mRNA_H-elongata_contig19203.5317.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19203.5317.1
Unique NamemRNA_H-elongata_contig19203.5317.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: D7FK74_ECTSI (Similar to ubiquitin specific protease 34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK74_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 4.230e-109
Identity = 214/427 (50.12%), Postives = 268/427 (62.76%), Query Frame = 1 
Query:    4 VAEALPLDDAERVLRTTNVHLRAYLKEVSLEDLKRSPENRAALSGAMDHVSALVSSLG-HVPKEDKLAVLSTRYSLCQQFLQGPTLQVRLAGLMELGKAIGHVQLALTREHEHMQHL-LALQQTVCVCVCREDK----------------------------GFILSTWMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPALEVIVVFSALCLVNTLARRLPKREFDGRTLLLLKHLAASAVKLQMDRLADLGLSAMAEEEFLAPASTVAAAAAKGVVFREGGLGQEDVEDRDRRGSRNGLEVLWECVQDSPPEDERGVLSPDLHEEAFLYLSQVVGQLSGGLPCSVDPRVWLLDEVVTCLKERNSVVQALRALRALLDSFNQCDITV 1194
            VAE +    A ++L  T  ++RAY+  VS +DLKRSPENRAAL  AMD +S L+  +   +P   K AV+ TRY LC ++L+GPTLQVRL+GLMELGKAI ++  +    ++  Q + +A Q+ +        K                            G  L+ WM++D+ +E LFSA FLHTETLKRSG++PR+LAWL KLSN+H++LIW+AAR+SAHESIRHAVLQLLQGLFP L    V   L L+N+ AR+LPK EFD RTL+LL+HLA + +KL+ +R+ +LG    AE E  AP  T    A              +     R G  +G+EVLW+CVQD  P D RG L   LHEEAF  L   VGQL  GLPCSVDPRVWLLDEVV CLKER SVVQALR LRALL+SF    I V
Sbjct:  658 VAEVVSDATALKILNATLTNVRAYVAGVSSDDLKRSPENRAALFSAMDVISFLIDRIPTKLPIGYKRAVMKTRYGLCLEYLKGPTLQVRLSGLMELGKAIHNMHASHAHHYQQRQLIQMAHQKEIEDRAAARKKALSSPDNNADSDHSRERMANEFDDKHWVGHDLADWMINDELIELLFSAGFLHTETLKRSGDIPRYLAWLNKLSNDHLKLIWDAARESAHESIRHAVLQLLQGLFPHL----VKEQLGLINSFARQLPKCEFDVRTLVLLRHLATATMKLEKERVTELGTKKTAELEVTAPTDT----AXXXXXXXXXXXXXXEESGCARSGVMSGMEVLWDCVQDDAPGDVRGALPLALHEEAFSCLLNSVGQLGSGLPCSVDPRVWLLDEVVKCLKERKSVVQALRVLRALLESFRHFAIMV 1076
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: A0A6H5KFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW4_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 1.690e-100
Identity = 218/472 (46.19%), Postives = 267/472 (56.57%), Query Frame = 1 
Query:    4 VAEALPLDDAERVLRTTNVHLRAYLKEVSLEDLKRSPENRAALSGAMDHVSALVSSLG-HVPKEDKLAVLSTRYSLCQQFLQGPTLQVRLAGLMELGKAI-----GHVQLALTREHEHMQHLLALQQTVCVCV--------------CRE-------DKGFI---LSTWMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPALEVIVVFSALCLVNTLARRLPKREFDGRTLLLLKHLAASAVKLQMDRLADLGLSAMAEEEFLAPASTVAAAAAKGVVFREGGLGQEDVED-RDRRGSRNGLEVLWECVQDSPPEDER--------------------------------------------GVLSPDLHEEAFLYLSQVVGQLSGGLPCSVDPRVWLLDEVVTCLKERNSVVQALRALRALLDSFNQCDITV 1194
            VAE +    A ++L  T  ++RAY+  VS +DLKRSPENRAAL  AMD +S L+  +   +P   K AV+ TRY LC ++L+GPTLQVRL+GLMELGKAI      H      R+   M H   ++                      RE       DK ++   L+ WM++D+ +E LFSA FLHTETLKRSG++PR+LAWL KLSN+H++LIW+AAR+SAHESIRHAVLQLLQGLFP L    V   L L+N+ AR+LPK EFD RTL+LL+HLA + +KL+ +R+ +LG    AE E  AP  T                     E  R R G  +G+EVLW+CVQD  P D R                                            G L   LHEEAF  L   VGQL  GLPCSVDPRVWLLDEVV CLKER SVVQALR LRALL+SF    I V
Sbjct:  602 VAEVVSDATALKILNETLTNVRAYVAGVSSDDLKRSPENRAALFSAMDFISFLIDRIPTKLPIGYKRAVMKTRYGLCLEYLKGPTLQVRLSGLMELGKAIHNMHSSHAHHYQQRQLFQMAHQKEIEDRAAARTKALSSPGNNADSDYSRERMASEFDDKHWVGHDLADWMINDELIELLFSAGFLHTETLKRSGDIPRYLAWLNKLSNDHLKLIWDAARESAHESIRHAVLQLLQGLFPHL----VKEQLGLINSFARQLPKCEFDVRTLVLLRHLATATMKLEKERVTELGTKKAAELEVTAPTDTAXXXXXXXXXXXXXXXXXXXXESSRARSGVMSGMEVLWDCVQDDAPGDARHVASWSGGDGYGRFGGGGRVSELIARRQECEGFVVSLMRRAVVRGALPLALHEEAFSCLLNSVGQLGSGLPCSVDPRVWLLDEVVKCLKERKSVVQALRVLRALLESFRHFAIMV 1069
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: A0A7S1BN11_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BN11_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.860e-10
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:  418 WMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPAL---EVIVVFSALCLVNTLARRLPKREFDGRTLLLLKHLAASAVKL 762
            W+L    +E L S E+LH E LKR   +P F+     L++ H+  IW AA  S+HESI+HAV  LL  +   L   ++ V++  L       R LP  E D ++LLL+   A +A+ L
Sbjct:  466 WILDSQLLELLMSPEYLHPELLKRCARIPLFMVDQDALADSHLSAIWRAAVTSSHESIKHAVFNLLLEILDKLGNSQIRVLYQKL-------RNLPATEHDSQSLLLVNKFADAAMGL 576
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: A0A7S1BNC6_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNC6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.790e-10
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:  418 WMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPAL---EVIVVFSALCLVNTLARRLPKREFDGRTLLLLKHLAASAVKL 762
            W+L    +E L S E+LH E LKR   +P F+     L++ H+  IW AA  S+HESI+HAV  LL  +   L   ++ V++  L       R LP  E D ++LLL+   A +A+ L
Sbjct: 1110 WILDSQLLELLMSPEYLHPELLKRCARIPLFMVDQDALADSHLSAIWRAAVTSSHESIKHAVFNLLLEILDKLGNSQIRVLYQKL-------RNLPATEHDSQSLLLVNKFADAAMGL 1220
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: J9K4J1_ACYPI (USP domain-containing protein n=2 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9K4J1_ACYPI)

HSP 1 Score: 63.9 bits (154), Expect = 3.440e-7
Identity = 65/234 (27.78%), Postives = 98/234 (41.88%), Query Frame = 1 
Query:   52 TNVHLRAYLKEVSLEDLKRSPENRAALSGAMDHVSALVSSL--GHVPKEDKLAVLSTRYSLCQQFLQGPTLQVRLAGLMELGKAIG------HVQLALTREHEHMQHLLALQQTVCVCVCREDKGFILSTWMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPALEVIVVFSALCLVNTLARRLPKREFDGRTLLL 729
            TNVH+   L+   L  +    +       A      + SS   GH    DK  +      L  ++   PTL +RLAG+ ++   IG      HV  A          ++ ++Q           G  L+TW++H   +  +F    LH E +K+      FLA  GK++NEH++ IW AA Q  H S +  V  LL G    LE   V      +  L R+L  +E   ++L L
Sbjct:  226 TNVHVFVPLRSKVLRFMCNLSDKELRTPAAKTMADFMWSSNKDGHTSNLDKDGL-----ELAFKYFTSPTLTMRLAGISQINSHIGSLNELVHVTAATLSTSSQSNDMVTIEQI----------GHNLATWLVHRKIISHVFGPN-LHVEVIKQCSITLNFLASEGKITNEHIDTIWQAA-QLKHCSKQ--VFDLLPGFIKHLEPAPVLH----LYHLLRKLEPKEHTEQSLFL 436
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: A0A6G0ZGD8_APHCR (Ubiquitinyl hydrolase 1 n=20 Tax=Aphididae TaxID=27482 RepID=A0A6G0ZGD8_APHCR)

HSP 1 Score: 63.9 bits (154), Expect = 3.630e-7
Identity = 65/234 (27.78%), Postives = 98/234 (41.88%), Query Frame = 1 
Query:   52 TNVHLRAYLKEVSLEDLKRSPENRAALSGAMDHVSALVSSL--GHVPKEDKLAVLSTRYSLCQQFLQGPTLQVRLAGLMELGKAIG------HVQLALTREHEHMQHLLALQQTVCVCVCREDKGFILSTWMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPALEVIVVFSALCLVNTLARRLPKREFDGRTLLL 729
            TNVH+   L+   L  +    +       A      + SS   GH    DK  +      L  ++   PTL +RLAG+ ++   IG      HV  A          ++ ++Q           G  L+TW++H   +  +F    LH E +K+      FLA  GK++NEH++ IW AA Q  H S +  V  LL G    LE   V      +  L R+L  +E   ++L L
Sbjct:  226 TNVHVFVPLRSKVLRFMCNLSDKELRTPAAKTMADFMWSSNKDGHTSNLDKDGL-----ELAFKYFTSPTLTMRLAGISQINSHIGSLNELVHVTAATLSTSSQSNDMVTIEQI----------GHNLATWLVHRKIISHVFGPN-LHVEVIKQCSITLNFLASEGKITNEHIDTIWQAA-QLKHCSKQ--VFDLLPGFIKHLEPAPVLH----LYHLLRKLEPKEHTEQSLFL 436
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: A0A2S2QEN9_9HEMI (Ubiquitin carboxyl-terminal hydrolase 34 (Fragment) n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QEN9_9HEMI)

HSP 1 Score: 61.6 bits (148), Expect = 1.790e-6
Identity = 52/174 (29.89%), Postives = 79/174 (45.40%), Query Frame = 1 
Query:  226 LCQQFLQGPTLQVRLAGLMELGKAIG------HVQLALTREHEHMQHLLALQQTVCVCVCREDKGFILSTWMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPALEVIVVFSALCLVNTLARRLPKREFDGRTLLL 729
            L  ++   PTL +RLAG+ ++   IG      HV  A          ++ ++Q           G  L+TW++H   +  +F    LH E +K+      FLA  GK++NEH++ IW AA Q  H S +  V  LL G    LE   V      +  L R+L  +E   ++L L
Sbjct:  279 LAFKYFTSPTLTMRLAGISQINSHIGSLNELVHVTAATLSTSSQSNDMVTIEQI----------GHNLATWLVHRKIISHVFGPN-LHVEVIKQCSITLNFLASEGKITNEHIDTIWQAA-QLKHCSKQ--VFDLLPGFIKHLEPAPVLH----LYHLLRKLEPKEHTEQSLFL 434
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: UPI0008F9BE5E (ubiquitin carboxyl-terminal hydrolase 34 isoform X1 n=2 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BE5E)

HSP 1 Score: 59.7 bits (143), Expect = 7.970e-6
Identity = 44/165 (26.67%), Postives = 80/165 (48.48%), Query Frame = 1 
Query:  226 LCQQFLQGPTLQVRLAGLMELGKAIGHVQLALTREHEHMQHLLALQQTVCVC---VCREDKGFILSTWMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPALEVIVVFSALCLVNTLARRLPKREFD 711
            L  ++    TL +RLAG+ ++     H+ +     +  + +  + +Q+ C         D G  L+ W++ +D +  +F    LH E +K+S  +  FLA   KL+N+H+++IW AA+      ++H   Q+L  L P +  + V   L L N L +  PK   +
Sbjct:  304 LAFKYFTSSTLTMRLAGIAQINT---HINM-----YTELMNSSSCRQSTCGNNNNSSYNDIGHSLAVWLIENDIVSHIFGPN-LHVEVIKQSHIILNFLAMECKLTNDHIDIIWQAAQ------LKHCSKQVLDLLPPLINNMEVTPVLHLYNLLCQLSPKNHTE 453
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: UPI000E6E39B0 (ubiquitin carboxyl-terminal hydrolase puf n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E39B0)

HSP 1 Score: 57.4 bits (137), Expect = 4.240e-5
Identity = 53/198 (26.77%), Postives = 89/198 (44.95%), Query Frame = 1 
Query:   73 YLKEVSLEDLKRSPENRAALSGAMDHVSALVSSLGHVPKEDKLAVLSTRYSLCQQFLQGPTLQVRLAGLMELGKAIGHVQLALTREHEHMQHLLALQQTVCVCVCREDKGFILSTWMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPALEVIVVFSALC 666
            Y+  +S +DL RSP  R         ++  + S    P + +LA       L  ++    TL +RL G+ ++              H +M + +   +TV      E+ G  LS W+  ++ +E +F    LH E +K+S  +  FLA  GK+S +H++LIW AA+        H +L  L     A   + ++S LC
Sbjct:  231 YMCRLSDQDL-RSPTTRT--------MAEFMWSAVKDPLDARLAFDREGLELAFKYFTSSTLTMRLGGVAQINA------------HINMFNEICATETVAEA---ENVGRRLSDWLTENNIIECIFGPN-LHAEVVKQSHIILNFLAVEGKISEQHMDLIWQAAQSKHCSKPVHDLLPSLVKNLAAAPALHLYSLLC 403
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BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Match: A0A553P239_TIGCA (USP domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P239_TIGCA)

HSP 1 Score: 57.0 bits (136), Expect = 5.620e-5
Identity = 44/166 (26.51%), Postives = 80/166 (48.19%), Query Frame = 1 
Query:  226 LCQQFLQGPTLQVRLAGLMELGKAIGHVQLALTREHEHMQHLLALQQTVCVCVCREDKGFILSTWMLHDDTMERLFSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHAVLQLLQGLFPALEVIVVFSALCLVNTLARRLPKREFDGRTL 723
            L  ++   PTL +RL G+ ++   I      +  +  + + ++ +          E+ G  LS W+L +  +E +F    LH E +K+S  +  FLA  GK++NEH+ +IW AA+      ++H   Q+   L P ++ +     L L   L + LP +E   +T+
Sbjct:  344 LAMKYFNSPTLTMRLTGITQINSHI-----TVFNDMSNSESVVEV----------ENVGLQLSNWILVNKIVEHIFGPN-LHVEVIKQSHILLNFLAVEGKITNEHINVIWQAAQ------LKHCSKQVHDLLLPLIKNLEAGPVLHLYE-LMKDLPVKEHTEQTI 486
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19203.5317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FK74_ECTSI4.230e-10950.12Similar to ubiquitin specific protease 34 n=1 Tax=... [more]
A0A6H5KFW4_9PHAE1.690e-10046.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1BN11_9STRA8.860e-1037.29Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BNC6_9STRA9.790e-1037.29Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
J9K4J1_ACYPI3.440e-727.78USP domain-containing protein n=2 Tax=Acyrthosipho... [more]
A0A6G0ZGD8_APHCR3.630e-727.78Ubiquitinyl hydrolase 1 n=20 Tax=Aphididae TaxID=2... [more]
A0A2S2QEN9_9HEMI1.790e-629.89Ubiquitin carboxyl-terminal hydrolase 34 (Fragment... [more]
UPI0008F9BE5E7.970e-626.67ubiquitin carboxyl-terminal hydrolase 34 isoform X... [more]
UPI000E6E39B04.240e-526.77ubiquitin carboxyl-terminal hydrolase puf n=1 Tax=... [more]
A0A553P239_TIGCA5.620e-526.51USP domain-containing protein n=1 Tax=Tigriopus ca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19203contigH-elongata_contig19203:2647..6790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score63.2
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog192875.XP_004363911.1
Preferred nameUSP34
KEGG koko:K11840,ko:K11853
GOsGO:0001558,GO:0002682,GO:0002683,GO:0002697,GO:0002700,GO:0002759,GO:0002784,GO:0002831,GO:0002832,GO:0002920,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007444,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008592,GO:0009888,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010468,GO:0010646,GO:0010647,GO:0010648,GO:0016055,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030177,GO:0030307,GO:0031347,GO:0031348,GO:0031647,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0035220,GO:0035295,GO:0036211,GO:0036459,GO:0040008,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045751,GO:0045824,GO:0045927,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051716,GO:0060255,GO:0060429,GO:0060828,GO:0060968,GO:0065007,GO:0065008,GO:0070011,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0080134,GO:0090263,GO:0101005,GO:0140096,GO:0198738,GO:1900424,GO:1900425,GO:1901564,GO:1905114
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGs38D00@33154,COG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to ubiquitin specific protease 34
Ec32 orthologEc-17_003020.1
Exons9
Model size1194
Cds size1194
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930095.7645886-CDS-H-elongata_contig19203:2646..27031622930095.7645886-CDS-H-elongata_contig19203:2646..2703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 2647..2703 -
1691679278.4990833-CDS-H-elongata_contig19203:2646..27031691679278.4990833-CDS-H-elongata_contig19203:2646..2703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 2647..2703 -
1622930095.7800865-CDS-H-elongata_contig19203:2913..30701622930095.7800865-CDS-H-elongata_contig19203:2913..3070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 2914..3070 -
1691679278.5085704-CDS-H-elongata_contig19203:2913..30701691679278.5085704-CDS-H-elongata_contig19203:2913..3070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 2914..3070 -
1622930095.79247-CDS-H-elongata_contig19203:3449..37691622930095.79247-CDS-H-elongata_contig19203:3449..3769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 3450..3769 -
1691679278.5162408-CDS-H-elongata_contig19203:3449..37691691679278.5162408-CDS-H-elongata_contig19203:3449..3769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 3450..3769 -
1622930095.8092828-CDS-H-elongata_contig19203:3832..38571622930095.8092828-CDS-H-elongata_contig19203:3832..3857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 3833..3857 -
1691679278.524223-CDS-H-elongata_contig19203:3832..38571691679278.524223-CDS-H-elongata_contig19203:3832..3857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 3833..3857 -
1622930095.8218172-CDS-H-elongata_contig19203:4592..47391622930095.8218172-CDS-H-elongata_contig19203:4592..4739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 4593..4739 -
1691679278.532148-CDS-H-elongata_contig19203:4592..47391691679278.532148-CDS-H-elongata_contig19203:4592..4739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 4593..4739 -
1622930095.8347592-CDS-H-elongata_contig19203:5083..51631622930095.8347592-CDS-H-elongata_contig19203:5083..5163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 5084..5163 -
1691679278.5401037-CDS-H-elongata_contig19203:5083..51631691679278.5401037-CDS-H-elongata_contig19203:5083..5163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 5084..5163 -
1622930095.845435-CDS-H-elongata_contig19203:5619..57661622930095.845435-CDS-H-elongata_contig19203:5619..5766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 5620..5766 -
1691679278.5514061-CDS-H-elongata_contig19203:5619..57661691679278.5514061-CDS-H-elongata_contig19203:5619..5766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 5620..5766 -
1622930095.8591425-CDS-H-elongata_contig19203:6076..61821622930095.8591425-CDS-H-elongata_contig19203:6076..6182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 6077..6182 -
1691679278.5687532-CDS-H-elongata_contig19203:6076..61821691679278.5687532-CDS-H-elongata_contig19203:6076..6182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 6077..6182 -
1622930095.8723116-CDS-H-elongata_contig19203:6635..67901622930095.8723116-CDS-H-elongata_contig19203:6635..6790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 6636..6790 -
1691679278.5794706-CDS-H-elongata_contig19203:6635..67901691679278.5794706-CDS-H-elongata_contig19203:6635..6790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19203 6636..6790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19203.5317.1prot_H-elongata_contig19203.5317.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19203 2647..6790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19203.5317.1

>prot_H-elongata_contig19203.5317.1 ID=prot_H-elongata_contig19203.5317.1|Name=mRNA_H-elongata_contig19203.5317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=398bp
QVAEALPLDDAERVLRTTNVHLRAYLKEVSLEDLKRSPENRAALSGAMDH
VSALVSSLGHVPKEDKLAVLSTRYSLCQQFLQGPTLQVRLAGLMELGKAI
GHVQLALTREHEHMQHLLALQQTVCVCVCREDKGFILSTWMLHDDTMERL
FSAEFLHTETLKRSGEVPRFLAWLGKLSNEHVELIWNAARQSAHESIRHA
VLQLLQGLFPALEVIVVFSALCLVNTLARRLPKREFDGRTLLLLKHLAAS
AVKLQMDRLADLGLSAMAEEEFLAPASTVAAAAAKGVVFREGGLGQEDVE
DRDRRGSRNGLEVLWECVQDSPPEDERGVLSPDLHEEAFLYLSQVVGQLS
GGLPCSVDPRVWLLDEVVTCLKERNSVVQALRALRALLDSFNQCDITV
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mRNA from alignment at H-elongata_contig19203:2647..6790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19203.5317.1 ID=mRNA_H-elongata_contig19203.5317.1|Name=mRNA_H-elongata_contig19203.5317.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4144bp|location=Sequence derived from alignment at H-elongata_contig19203:2647..6790- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGGAGGCTCTGCCTCTGGACGATGCCGAAAGAGTTTTGCGGAC
GACAAACGTGCATCTTAGGGCGTATCTGAAGGAAGTCTCGCTGGAAGACC
TTAAGAGGTCCCCAGAGAACCGAGCGGCGCTGTCGGGCGCCATGGATCAT
GTTAGGTGCTGCAAATTAAGATGGCTCGTGGGTAGGGCTGGCTATTTTGA
CAAGCCTAACCGTACCATTAGCCGTAGCTGTCGGTGCTTGGTCCTGTGAC
GGGATACGGTAAAGTTGTCCGTGAGGTATTTTACAGCGAATAGTACGCTA
TGGGACATACCGTGTGGAATAGTATATGGTATATGATGGTGATATGTGGT
TTCGATATATATATATATATATATATAAGATATGTAAATATATCGTGTGG
AATGGTATGTGGTACGATGGTGAGAGCTATGATCTGCCGATAGCGCCCCA
TTGTTCGTCTTAACTCAAGTGGAGCAACAATAAATCCGTCAAAATTGTTG
TTCGAGCATCGGTGATCGCCACAAAAGAGACGAGCCATCTACCTCATACC
GCCTATGCCCATCCTCCCTTACTGTCCCCCGTCCACCGAACTAACTATTA
TCGTCTAGCGCGCTCGTGTCAAGCCTTGGCCACGTCCCGAAAGAGGACAA
ACTCGCGGTTCTTTCTACCAGATACTCTCTCTGTCAGCAGTTTCTTCAGG
GGCCTACCCTTCAGGTAAGCTCCCTTGTGACGGACCGCAGTGCCAATCCA
TGGTAAGCCGAGCTACTCCGCAGTATCGTGATAGTTCCAGTGTGCGTGTT
TGCTCGATGTGTTTTGGGCTTGGATGGGGTGGCATGCTTTCGTCGGCCGG
AGGCAGTAATGTACTGTACCGTGCCACGAGGAGGCTGCACAAGGCACTAA
TAAGCCCGTCGCGATTGCGCTCTTCTCTTGACGGAGGAACGCCTAATCGT
GACTTTTAGTAATCTCTGATCTCCCATGGGATGTGTGTGTGTCTGTGTGT
GTGCGTGGAATCATCGCATGACAGGTTCGATTAGCCGGCCTTATGGAGCT
GGGTAAGGCCATCGGACACGTGCAATTGGCTCTCACCCGAGAGCACGAAC
ATATGCAGCACCTACTCGCTCTCCAGCAAACGGTGTGTGTGTGTGTATGT
CGCGAGGATAAGGGATTCATTGTTTGATGGCGTTAACGAGTAAAGCCGGA
AAAGAAAATGGCAATGTAACGTCGGTCGGTCGGGGGGATTTTTTACCGAC
TTATTTACCAATTATTCTTTTATTATGTACTTGTTCATCGTAGGGAAGAG
GTTTCATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTT
TTGGTAACTTTTTTCTTTTTCATTTTTTTTTTCTCTTTTCTTTTTAGTTT
TGAAAAAATCAATNNNNNNNNNNAAATTTTTTTTTTTTTTTTTTAAATGA
TAAAAGAAGGGAAAAAGTTTTATTTTTTTTTTTTTTTTTTTTTTTATGGT
TGCGGTGTCTCGAGAGTCGGCAACTTCATTCTATGACATTTGTTGATTCT
CTATACTGATAAGTTGTGAAAAAATCAATTGAAAACATATAACTGGTCTT
GGCGTGTCTCCCCGTGTCATGTCACAGCTCTCGACGTGGATGTTACACGA
TGACACCATGGAGCGACTATTCAGCGCCGAATTCTTACATACCGAGACCC
TCAAACGGTGAGAGCCTCGGCTTCGCTCGCCCCGCCCATTGGACTTGAAA
ATCCGATCGCTTCCGCCCGCTCTCTTTGAATAGACCGCAGTACTCCCAAG
AGATCAGGCGCGTCCAGGAAAAAATCCACAAGCTCGTGTCTTGGGCGTCT
CTCTGCGTGAGATGCGCACAGACAAGTGTTCATTAAGAATTATTCAGCGT
TGTCCTTGCGTCAGCCGTTTCAAGCGTTTCTGCTGTAGCGAGTAAGGAGG
GGCTAGTGTCTCCTCGCACGCAGCATGTCACCGTGTGACGGAAATCGCTT
TTGGGCCACGTCCCGTCCCGCCCCCCCCCCTCTCGGGTTGCGTATCATAA
GGTCGGGTGAGGTACCGCGTTTCCTGGCGTGGCTGGGGAAGCTGTCGAAC
GAGCATGTTGAGCTTATTTGGAACGCCGCAAGGCAGTCGGCCCATGAGTC
CATCCGACACGCAGTCCTTCAGCTTCTGCAGGGGTTGTTCCCCGCCCTGT
CCAACGAACAGGCAAGATAAAAGAATTGCTTTTACTCTGTAGCTGAACTC
GTCTTGGGAGACTAAATTCTCAGGAGCGAACGGGGACAAGAAAAAATGTT
CTTTTCTGTTCATCTGACCACACAGCAGGAGACAACCAAATCCGTTTTTT
TCCCATACACTCTGCTTTGGGTAAATGACGTCATGGTCACACAGGACAGA
AGTTGCAGAAAAATATTGATTTTTGCTTGATAGGGTGGGTATTTACGGGG
TCACAAAAAAATTAATTCCAGTCGATTAAAATTTAAATCGGGCTCTGATT
GGACGAAGGCTAGGCGTTATTTAGCTTTCGACCAATCAGAGCCCGATTTA
AATTTAAATTGGCTAGAAATTAAAATTTTGGTAACCCCGTTAATACCAAC
CCTTAACGGGGACTGGATATTTAGAGGAGAGAAACGCGACGGTGGGGGGA
GGTGTCGAGGGAAGCTGCTTAAACGTCCCCAATTATTTTTAGGAGGGGAC
AAATTAAATTTGGCCCCTTCCGGGGAAACAATTCAATCATCCCCTTATAC
CTTATTCCACACAGGTTTTGTATACTGTACCTTATTATGAAGCGCGATCA
CCAGGGATGGCGACGATTGGATCTCGAGAAGAGGACGATTTTTTACCCTC
CTTTTCCAAAAACGGTGGCACTTGCGTAACGCCCCCTACCCCTCTCCATT
CCTATCTTTGAATGAGTCTCGTGTTCTCGTGAGGGAGGTCATCGTTGTGT
TTTCCGCAGTAAGCGCTCGACGGCACTCGTAATTGTTCCTCCTCCCGCTA
CTCCTGTCTCCTCGATTTCAGCTTTGCCTCGTGAACACCTTGGCTCGTCG
TCTTCCCAAGCGCGAGTTTGACGGCCGTACGCTCTTGCTACTGAAGCACC
TGGCCGCCTCCGCGGTAAAGCTCCAGATGGATAGGCTGGCGGACTTGGGA
CTTTCCGCTATGGCCGAGGAGGAGTTCCTTGCCCCAGCCTCCACCGTCGC
TGCTGCCGCAGCCAAAGGCGTTGTATTCAGGGAAGGTGGGCTCGGACAAG
AGGACGTGGAGGACAGGGATCGACGGGGTTCTCGTAATGGGCTGGAGGTG
CTCTGGGAATGTGTTCAGGATAGTCCCCCTGAAGACGAAAGGTAACATGA
TTCGGTCATGAGTAATGATCATTTGGAAGGAGGTTCTTGCTATTTTTTAT
TCGAGGTTCAGTTGCATTTTGTTTGCGGAATTGCTGTGCGTCGCGGGCGG
TGGGACTGGCGACGGTTGAGGGGAAAACTGTTATTTGGAGTCCTCGCGTT
CTTACGTGGCTAGTCTGTGTCCCAGCAAAGGCAGGCATCACTGCCGCGGC
CATGCAAGCGATATCGGAATCCACATTATTACATAAGTCAAACTAAGATA
GTAATAGTATTAGTAATAATTGTCTACATGTAAAGTCTCCGTGGAAAGGA
ACCCGTACAGAGGCTCGTCGATACCCTGACTGCTGCAAGCCTGTTCCATG
TTGTTCCGTCGGTACTGCAGAGGCGTGCTATCCCCGGATTTGCATGAAGA
GGCGTTTCTCTACCTATCACAAGTCGTGGGGCAACTGTCAGGTGGCCTGC
CGTGTTCCGTCGATCCAAGGGTGTGGCTCTTGGACGAGGTGGTCACCTGC
CTCAAGGAGCGCAATTCCGTTGTTCAGGTGGGTCGATCTTGGCAATGCTG
TTTGTACTGTTTATTATTGAGCTGGCGGCGATGACACGAAGTGGTCCGAA
AAAGCTGCTGCTCTAGCAAATGAGCAGTCGATGTGCAAGACAAAACACGA
TCATGCAGACCCGACCCCCCCCCCCCTTAGCTTTAATCAATACTCTGGCA
TCTCCCGCGTTAACGCCTGACGGTCGGTGGGGCGAAGGCGCTCCGAGCTC
TCCGCGCCCTGCTGGACTCATTCAACCAGTGCGACATCACCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig19203:2647..6790-

>mRNA_H-elongata_contig19203.5317.1 ID=mRNA_H-elongata_contig19203.5317.1|Name=mRNA_H-elongata_contig19203.5317.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2388bp|location=Sequence derived from alignment at H-elongata_contig19203:2647..6790- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGGAGGCTCTGCCTCTGGACGATGCCGAAAGAGTTTTGCGGAC
GACAAACGTGCATCTTAGGGCGTATCTGAAGGAAGTCTCGCTGGAAGACC
TTAAGAGGTCCCCAGAGAACCGAGCGGCGCTGTCGGGCGCCATGGATCAT
GTTAGCAGGTGGCGGAGGCTCTGCCTCTGGACGATGCCGAAAGAGTTTTG
CGGACGACAAACGTGCATCTTAGGGCGTATCTGAAGGAAGTCTCGCTGGA
AGACCTTAAGAGGTCCCCAGAGAACCGAGCGGCGCTGTCGGGCGCCATGG
ATCATGTTAGCGCGCTCGTGTCAAGCCTTGGCCACGTCCCGAAAGAGGAC
AAACTCGCGGTTCTTTCTACCAGATACTCTCTCTGTCAGCAGTTTCTTCA
GGGGCCTACCCTTCAGCGCGCTCGTGTCAAGCCTTGGCCACGTCCCGAAA
GAGGACAAACTCGCGGTTCTTTCTACCAGATACTCTCTCTGTCAGCAGTT
TCTTCAGGGGCCTACCCTTCAGGTTCGATTAGCCGGCCTTATGGAGCTGG
GTAAGGCCATCGGACACGTGCAATTGGCTCTCACCCGAGAGCACGAACAT
ATGCAGCACCTACTCGCTCTCCAGCAAACGGTGTGTGTGTGTGTATGTCG
CGAGGATAAGGGATTCATTGTTCGATTAGCCGGCCTTATGGAGCTGGGTA
AGGCCATCGGACACGTGCAATTGGCTCTCACCCGAGAGCACGAACATATG
CAGCACCTACTCGCTCTCCAGCAAACGGTGTGTGTGTGTGTATGTCGCGA
GGATAAGGGATTCATTCTCTCGACGTGGATGTTACACGATGACACCATGG
AGCGACTATTCAGCGCCGAATTCTTACATACCGAGACCCTCAAACGCTCT
CGACGTGGATGTTACACGATGACACCATGGAGCGACTATTCAGCGCCGAA
TTCTTACATACCGAGACCCTCAAACGGTCGGGTGAGGTACCGCGTTTCCT
GGCGTGGCTGGGGAAGCTGTCGAACGAGCATGTTGAGCTTATTTGGAACG
CCGCAAGGCAGTCGGCCCATGAGTCCATCCGACACGCAGTCCTTCAGCTT
CTGCAGGGGTTGTTCCCCGCCCTGTCGGGTGAGGTACCGCGTTTCCTGGC
GTGGCTGGGGAAGCTGTCGAACGAGCATGTTGAGCTTATTTGGAACGCCG
CAAGGCAGTCGGCCCATGAGTCCATCCGACACGCAGTCCTTCAGCTTCTG
CAGGGGTTGTTCCCCGCCCTGGAGGTCATCGTTGTGTTTTCCGCAGGAGG
TCATCGTTGTGTTTTCCGCACTTTGCCTCGTGAACACCTTGGCTCGTCGT
CTTCCCAAGCGCGAGTTTGACGGCCGTACGCTCTTGCTACTGAAGCACCT
GGCCGCCTCCGCGGTAAAGCTCCAGATGGATAGGCTGGCGGACTTGGGAC
TTTCCGCTATGGCCGAGGAGGAGTTCCTTGCCCCAGCCTCCACCGTCGCT
GCTGCCGCAGCCAAAGGCGTTGTATTCAGGGAAGGTGGGCTCGGACAAGA
GGACGTGGAGGACAGGGATCGACGGGGTTCTCGTAATGGGCTGGAGGTGC
TCTGGGAATGTGTTCAGGATAGTCCCCCTGAAGACGAAAGCTTTGCCTCG
TGAACACCTTGGCTCGTCGTCTTCCCAAGCGCGAGTTTGACGGCCGTACG
CTCTTGCTACTGAAGCACCTGGCCGCCTCCGCGGTAAAGCTCCAGATGGA
TAGGCTGGCGGACTTGGGACTTTCCGCTATGGCCGAGGAGGAGTTCCTTG
CCCCAGCCTCCACCGTCGCTGCTGCCGCAGCCAAAGGCGTTGTATTCAGG
GAAGGTGGGCTCGGACAAGAGGACGTGGAGGACAGGGATCGACGGGGTTC
TCGTAATGGGCTGGAGGTGCTCTGGGAATGTGTTCAGGATAGTCCCCCTG
AAGACGAAAGAGGCGTGCTATCCCCGGATTTGCATGAAGAGGCGTTTCTC
TACCTATCACAAGTCGTGGGGCAACTGTCAGGTGGCCTGCCGTGTTCCGT
CGATCCAAGGGTGTGGCTCTTGGACGAGGTGGTCACCTGCCTCAAGGAGC
GCAATTCCGTTGTTCAGAGGCGTGCTATCCCCGGATTTGCATGAAGAGGC
GTTTCTCTACCTATCACAAGTCGTGGGGCAACTGTCAGGTGGCCTGCCGT
GTTCCGTCGATCCAAGGGTGTGGCTCTTGGACGAGGTGGTCACCTGCCTC
AAGGAGCGCAATTCCGTTGTTCAGGCGCTCCGAGCTCTCCGCGCCCTGCT
GGACTCATTCAACCAGTGCGACATCACCGTGGCGCTCCGAGCTCTCCGCG
CCCTGCTGGACTCATTCAACCAGTGCGACATCACCGTG
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