mRNA_H-elongata_contig19195.5313.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19195.5313.1
Unique NamemRNA_H-elongata_contig19195.5313.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A6H5JH17_9PHAE (Clu domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH17_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 1.440e-115
Identity = 222/332 (66.87%), Postives = 248/332 (74.70%), Query Frame = 1
Query:  163 MQVRQLLGEVPQTCLYSAFRLVAVAPG------GVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAARPERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTASEASHSAA----DPVAEDMAQRVQRALDIRSRLKDSRVPV-GGEGLGCFYKVGLGLAVDEVAHPSKEEVAAASGKGGDKDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSFAKVRAW 1125
            MQVRQLLGE+PQTCLYSAFRLVA+ P       G    G  D VWK EG+VMND+VELRSI AVAARPE+V+VRMELE YT  TARQH+ KFRELL++PP C DGVGPG K G+G      XXXXXXXXXXXXXXX        + A+   A+V      E   +AA    DP AE  AQR+QRALDIR RLKDSRVPV G EGLG FY VGLGLAV+EVA PS EE      KGG KD+D PITCL+GVSVSAW+PPPPQRR+VGDLMYLEV ALDGT+I++TCTQGGFYVNGT R NFDP+P + NPCHSHELA CLLA + SFAK  AW
Sbjct:    1 MQVRQLLGEIPQTCLYSAFRLVALTPEPEGTEEGASSGGGGDAVWKREGDVMNDFVELRSIPAVAARPEKVEVRMELEPYTVSTARQHLQKFRELLKFPPPCQDGVGPGVKKGAGXX----XXXXXXXXXXXXXXXKAKESSANSGATAAKAVVAKAEGREGGAAAAVGEVDPAAEAAAQRIQRALDIRGRLKDSRVPVVGAEGLGAFYGVGLGLAVEEVASPSPEE-GGGKDKGG-KDRDGPITCLKGVSVSAWNPPPPQRRLVGDLMYLEVVALDGTVINITCTQGGFYVNGTSRGNFDPRPISGNPCHSHELAVCLLARNSSFAK--AW 324          
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A836CKQ1_9STRA (Clustered mitochondria-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.640e-40
Identity = 139/353 (39.38%), Postives = 180/353 (50.99%), Query Frame = 1
Query:   88 ITVHPPQKSGAAP-LVLEPLAGVEMVMQVRQLLGEVPQTCLYSAFRLVAVAPGGVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAAR-----------PERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTASEASHSAADPVAEDMAQRVQRALDIRSRLKDSRVPVGG-EGLGCFYKVGLGLAVDEVAHPSKEEVAAASGKGGDKDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
            + VHPP+   AA  ++L+ +   EM   VRQLL E P+ C  ++++L  +A G         TV     E +ND+VEL S+  VAA            P  ++++ME+E YT    R HV +F+ELL YPP   DG  PG    S K          XXXXXXXXXXXXXXXXXX                      A+  A           D  +RLKD+ +PVG  +GL  FY V L     +++H  K    A  G G          CL+ +   AW+PPP +RR++GDL+YLEV  LD   +HVT T  GFYVN TR   FDP PAA  P  SH+L TCL++ SPSF
Sbjct:   51 VLVHPPKGCSAAQAILLQGITPTEMAASVRQLLLEAPEVCYMTSYKLHLLAGG--------KTV-----EEINDFVELESLEPVAAALAAAVAQEDAPPPTIEMQMEMEDYTVKKVRDHVKRFKELLMYPPEAADGTVPGDAEASSKARKKLAKTSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEQA-----------DALARLKDASIPVGRPQGLAAFYDVALAT---DISHVPK---GAGLGAGS--------RCLKSLVFGAWNPPPARRRLLGDLVYLEVVTLDDATLHVTATPAGFYVNNTRHATFDPAPAAV-PHFSHDLLTCLISASPSF 364          
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A4D9CWV2_9STRA (Clu domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.810e-21
Identity = 101/332 (30.42%), Postives = 139/332 (41.87%), Query Frame = 1
Query:  127 LVLEPLAGVEMVMQVRQLLGEVPQTCLYSAFRLVAVAPGGVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAARPERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTAS-----EASHSAADPVAEDMAQRVQRALDIRSRLKDSRVPVGGEGLGCFYKVGLGLAVDEVAHPSKEEVAAASGKGGDKDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
            L L P+   E+ + V+Q+L E P+ C Y+++ LV      V+G+  +  +        ND+ EL     V     R+   M LE Y    AR HV + +ELL+YPP     + P A   +GK                            A A  GG  V +  A+           AD   E   Q+  RA+    RL     PV       F  V   LA      P+ E +  A              CL  +  S W+PPP  RR+ GDL+YLEV A+DG+++H+T    GFYVNGTR + FDP P       +H+L   L A  P F
Sbjct:   84 LTLPPVQASEVGLGVKQVLAEYPEACYYTSYALV------VKGSDPRVEI--------NDFTELNEYEGVFRGGARLV--MVLEDYDVRRARTHVRRLKELLQYPPV----LLPSAVKVTGKS---------------------------AGAGAGGTGVSSLGATLPIQARRKKEGADST-EAATQKELRAM--LERLPKVEFPVQISLDKLFPTVAGPLAT-----PAPEFLVPA--------------CLHNLGFSGWNPPPAHRRLQGDLLYLEVQAMDGSVLHLTAVPRGFYVNGTRGQVFDPSPDPAAAHFAHDLLPLLGAALPCF 346          
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A484EBN9_BRELC (Clu domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBN9_BRELC)

HSP 1 Score: 102 bits (253), Expect = 9.200e-20
Identity = 98/374 (26.20%), Postives = 154/374 (41.18%), Query Frame = 1
Query:   70 EDIAVCITVHPPQKSGAAPLVLEPLAGVEMVMQVRQLLGEVPQTCLYSAFRLVAVAPGGVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAARPERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTASEASHSAADPVAEDMAQRVQRALDIRSRLKDSRVPVGGEGLGCFYKVGLGLAV----DEVAHPSKEEVAAASGKGGDKDKDA-----------------------PITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTAL-DGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
            E++A+ I V PP   G A + LE L+  + V+ +RQL+ E P    Y+ + L A             ++  +  E +ND+VEL     V    + V +R+ L+ Y    AR HV +FR++L  PP   +     A  G   K                                      T  +S+ S      + E    +++R  +I   L+   +PV  E L  FY +   +AV     E    S +     SGK   +++                         P+ C++ ++ S ++PPP  R++VGDL+YLEV    D T+ H+T    GF+VN +   +FDP+P    P  SH L   L   SP+F
Sbjct:   26 EEVALSILVAPPITEGQA-VRLEGLSPSDTVLSLRQLIAEFPMLACYTCYHLEA------------KSLTSDSWEPLNDFVELSENENVV---DGVTLRIVLDKYDARNARAHVRRFRDVLSNPPIPQETFEREATPGVSDK--------------------------------------TEMSSDGSKMNEKNLDEISKHQLERLREIHYNLESIEIPVLPE-LVEFYSIPGAVAVTKERSEQIEKSNKNNEMKSGKKSKRNQQKVKQQQHIETNEQKKKEQQPEAKLPV-CIKSITYSGYNPPPGPRKLVGDLLYLEVNVNGDNTLYHITAHVDGFFVNSSTITHFDPRPNETTPSPSHLLVDLLSNVSPTF 343          
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: M4BM91_HYAAE (Clu domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BM91_HYAAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.510e-17
Identity = 94/375 (25.07%), Postives = 145/375 (38.67%), Query Frame = 1
Query:   70 EDIAVCITVHPPQKSGAAPLVLEPLAGVEMVMQVRQLLGEVPQTCLYSAFRLVAVAPGGVRGAGDQDTVWKEEGEVMNDYVELRSIAAVAARPERVQVRMELEAYTTHTARQHVHKFRELLRYPPACPDGVGPGAKLGSGKKGXXXXXXXXXXXXXXXXXXXXXXXXXXAPASPGGAMVETTTASEASHSAADPVAEDMAQRVQRALDIRSRLKDSRVPVGGEGLGCFYKV-GLGLAVDEVAHPSKEEVAAASGK----------------------GGDKDKDAPIT-----CLRGVSVSAWSPPPPQRRMVGDLMYLEVT-ALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
            E +   +   PP    +  + LE ++  + V+ +RQLL E P    Y+ + L A +          D  W+     +NDYVEL     V      V +RM L+ Y     R HV +FRE+L  PP  P  +                                      +P+   G+     TA+E        + E   Q+++R  +I  +L+   VPV  + L  FY   G   A  E A   +  V     K                      G  K ++  +      CL+ +  S ++PPP  R++VGDL+YLEV  A + T  H+T    GF+VN +    FDP+P   +  ++  L   L + S  F
Sbjct:   19 ESVFSVLVAPPPSAPSSGTVRLESVSPADTVVTLRQLLAEFPALACYTCYHLEAKSL--------TDDTWQP----LNDYVELGDYETVT---NGVTLRMVLDKYDARKVRAHVRRFREVLTNPPIPPLAI-----------------------------------ELESPSDAVGSKDNEPTATEGEEMQDKKLKEVSEQQLKRLREIHYKLEGIEVPVVPD-LADFYSFPGASPAAQEEAEQVESAVKGKDQKXXXXXXXXXXXXXXXXXXLIEAGERKQQEHSVNAKLPVCLKSIVFSGYNPPPGPRKLVGDLLYLEVVVAGENTPYHITAHVDGFFVNRSTAIEFDPRPDMTDAGYTQLLVDLLSSVSSKF 342          
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A1S8W761_9FUNG (Clu domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W761_9FUNG)

HSP 1 Score: 83.6 bits (205), Expect = 1.200e-13
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  856 PITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSF 1107
            P +CL+ +++S+W+PPP QRRM GDL+YL ++ L+G ++ VT +  GFY+NG+    FDP P    P   H L   L   SP F
Sbjct:  323 PESCLQSIALSSWNPPPLQRRMAGDLLYLSISILEGIVLEVTASVSGFYINGSSSTVFDPLPNKETPDLVHMLPLLLSQASPKF 406          
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A3Q2E3U2_CYPVA (Clustered mitochondria protein homolog n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2E3U2_CYPVA)

HSP 1 Score: 80.1 bits (196), Expect = 9.600e-13
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  841 KDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNP-CHSHELATCLLAYSPSFAK 1113
            +D   P+ CLR ++ S+W+PPP  R+M GDLMY+ V  L+   + +TC+  GFY+N +   NF+PKPAA    CHS  L   L   SP+F K
Sbjct:   58 RDDWKPLQCLRVLTTSSWNPPPGNRKMHGDLMYVSVLTLEDRELSITCSTRGFYLNQSTAFNFNPKPAAPKIICHS--LIELLKQLSPAFKK 147          
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A4P9W6Z1_9FUNG (Clustered mitochondria-domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W6Z1_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 1.010e-12
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  850 DAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCHSHELATCLLAYSPSFA 1110
            +A  TC R   +S W+PPP QRR+ GDLMYL VT L+    H+TC+  GF+ N +   +FDP P   + C  H L   L   SP FA
Sbjct:  267 EARETCFRQFGLSVWNPPPFQRRLAGDLMYLTVTTLEKDTYHITCSVSGFFANQSNGRDFDPTPRPKS-CLHHSLPGMLALLSPLFA 352          
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: A0A6P7Z200_9AMPH (Clustered mitochondria protein homolog n=3 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7Z200_9AMPH)

HSP 1 Score: 80.5 bits (197), Expect = 1.210e-12
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  856 PITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNPCH-SHELATCLLAYSPSFAK 1113
            P+ CL+ + +S W+PPP  R+M GDLMYL V  ++   IH+T +  GFY+N +  + F+PKPA  NP H  H L   L   SP+F K
Sbjct:  230 PLQCLKALMMSGWNPPPGNRKMHGDLMYLSVFTMEDHHIHITASNRGFYINQSTDDIFNPKPA--NPSHLCHSLVELLGLISPAFKK 314          
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Match: UPI000742B6BB (clustered mitochondria protein homolog n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=UPI000742B6BB)

HSP 1 Score: 80.1 bits (196), Expect = 1.380e-12
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  841 KDKDAPITCLRGVSVSAWSPPPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAANNP-CHSHELATCLLAYSPSFAK 1113
            +D   P+ CLR ++ S+W+PPP  R+M GDLMY+ V  L+   + +TC+  GFY+N +   NF+PKPAA    CHS  L   L   SP+F K
Sbjct:  328 RDDWKPLQCLRVLTTSSWNPPPGNRKMHGDLMYVSVLTLEDRELSITCSTRGFYLNQSTAFNFNPKPAAPKIICHS--LIELLKQLSPAFKK 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19195.5313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH17_9PHAE1.440e-11566.87Clu domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CKQ1_9STRA1.640e-4039.38Clustered mitochondria-domain-containing protein n... [more]
A0A4D9CWV2_9STRA8.810e-2130.42Clu domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A484EBN9_BRELC9.200e-2026.20Clu domain-containing protein n=1 Tax=Bremia lactu... [more]
M4BM91_HYAAE4.510e-1725.07Clu domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A1S8W761_9FUNG1.200e-1344.05Clu domain-containing protein n=1 Tax=Batrachochyt... [more]
A0A3Q2E3U2_CYPVA9.600e-1344.57Clustered mitochondria protein homolog n=1 Tax=Cyp... [more]
A0A4P9W6Z1_9FUNG1.010e-1244.83Clustered mitochondria-domain-containing protein n... [more]
A0A6P7Z200_9AMPH1.210e-1244.83Clustered mitochondria protein homolog n=3 Tax=Mic... [more]
UPI000742B6BB1.380e-1244.57clustered mitochondria protein homolog n=1 Tax=Cyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19195contigH-elongata_contig19195:103..2941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score410.2
Seed ortholog evalue1e-111
Seed eggNOG ortholog2880.D7G8X4
KEGG koko:K03255
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionClustered mitochondria protein, N-terminal
Ec32 orthologEc-15_004590.1
Exons5
Model size1125
Cds size1125
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19195.5313.1prot_H-elongata_contig19195.5313.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19195 103..2941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930095.378543-CDS-H-elongata_contig19195:102..2821622930095.378543-CDS-H-elongata_contig19195:102..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 103..282 -
1691679278.3320243-CDS-H-elongata_contig19195:102..2821691679278.3320243-CDS-H-elongata_contig19195:102..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 103..282 -
1622930095.3897598-CDS-H-elongata_contig19195:777..9841622930095.3897598-CDS-H-elongata_contig19195:777..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 778..984 -
1691679278.3496778-CDS-H-elongata_contig19195:777..9841691679278.3496778-CDS-H-elongata_contig19195:777..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 778..984 -
1622930095.4024909-CDS-H-elongata_contig19195:1364..15581622930095.4024909-CDS-H-elongata_contig19195:1364..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 1365..1558 -
1691679278.358782-CDS-H-elongata_contig19195:1364..15581691679278.358782-CDS-H-elongata_contig19195:1364..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 1365..1558 -
1622930095.4184399-CDS-H-elongata_contig19195:1722..19061622930095.4184399-CDS-H-elongata_contig19195:1722..1906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 1723..1906 -
1691679278.3670819-CDS-H-elongata_contig19195:1722..19061691679278.3670819-CDS-H-elongata_contig19195:1722..1906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 1723..1906 -
1622930095.4345548-CDS-H-elongata_contig19195:2581..29411622930095.4345548-CDS-H-elongata_contig19195:2581..2941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 2582..2941 -
1691679278.3747878-CDS-H-elongata_contig19195:2581..29411691679278.3747878-CDS-H-elongata_contig19195:2581..2941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19195 2582..2941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19195.5313.1

>prot_H-elongata_contig19195.5313.1 ID=prot_H-elongata_contig19195.5313.1|Name=mRNA_H-elongata_contig19195.5313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=375bp
DETSSEAIIKSDGSKSLGDGEEEEDIAVCITVHPPQKSGAAPLVLEPLAG
VEMVMQVRQLLGEVPQTCLYSAFRLVAVAPGGVRGAGDQDTVWKEEGEVM
NDYVELRSIAAVAARPERVQVRMELEAYTTHTARQHVHKFRELLRYPPAC
PDGVGPGAKLGSGKKGKGKGGGGGGGGKNRKSKETATAAGAKAPASPGGA
MVETTTASEASHSAADPVAEDMAQRVQRALDIRSRLKDSRVPVGGEGLGC
FYKVGLGLAVDEVAHPSKEEVAAASGKGGDKDKDAPITCLRGVSVSAWSP
PPPQRRMVGDLMYLEVTALDGTMIHVTCTQGGFYVNGTRRENFDPKPAAN
NPCHSHELATCLLAYSPSFAKVRAW
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mRNA from alignment at H-elongata_contig19195:103..2941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19195.5313.1 ID=mRNA_H-elongata_contig19195.5313.1|Name=mRNA_H-elongata_contig19195.5313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2839bp|location=Sequence derived from alignment at H-elongata_contig19195:103..2941- (Himanthalia elongata Himel1 dioecious)
GATGAAACGTCAAGCGAGGCTATTATCAAAAGCGACGGGAGCAAGAGCCT GGGGGATGGAGAGGAAGAAGAAGATATAGCGGTCTGCATCACGGTGCACC CTCCCCAGAAGTCGGGCGCAGCGCCCCTGGTGCTAGAGCCGCTGGCCGGG GTGGAGATGGTAATGCAGGTCCGACAGCTTCTCGGTGAGGTGCCGCAGAC TTGCCTGTACTCGGCGTTCCGGTTGGTGGCTGTGGCGCCCGGGGGAGTCC GGGGAGCAGGGGATCAGGATACTGTGTGGAAGGAGGAGGGCGAAGTGATG AACGATTACGTGGAGCTCCGGTCGATCGCTGCCGTAGCGGCTCGCCCGGA GAGGGTACAGGTGAGGGAAATATACATATTATATACATAAATACAGTGGA TGTATAGAGAGAAGAGTCATTAAAACGAAGTGCTGTGGTGTTGTGGGTCA TTATAATTACCTGAAGCCGTTTATTGTCATTGTATTATACCGTAGGAGTT GGTATTATTTTTCGGCTTGTTTTTCGGCTGTCTTTCTTTCCTCTGGCGCG CGCGCGTGTATCCGCGCGCCGGGTTTTGTTGAAGCTTGCGTTGCTTTTTT TTTCAGGGGCTTGATCACTCAAAAGCGTCAACGGCAAGCAGGAAGGGGGG GGGTGGATGGGGTGACGAAGTCTCCTCCGTCGGCGCGCATTGAACCTTTC GGTGTTTGATCTCTCTCAACACACACACTCACACAGACACAGACAAGAAG CGATCGACTGATCTCGGAGGGAAAGCAAAAAAACGCCTTCGAGTCCCGCG TCAGTTTCATGCTGCCGTTGTGCCCTGCAATCTTATTTTAATTCGATATC GCAGTTGTATATATTTACCTCCTCTCCCCTGTTGGATCGGATTGGGTCAT CACTAGCCAACACCGAGGCTTCCTCACGACCTTGCCGGTGACGCTTCAGG GGTATGCTATTCTCCCCTCCCCGATGGTCGGACACCTCCCGGGAACGCGC TAAACTTGACGCCCCTCCTATCCCATTTTCACCAGGTGCGCATGGAACTG GAGGCTTACACTACCCATACCGCCCGGCAGCACGTGCACAAGTTCAGGGA GCTGCTGCGGTACCCCCCTGCCTGCCCTGACGGTGTTGGCCCGGGCGCGA AGTTGGGGAGCGGAAAGAAGGGCAAGGGCAAGGGTGGCGGCGGAGGGGGC GGGGGCAAGAACAGGAAATGTGAGGCCTTCAAAGACACTATTTTTCTCTG TCATAGTCTCTCTCTATTTCTTCCTCTGTCATAGTCTCTATTTTTTTTTC ATTCTTCTCACGGATGTAGTATAAGAAAAACATTAACGATGCGCTGCTGC GCCCTGCCGGTGCATGTCCCACCCCGATATCAGCAAAGGAGACGGCGACC GCGGCAGGTGCTAAAGCCCCCGCATCCCCGGGGGGCGCCATGGTTGAGAC GACGACCGCTTCCGAAGCGTCCCATTCCGCCGCCGATCCGGTGGCCGAAG ATATGGCGCAACGCGTGCAGCGGGCGCTGGACATCCGCTCTCGGCTTAAG GACAGCCGAGTGCCCGTCGGTGGAGAGGTGGGGGCCGCGTAGGAGCGTCG CGGGGGATGAACATAACATGCCCCATACTGATAGGAACTCCTGCAACTGT AGCTGTTGAGCCCGTACGACGACAGACTCAATCAGCACACGCGTGATCGG CCGATGCGTAGAATAATGGCGTCATCGAAAAGAGAGGCCCCGAGGTTTCA ATGTTTAGGTGGCCAAGCGATGGGGGGCAGAGGAAGGGGACTAGGGAAGG CGCGCGCTTGTTCGTGTTCAAGCCTTGCGTGGTGATTATTTTGACGGGAG GAAGGGATCACAAGTTGTTTTTTTTATAGTGGGGGTCAACCTTTGTTTTG TTATCTGTGGCCTTCGCCGACAATACCGCCACGCGCCTCCCCACACGACA CACACAGGGTCTTGGGTGCTTCTACAAAGTGGGTCTGGGACTCGCCGTAG ACGAAGTGGCGCACCCCTCAAAAGAAGAAGTGGCGGCGGCCTCGGGGAAG GGAGGGGACAAAGACAAGGATGCCCCGATCACGTGCCTGCGAGGCGTTTC CGTGTCGGCGTGGAGCCCGCCCCCTCCGCAGAGGAGAATGGTTGGAGACC TTATGTATCTTGAGGTGCGCGTGGGTGTACTTTGGCTCTGTTTTATATTG AAGTTTTCAATGTTACAACAGATGAGGATTATTTTGTGCCCGCAGAACGC AAGCGCCCACACGGTTTTTGCTCCTGACGTTTCAGGGGACGGTGAGAGGG AAATTGTTGTTTTGTTTTGTTTTATTTTGTTTTTTGCTGTGGGTGAAACG AAAAATATTATTGAGCGACCTACCGACCTTTGGTGCGACGGCCGATCGCG GACAGCGGCTTTCTGCGGTCTTTTCGGATTTTGCGTTGTGCCGTAGAGTA GTAATGTACTTATTATATACATATATATATATGTATATATGTAGTTAGTG TGTGTTTATTAAACTACACATAACCACACATTCTTTGCTTCTCCATGTAA CCGTTTGTGTGTGTGTGTGTGTGTTTTGTACCCTTTCATCACAGACGCCG TTACCGTTTCACGTGGCTACCGTGCGCCGTTTTCGCGCGCCGTGTGGTCT GTCCTGCAGGTGACCGCGCTGGACGGGACGATGATCCACGTAACCTGCAC GCAGGGGGGCTTCTACGTAAACGGCACCCGTCGTGAAAACTTTGACCCCA AGCCAGCGGCCAATAACCCGTGCCACTCTCACGAGCTCGCCACGTGTCTG CTGGCATACAGCCCCAGCTTCGCGAAGGTGCGCGCTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig19195:103..2941-

>mRNA_H-elongata_contig19195.5313.1 ID=mRNA_H-elongata_contig19195.5313.1|Name=mRNA_H-elongata_contig19195.5313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2250bp|location=Sequence derived from alignment at H-elongata_contig19195:103..2941- (Himanthalia elongata Himel1 dioecious)
GATGAAACGTCAAGCGAGGCTATTATCAAAAGCGACGGGAGCAAGAGCCT
GGGGGATGGAGAGGAAGAAGAAGATATAGCGGTCTGCATCACGGTGCACC
CTCCCCAGAAGTCGGGCGCAGCGCCCCTGGTGCTAGAGCCGCTGGCCGGG
GTGGAGATGGTAATGCAGGTCCGACAGCTTCTCGGTGAGGTGCCGCAGAC
TTGCCTGTACTCGGCGTTCCGGTTGGTGGCTGTGGCGCCCGGGGGAGTCC
GGGGAGCAGGGGATCAGGATACTGTGTGGAAGGAGGAGGGCGAAGTGATG
AACGATTACGTGGAGCTCCGGTCGATCGCTGCCGTAGCGGCTCGCCCGGA
GAGGGTACAGGATGAAACGTCAAGCGAGGCTATTATCAAAAGCGACGGGA
GCAAGAGCCTGGGGGATGGAGAGGAAGAAGAAGATATAGCGGTCTGCATC
ACGGTGCACCCTCCCCAGAAGTCGGGCGCAGCGCCCCTGGTGCTAGAGCC
GCTGGCCGGGGTGGAGATGGTAATGCAGGTCCGACAGCTTCTCGGTGAGG
TGCCGCAGACTTGCCTGTACTCGGCGTTCCGGTTGGTGGCTGTGGCGCCC
GGGGGAGTCCGGGGAGCAGGGGATCAGGATACTGTGTGGAAGGAGGAGGG
CGAAGTGATGAACGATTACGTGGAGCTCCGGTCGATCGCTGCCGTAGCGG
CTCGCCCGGAGAGGGTACAGGTGCGCATGGAACTGGAGGCTTACACTACC
CATACCGCCCGGCAGCACGTGCACAAGTTCAGGGAGCTGCTGCGGTACCC
CCCTGCCTGCCCTGACGGTGTTGGCCCGGGCGCGAAGTTGGGGAGCGGAA
AGAAGGGCAAGGGCAAGGGTGGCGGCGGAGGGGGCGGGGGCAAGAACAGG
AAATGTGCGCATGGAACTGGAGGCTTACACTACCCATACCGCCCGGCAGC
ACGTGCACAAGTTCAGGGAGCTGCTGCGGTACCCCCCTGCCTGCCCTGAC
GGTGTTGGCCCGGGCGCGAAGTTGGGGAGCGGAAAGAAGGGCAAGGGCAA
GGGTGGCGGCGGAGGGGGCGGGGGCAAGAACAGGAAATCAAAGGAGACGG
CGACCGCGGCAGGTGCTAAAGCCCCCGCATCCCCGGGGGGCGCCATGGTT
GAGACGACGACCGCTTCCGAAGCGTCCCATTCCGCCGCCGATCCGGTGGC
CGAAGATATGGCGCAACGCGTGCAGCGGGCGCTGGACATCCGCTCTCGGC
TTAAGGACAGCCGAGTGCCCGTCGGTGGAGAGCAAAGGAGACGGCGACCG
CGGCAGGTGCTAAAGCCCCCGCATCCCCGGGGGGCGCCATGGTTGAGACG
ACGACCGCTTCCGAAGCGTCCCATTCCGCCGCCGATCCGGTGGCCGAAGA
TATGGCGCAACGCGTGCAGCGGGCGCTGGACATCCGCTCTCGGCTTAAGG
ACAGCCGAGTGCCCGTCGGTGGAGAGGGTCTTGGGTGCTTCTACAAAGTG
GGTCTGGGACTCGCCGTAGACGAAGTGGCGCACCCCTCAAAAGAAGAAGT
GGCGGCGGCCTCGGGGAAGGGAGGGGACAAAGACAAGGATGCCCCGATCA
CGTGCCTGCGAGGCGTTTCCGTGTCGGCGTGGAGCCCGCCCCCTCCGCAG
AGGAGAATGGTTGGAGACCTTATGTATCTTGAGGGTCTTGGGTGCTTCTA
CAAAGTGGGTCTGGGACTCGCCGTAGACGAAGTGGCGCACCCCTCAAAAG
AAGAAGTGGCGGCGGCCTCGGGGAAGGGAGGGGACAAAGACAAGGATGCC
CCGATCACGTGCCTGCGAGGCGTTTCCGTGTCGGCGTGGAGCCCGCCCCC
TCCGCAGAGGAGAATGGTTGGAGACCTTATGTATCTTGAGGTGACCGCGC
TGGACGGGACGATGATCCACGTAACCTGCACGCAGGGGGGCTTCTACGTA
AACGGCACCCGTCGTGAAAACTTTGACCCCAAGCCAGCGGCCAATAACCC
GTGCCACTCTCACGAGCTCGCCACGTGTCTGCTGGCATACAGCCCCAGCT
TCGCGAAGGTGCGCGCTTGGGTGACCGCGCTGGACGGGACGATGATCCAC
GTAACCTGCACGCAGGGGGGCTTCTACGTAAACGGCACCCGTCGTGAAAA
CTTTGACCCCAAGCCAGCGGCCAATAACCCGTGCCACTCTCACGAGCTCG
CCACGTGTCTGCTGGCATACAGCCCCAGCTTCGCGAAGGTGCGCGCTTGG
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