mRNA_H-elongata_contig192354.5323.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig192354.5323.1
Unique NamemRNA_H-elongata_contig192354.5323.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192354.5323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192354contigH-elongata_contig192354:533..1111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192354.5323.1prot_H-elongata_contig192354.5323.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig192354 689..1018 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930096.6054296-UTR-H-elongata_contig192354:532..6881622930096.6054296-UTR-H-elongata_contig192354:532..688Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig192354 533..688 +
1691679278.8271084-UTR-H-elongata_contig192354:532..6881691679278.8271084-UTR-H-elongata_contig192354:532..688Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig192354 533..688 +
1622930096.6343956-UTR-H-elongata_contig192354:1018..11111622930096.6343956-UTR-H-elongata_contig192354:1018..1111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig192354 1019..1111 +
1691679278.846985-UTR-H-elongata_contig192354:1018..11111691679278.846985-UTR-H-elongata_contig192354:1018..1111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig192354 1019..1111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930096.6206903-CDS-H-elongata_contig192354:688..10181622930096.6206903-CDS-H-elongata_contig192354:688..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192354 689..1018 +
1691679278.8387322-CDS-H-elongata_contig192354:688..10181691679278.8387322-CDS-H-elongata_contig192354:688..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192354 689..1018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig192354.5323.1

>prot_H-elongata_contig192354.5323.1 ID=prot_H-elongata_contig192354.5323.1|Name=mRNA_H-elongata_contig192354.5323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MGQDLWTRPDREASKKRIEFFKERNKIADFDPHSRHLFLVSVFWWVGEGN
GALFSWGGRKRLSEIIALDIITAQMGEMIVHAHDLEYRHVPKGNVRQGWE
DRCAICVRA*
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mRNA from alignment at H-elongata_contig192354:533..1111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig192354.5323.1 ID=mRNA_H-elongata_contig192354.5323.1|Name=mRNA_H-elongata_contig192354.5323.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at H-elongata_contig192354:533..1111+ (Himanthalia elongata Himel1 dioecious)
AGATTAATAAAAATGTTGGATTTTTTAATTTATTTTCTTTATTTTTTTTA
ATAGTGGGAGGACGGATTAAGGAGTAGCGGTGGAGAGGGGGGGGGTATAT
AATCCTTATATAATTTGGGGATACGGCCTCGTTTTTTAGAAACACGGGAG
GAAATTATGGGACAAGACTTGTGGACCAGACCAGACCGAGAGGCTTCAAA
GAAACGAATCGAATTTTTCAAGGAGAGAAATAAAATCGCTGATTTCGACC
CTCATTCTCGTCATTTGTTCCTTGTTAGCGTTTTTTGGTGGGTGGGTGAA
GGCAACGGTGCGTTATTTTCATGGGGAGGGCGAAAGCGTCTGAGTGAAAT
CATTGCCTTGGATATAATCACGGCCCAAATGGGAGAGATGATTGTGCATG
CACATGATCTAGAATATAGGCACGTGCCGAAGGGGAACGTTCGGCAGGGG
TGGGAGGACCGTTGTGCGATTTGTGTGCGTGCTTGATTAATTTTGCTGTG
TAGAGGGTGTGACGTTGATCGTGTCGGATGTCCTTGGCCATCTGAATCGA
TCGATCGCGGCACACCAAGCCCTGGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig192354:533..1111+

>mRNA_H-elongata_contig192354.5323.1 ID=mRNA_H-elongata_contig192354.5323.1|Name=mRNA_H-elongata_contig192354.5323.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig192354:533..1111+ (Himanthalia elongata Himel1 dioecious)
ATGGGACAAGACTTGTGGACCAGACCAGACCGAGAGGCTTCAAAGAAACG
AATCGAATTTTTCAAGGAGAGAAATAAAATCGCTGATTTCGACCCTCATT
CTCGTCATTTGTTCCTTGTTAGCGTTTTTTGGTGGGTGGGTGAAGGCAAC
GGTGCGTTATTTTCATGGGGAGGGCGAAAGCGTCTGAGTGAAATCATTGC
CTTGGATATAATCACGGCCCAAATGGGAGAGATGATTGTGCATGCACATG
ATCTAGAATATAGGCACGTGCCGAAGGGGAACGTTCGGCAGGGGTGGGAG
GACCGTTGTGCGATTTGTGTGCGTGCTTGAATGGGACAAGACTTGTGGAC
CAGACCAGACCGAGAGGCTTCAAAGAAACGAATCGAATTTTTCAAGGAGA
GAAATAAAATCGCTGATTTCGACCCTCATTCTCGTCATTTGTTCCTTGTT
AGCGTTTTTTGGTGGGTGGGTGAAGGCAACGGTGCGTTATTTTCATGGGG
AGGGCGAAAGCGTCTGAGTGAAATCATTGCCTTGGATATAATCACGGCCC
AAATGGGAGAGATGATTGTGCATGCACATGATCTAGAATATAGGCACGTG
CCGAAGGGGAACGTTCGGCAGGGGTGGGAGGACCGTTGTGCGATTTGTGT
GCGTGCTTGA
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