prot_H-elongata_contig192304.5320.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig192304.5320.1
Unique Name	prot_H-elongata_contig192304.5320.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	78

Homology

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BLAST of mRNA_H-elongata_contig192304.5320.1 vs. uniprot
Match: D7FN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN54_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 7.290e-29
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 0

Query:    9 AVKKVVGVQNATRKALEWLQHGDMTLQDLAQSLPKLSKARVEIVMEALRAAGLVTLVRKHAPDELVRNHI 78
            +VKKV GVQNATRKALEWLQ+GDM+L +L QSLPKLSKARVE+VMEALRAAGLVTLVRKHAP+ +  +H+
Sbjct:  105 SVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHV 174

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BLAST of mRNA_H-elongata_contig192304.5320.1 vs. uniprot
Match: A0A6H5KJM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.180e-27
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 0

Query:    9 AVKKVVGVQNATRKALEWLQHGDMTLQDLAQSLPKLSKARVEIVMEALRAAGLVTLVRKHAPDELVRNHI 78
            +VKKV GVQNATRKALEWLQ+GDM+L +L QSLPKLSKARVE+VMEALRAAGLVTLVRKHAP+ +  +H+
Sbjct:  104 SVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHV 173

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig192304.5320.1 vs. uniprot

BLAST of mRNA_H-elongata_contig192304.5320.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FN54_ECTSI	7.290e-29	78.57	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KJM1_9PHAE	1.180e-27	78.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 5..77 e-value: 8.6E-6 score: 27.3
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 11..66

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig192304	contig	H-elongata_contig192304:468..701 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig192304.5320.1	mRNA_H-elongata_contig192304.5320.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig192304 468..701 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig192304.5320.1 ID=prot_H-elongata_contig192304.5320.1|Name=mRNA_H-elongata_contig192304.5320.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
SGSTSSNHAVKKVVGVQNATRKALEWLQHGDMTLQDLAQSLPKLSKARVE
IVMEALRAAGLVTLVRKHAPDELVRNHI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036388	WH-like_DNA-bd_sf
IPR036390	WH_DNA-bd_sf