mRNA_H-elongata_contig19231.5321.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19231.5321.1
Unique NamemRNA_H-elongata_contig19231.5321.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: D7G6D3_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D3_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 5.200e-118
Identity = 192/218 (88.07%), Postives = 203/218 (93.12%), Query Frame = 1 
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 654
            LQNG+DEDRRRLAVYCIKDA LPM+LMEKL+V+VNYIEMARVTGVPL+FLLSRGQQIKVFSMLLRK R+V LLIPN+P    HA  QETYEGATVIEPKKA Y+EPIATLDFASLYPSIMQAYNLCYSTLV   DKNKLKPDQY TSPSGDVFVKSEVTKGLLPAIL+ELL+ARKQAKRDMAAATDPMEKAVQNGRQLALKV ANS+YGFTGATVGQL
Sbjct:  503 LQNGSDEDRRRLAVYCIKDALLPMKLMEKLSVMVNYIEMARVTGVPLNFLLSRGQQIKVFSMLLRKTRSVNLLIPNLPK---HAVDQETYEGATVIEPKKAFYEEPIATLDFASLYPSIMQAYNLCYSTLVAGEDKNKLKPDQYLTSPSGDVFVKSEVTKGLLPAILDELLTARKQAKRDMAAATDPMEKAVQNGRQLALKVSANSVYGFTGATVGQL 717
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BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A6H5KUL9_9PHAE (DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL9_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 3.000e-110
Identity = 181/219 (82.65%), Postives = 195/219 (89.04%), Query Frame = 1 
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVW----ANSIYGFTGATV 645
            LQNG+DEDRRRLAVYCIKDA LPM+LMEKL+V+VNYIEMARVTGVPL+FLLSRGQQIKVFSMLLRK R+V LLIPN+P    HA  QETYEGATVIEPKKA Y+EPIATLDFASLYPSIMQAYNLCYSTLV   DKNKLKPDQY TSPSGDVFVKSEVTKGLLPAIL+ELL+ARKQAKRDMAAATDPMEKAVQNGRQLALK      A+ +YG T + +
Sbjct:  366 LQNGSDEDRRRLAVYCIKDALLPMKLMEKLSVMVNYIEMARVTGVPLNFLLSRGQQIKVFSMLLRKTRSVNLLIPNLPK---HAVDQETYEGATVIEPKKAFYEEPIATLDFASLYPSIMQAYNLCYSTLVAGEDKNKLKPDQYLTSPSGDVFVKSEVTKGLLPAILDELLTARKQAKRDMAAATDPMEKAVQNGRQLALKNGYDHDADVVYGDTDSVM 581
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BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A4D9CSP3_9STRA (DNA polymerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSP3_9STRA)

HSP 1 Score: 324 bits (830), Expect = 4.340e-100
Identity = 166/218 (76.15%), Postives = 188/218 (86.24%), Query Frame = 1 
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 654
            LQNGTDEDRRRLAVYCIKDA LP +LMEKL+V+VNY+EMARVTGVP++FLL+RGQQIKVFSMLLRKCR   LLIPN+P    +   + TYEGATVIEPKKA YQ+PIATLDFASLYPSIMQA+NLCYSTL+   +K  L P  Y T+PS + FVK  V KG+LP IL+ELL+ARK+AKRDMAAATDPMEKAVQNGRQLALK+ ANS+YGFTGATVGQL
Sbjct:  539 LQNGTDEDRRRLAVYCIKDALLPWKLMEKLSVLVNYVEMARVTGVPMAFLLTRGQQIKVFSMLLRKCRQSALLIPNLPK---NRQDEGTYEGATVIEPKKAFYQDPIATLDFASLYPSIMQAFNLCYSTLLSREEKQALPPSSYITTPSQESFVKPSVRKGILPLILDELLAARKRAKRDMAAATDPMEKAVQNGRQLALKISANSVYGFTGATVGQL 753
[Close]
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A812URB4_SYMMI (DNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812URB4_SYMMI)

HSP 1 Score: 308 bits (789), Expect = 1.920e-98
Identity = 160/218 (73.39%), Postives = 181/218 (83.03%), Query Frame = 1 
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 654
            LQ G+D DR RLAVYC+KDA LP QLM KL+++VNYIEMARVTGVPL+FLL+RGQQIKVFSMLLRK R V LLIPNI        + + YEGATVI+PKKA Y+ PI+TLDFASLYPSIMQ YNLCYSTL+   D  +L  D Y+ SPSG  FVKSE  KG+LP IL+ELL+ARKQAK+DMAAATDPMEKAVQNGRQLALK+ ANS+YGFTGATVGQL
Sbjct:   67 LQMGSDADRHRLAVYCLKDAHLPQQLMVKLSILVNYIEMARVTGVPLNFLLTRGQQIKVFSMLLRKTRKVNLLIPNIAKHGG-GGEDQGYEGATVIDPKKAYYETPISTLDFASLYPSIMQGYNLCYSTLLSADDAARLPVDAYQRSPSGHYFVKSETKKGILPQILDELLAARKQAKKDMAAATDPMEKAVQNGRQLALKISANSVYGFTGATVGQL 283
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BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A418FQZ5_9STRA (DNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FQZ5_9STRA)

HSP 1 Score: 299 bits (765), Expect = 5.250e-98
Identity = 156/218 (71.56%), Postives = 173/218 (79.36%), Query Frame = 1 
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 654
            LQ GT +DR RLAVYC+KDA LP+ L++KL+ +VNYIEMARVTGVPL FL+ RGQQIKV+SMLLRKCR   L++PN+P  A        YEGATVIEP KA Y  PIATLDFASLYPSIMQ YNLCYSTLV   D  KL  D Y+TSPSGDVFV+    KG+LP ILEELLSARKQAKRDMA A D M KAVQNGRQLALK+ ANS+YGFTGA VGQL
Sbjct:   67 LQRGTADDRHRLAVYCLKDAVLPLTLLQKLSYLVNYIEMARVTGVPLDFLIDRGQQIKVYSMLLRKCRGAGLVVPNLPR-AGGGGDDMGYEGATVIEPVKAYYTVPIATLDFASLYPSIMQGYNLCYSTLVAPSDIGKLPEDAYQTSPSGDVFVRDTTKKGILPLILEELLSARKQAKRDMATAPDAMSKAVQNGRQLALKISANSVYGFTGANVGQL 283
[Close]
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: K0SGP2_THAOC (DNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGP2_THAOC)

HSP 1 Score: 291 bits (745), Expect = 2.260e-95
Identity = 149/218 (68.35%), Postives = 176/218 (80.73%), Query Frame = 1 
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 654
            LQ G+D DR RLAVYC+KDA LP +LM+KL+V++NY+EMARVTGVP+SFL+SRGQQIKVFSM+LRKCR V LL+P +    S  A  E YEGATV++P K  YQ PIATLDFASLYPSIMQAYNLCYST+V  +D   + P +Y+ S +G  FV SEV KG+LP IL ELLSARK+AKRDM  A +  EKAVQNGRQLALK+ ANS+YGFTGA+VGQL
Sbjct:   39 LQAGSDADRHRLAVYCLKDANLPQRLMDKLSVLINYVEMARVTGVPVSFLISRGQQIKVFSMILRKCRDVNLLVPTLKK--SGPAGDEGYEGATVLDPIKQFYQVPIATLDFASLYPSIMQAYNLCYSTMVSGQDAKNVDPSKYKKSENGHAFVHSEVKKGILPTILGELLSARKRAKRDMKNAPNEFEKAVQNGRQLALKISANSVYGFTGASVGQL 254
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BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A3M6VP77_9STRA (DNA polymerase n=6 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VP77_9STRA)

HSP 1 Score: 307 bits (786), Expect = 2.080e-94
Identity = 156/218 (71.56%), Postives = 181/218 (83.03%), Query Frame = 1 
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 654
            LQ G+D+DR RLAVYC+KDA LP++L++KL+ +VNYIEMARV+GVP+ FL+ RGQQIKVFSMLLRKC+   L++P +P   S       YEGATVIEPKKA Y  PIATLDFASLYPSIMQAYNLCYSTLV   D +KL P  Y+ SPSGD+FV S++ KG+LP ILEE+L+ARKQAKRDM AATDPMEKAVQNGRQLALKV ANS+YGFTGA VGQL
Sbjct:  480 LQRGSDDDRHRLAVYCLKDAYLPLRLLDKLSYLVNYIEMARVSGVPIDFLIERGQQIKVFSMLLRKCKDASLVVPTLPR--SQINDDAGYEGATVIEPKKAFYSVPIATLDFASLYPSIMQAYNLCYSTLVAPGDADKLAPGAYQKSPSGDIFVTSKMKKGILPLILEEVLAARKQAKRDMNAATDPMEKAVQNGRQLALKVSANSVYGFTGAIVGQL 695
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BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A024USU1_9STRA (DNA polymerase n=16 Tax=Aphanomyces TaxID=100860 RepID=A0A024USU1_9STRA)

HSP 1 Score: 304 bits (778), Expect = 1.720e-93
Identity = 159/218 (72.94%), Postives = 176/218 (80.73%), Query Frame = 1 
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 654
            LQ GTD+DR RLAVYC+KDA LP+ L++KL+ +VNYIEMARVTGVPL FL+ RGQQIKV+SMLLRKCR   L++PN+P   +       YEGATVIEP KA Y  PIATLDFASLYPSIMQ YNLCYSTLV   D NKL  D Y+TSPSGDVFV+S   KG+LP ILEELLSARKQAKRDMA A D M KAVQNGRQLALKV ANS+YGFTGA VGQL
Sbjct:  440 LQRGTDDDRHRLAVYCLKDAVLPLTLLQKLSYLVNYIEMARVTGVPLDFLIDRGQQIKVYSMLLRKCRGAGLVVPNLPR--AGGGDDIGYEGATVIEPVKAYYTVPIATLDFASLYPSIMQGYNLCYSTLVAPSDINKLPVDAYQTSPSGDVFVRSATKKGILPLILEELLSARKQAKRDMATAPDAMSKAVQNGRQLALKVSANSVYGFTGANVGQL 655
[Close]
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A067CN59_SAPPC (DNA polymerase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CN59_SAPPC)

HSP 1 Score: 303 bits (777), Expect = 1.790e-93
Identity = 157/215 (73.02%), Postives = 173/215 (80.47%), Query Frame = 1 
Query:   10 GTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 654
            G+D+DR RLAVYC+KDA LP+ L++KL+ +VNY+EMARVTGVPL FL+ RGQQIKV+SMLLRKCR   L++PN+P   S A     YEGATVIEP KA Y  PIATLDFASLYPSIMQ YNLCYSTLV   D   L PD Y TSPSGDVFVKS   KG+LP ILEELLSARKQAKRDMA A D M KAVQNGRQLALKV ANS+YGFTGA VGQL
Sbjct:  422 GSDDDRHRLAVYCLKDAMLPLTLLQKLSYLVNYVEMARVTGVPLDFLIDRGQQIKVYSMLLRKCREASLVVPNLPR--SGAGDDAGYEGATVIEPMKAYYTMPIATLDFASLYPSIMQGYNLCYSTLVAPGDVGNLPPDAYETSPSGDVFVKSATKKGILPLILEELLSARKQAKRDMATAPDAMTKAVQNGRQLALKVSANSVYGFTGANVGQL 634
[Close]
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: F0X153_9STRA (DNA polymerase n=3 Tax=Albugo TaxID=65356 RepID=F0X153_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.920e-93
Identity = 154/218 (70.64%), Postives = 179/218 (82.11%), Query Frame = 1 
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 654
            LQ GTD+DR RLAVYC+KDA LP+QL+  L+++VNYIEMARV GVP+ +LL RGQQIKV+SMLLRKC+   LL+P +    +  +    YEGATVIEP KA Y  PIATLDFASLYPSIMQA+NLCYSTLV   D +KL P QY+TSPSGDVFVK++  KG+LP I+EELLSARKQAK DM+ ATDPMEKAVQNGRQLALK+ ANS+YGFTGA VGQL
Sbjct:  471 LQRGTDDDRHRLAVYCLKDASLPLQLLHNLSLLVNYIEMARVCGVPIDYLLERGQQIKVYSMLLRKCKGANLLVPTLQRSQNANSGDAGYEGATVIEPIKAYYTVPIATLDFASLYPSIMQAHNLCYSTLVAPNDVDKLNPLQYQTSPSGDVFVKADTRKGILPMIIEELLSARKQAKYDMSRATDPMEKAVQNGRQLALKISANSVYGFTGAVVGQL 688
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D3_ECTSI5.200e-11888.07DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KUL9_9PHAE3.000e-11082.65DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A4D9CSP3_9STRA4.340e-10076.15DNA polymerase n=3 Tax=Monodopsidaceae TaxID=42507... [more]
A0A812URB4_SYMMI1.920e-9873.39DNA polymerase n=1 Tax=Symbiodinium microadriaticu... [more]
A0A418FQZ5_9STRA5.250e-9871.56DNA polymerase n=1 Tax=Aphanomyces astaci TaxID=11... [more]
K0SGP2_THAOC2.260e-9568.35DNA polymerase n=1 Tax=Thalassiosira oceanica TaxI... [more]
A0A3M6VP77_9STRA2.080e-9471.56DNA polymerase n=6 Tax=Peronosporaceae TaxID=4777 ... [more]
A0A024USU1_9STRA1.720e-9372.94DNA polymerase n=16 Tax=Aphanomyces TaxID=100860 R... [more]
A0A067CN59_SAPPC1.790e-9373.02DNA polymerase n=3 Tax=Saprolegniaceae TaxID=4764 ... [more]
F0X153_9STRA1.920e-9370.64DNA polymerase n=3 Tax=Albugo TaxID=65356 RepID=F0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19231contigH-elongata_contig19231:5423..6909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.7
Seed ortholog evalue2.3e-100
Seed eggNOG ortholog2880.D7G6D3
KEGG rclassRC02795
KEGG koko:K02327
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
GOsGO:0000228,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0030894,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA replication proofreading
EggNOG OGsCOG0417@1,KOG0969@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size654
Cds size654
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19231.5321.1prot_H-elongata_contig19231.5321.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19231 5423..6909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930096.4517982-CDS-H-elongata_contig19231:5422..54731622930096.4517982-CDS-H-elongata_contig19231:5422..5473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 5423..5473 -
1691679278.7471268-CDS-H-elongata_contig19231:5422..54731691679278.7471268-CDS-H-elongata_contig19231:5422..5473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 5423..5473 -
1622930096.4699862-CDS-H-elongata_contig19231:5831..59631622930096.4699862-CDS-H-elongata_contig19231:5831..5963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 5832..5963 -
1691679278.7570746-CDS-H-elongata_contig19231:5831..59631691679278.7570746-CDS-H-elongata_contig19231:5831..5963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 5832..5963 -
1622930096.4829378-CDS-H-elongata_contig19231:6089..61971622930096.4829378-CDS-H-elongata_contig19231:6089..6197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 6090..6197 -
1691679278.7655125-CDS-H-elongata_contig19231:6089..61971691679278.7655125-CDS-H-elongata_contig19231:6089..6197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 6090..6197 -
1622930096.4930277-CDS-H-elongata_contig19231:6417..66061622930096.4930277-CDS-H-elongata_contig19231:6417..6606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 6418..6606 -
1691679278.7740211-CDS-H-elongata_contig19231:6417..66061691679278.7740211-CDS-H-elongata_contig19231:6417..6606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 6418..6606 -
1622930096.506772-CDS-H-elongata_contig19231:6735..69091622930096.506772-CDS-H-elongata_contig19231:6735..6909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 6736..6909 -
1691679278.784227-CDS-H-elongata_contig19231:6735..69091691679278.784227-CDS-H-elongata_contig19231:6735..6909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19231 6736..6909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19231.5321.1

>prot_H-elongata_contig19231.5321.1 ID=prot_H-elongata_contig19231.5321.1|Name=mRNA_H-elongata_contig19231.5321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFL
LSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKK
ALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSG
DVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLAL
KVWANSIYGFTGATVGQL
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mRNA from alignment at H-elongata_contig19231:5423..6909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19231.5321.1 ID=mRNA_H-elongata_contig19231.5321.1|Name=mRNA_H-elongata_contig19231.5321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1487bp|location=Sequence derived from alignment at H-elongata_contig19231:5423..6909- (Himanthalia elongata Himel1 dioecious)
TTACAGAATGGCACAGACGAAGATCGCAGGCGGCTTGCAGTCTACTGTAT
CAAAGACGCGCAGTTGCCGATGCAGCTGATGGAGAAACTTAATGTCATCG
TAAACTACATCGAAATGGCAAGGGTCACGGGCGTCCCTCTAAGCTTCCTA
CTTTCAAGAGGGCAGCAGATCAAGGTAGAAGACCTTTACATCATTGTAGT
TCATGTACCTTCTTTGTGCTATACCTATGAAGGATGGGCAGATTTGCGCT
TGAGGAGGCTTTCGTAAATCTTGCGCCATTTCCTTCCTTTGCCATTCCTT
CAGGTGTTTTCCATGCTTCTACGGAAGTGCAGGACCGTAAAGCTGCTGAT
CCCGAACATCCCGAACTTCGCGAGTCACGCAGCTAAGCAGGAGACGTACG
AAGGGGCGACGGTAATCGAACCGAAGAAGGCCTTATATCAAGAGCCGATC
GCGACGCTAGATTTCGCCTCTCTGTACCCTTCCATCATGCAGGTGAGCAT
GGATAAGTCGTATCTCGTGTACCTCATATGTTGCAAGTTATGTGTGCGAG
TGGTTGGGCATAGAATCCAGCACAAATCGGTTGCGGTTCTCGACAAAAAC
CAATATGGTATACGCCGTTAGACGCGCCTAGCAGGTTCTGCTAAGCCTGC
TCGCATATGGAGGCCTATCCAGCCCATAACAGCCACCTACACTAACGTCT
GTACTTTCTCAGGCCTACAATCTATGCTATTCGACGCTCGTCTGGAACAG
AGACAAGAACAAGCTCAAGCCTGATCAATACCGGACCAGCCCGTCTGGAG
ACGTGTTCGTAAAGTCGGAGGTAAGATACGTACAAGAAAGTAGACGAAGC
ACGGGTAGTGGGGCATCGCTGCGCAAATGTTCGAGCCCTGGTGAAAATCA
TGCTGTTACCTGTTCACTTTTTCACCTACGCTGATATATCTGCTAGGTGA
CGAAAGGGCTGCTCCCAGCGATTTTGGAAGAGCTTCTTAGTGCTCGAAAG
CAGGCTAAGAGAGACATGGCCGCCGCAACCGATCCCATGGAAAAGGCGGT
GCAAAACGGAAGGCAGCTCGCTCTCAAGGTGTGACGGAATTACGTATTTT
TGCTGGGGCACGGGAAGACCATTGTGTCATGTATCACCCCACGTGTCGAT
CCAAACGAATGAAGCAAATCGACTGTGCTGGATGTATTAGTAATGCTCCA
GGGCGTTTCCGTATTTCCGGCGAGCCCTGAGTGGTCGTTGCTTAAATTTC
ATCACATTAATAGGTTTGGGCGAACTCCGTCTATGTTTTCACGGGAGCTA
CGGTTGGACAACAACGCGTCGATCCAAATGAATCAAGCACATCGACTGTG
CCGGATGTATTAACAATACCCTAGGGCGTTGTCATATTTCCGGCGAGCGC
TGAGCACTCGTTACTTTAATTTAATCACATTAATAGGTTTGGGCGAACTC
CATCTATGGTTTCACGGGTGCTACGGTTGGACAACTG
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Coding sequence (CDS) from alignment at H-elongata_contig19231:5423..6909-

>mRNA_H-elongata_contig19231.5321.1 ID=mRNA_H-elongata_contig19231.5321.1|Name=mRNA_H-elongata_contig19231.5321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig19231:5423..6909- (Himanthalia elongata Himel1 dioecious)
TTACAGAATGGCACAGACGAAGATCGCAGGCGGCTTGCAGTCTACTGTAT
CAAAGACGCGCAGTTGCCGATGCAGCTGATGGAGAAACTTAATGTCATCG
TAAACTACATCGAAATGGCAAGGGTCACGGGCGTCCCTCTAAGCTTCCTA
CTTTCAAGAGGGCAGCAGATCAAGTTACAGAATGGCACAGACGAAGATCG
CAGGCGGCTTGCAGTCTACTGTATCAAAGACGCGCAGTTGCCGATGCAGC
TGATGGAGAAACTTAATGTCATCGTAAACTACATCGAAATGGCAAGGGTC
ACGGGCGTCCCTCTAAGCTTCCTACTTTCAAGAGGGCAGCAGATCAAGGT
GTTTTCCATGCTTCTACGGAAGTGCAGGACCGTAAAGCTGCTGATCCCGA
ACATCCCGAACTTCGCGAGTCACGCAGCTAAGCAGGAGACGTACGAAGGG
GCGACGGTAATCGAACCGAAGAAGGCCTTATATCAAGAGCCGATCGCGAC
GCTAGATTTCGCCTCTCTGTACCCTTCCATCATGCAGGTGTTTTCCATGC
TTCTACGGAAGTGCAGGACCGTAAAGCTGCTGATCCCGAACATCCCGAAC
TTCGCGAGTCACGCAGCTAAGCAGGAGACGTACGAAGGGGCGACGGTAAT
CGAACCGAAGAAGGCCTTATATCAAGAGCCGATCGCGACGCTAGATTTCG
CCTCTCTGTACCCTTCCATCATGCAGGCCTACAATCTATGCTATTCGACG
CTCGTCTGGAACAGAGACAAGAACAAGCTCAAGCCTGATCAATACCGGAC
CAGCCCGTCTGGAGACGTGTTCGTAAAGTCGGAGGCCTACAATCTATGCT
ATTCGACGCTCGTCTGGAACAGAGACAAGAACAAGCTCAAGCCTGATCAA
TACCGGACCAGCCCGTCTGGAGACGTGTTCGTAAAGTCGGAGGTGACGAA
AGGGCTGCTCCCAGCGATTTTGGAAGAGCTTCTTAGTGCTCGAAAGCAGG
CTAAGAGAGACATGGCCGCCGCAACCGATCCCATGGAAAAGGCGGTGCAA
AACGGAAGGCAGCTCGCTCTCAAGGTGACGAAAGGGCTGCTCCCAGCGAT
TTTGGAAGAGCTTCTTAGTGCTCGAAAGCAGGCTAAGAGAGACATGGCCG
CCGCAACCGATCCCATGGAAAAGGCGGTGCAAAACGGAAGGCAGCTCGCT
CTCAAGGTTTGGGCGAACTCCATCTATGGTTTCACGGGTGCTACGGTTGG
ACAACTGGTTTGGGCGAACTCCATCTATGGTTTCACGGGTGCTACGGTTG
GACAACTG
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