254.5327.1 ID=mRNA_H-elongata_contig19254.5327.1|Name=mRNA_H-elongata_contig19254.5327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4168bp|location=Sequence derived from alignment at H-elongata_contig19254:1820..5987+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19254:1820..5987+ >mRNA_H-elongata_contig19254.5327.1 ID=mRNA_H-elongata_contig19254.5327.1|Name=mRNA_H-elongata_contig19254.5327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at H-elongata_contig19254:1820..5987+ (Himanthalia elongata Himel1 dioecious)back to top |