mRNA_H-elongata_contig19165.5302.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19165.5302.1
Unique NamemRNA_H-elongata_contig19165.5302.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 167 bits (422), Expect = 2.300e-49
Identity = 72/105 (68.57%), Postives = 92/105 (87.62%), Query Frame = 1
Query:    1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
            ++F GE+YNL QIH+HSPSEH +GGS  +AEIHWVH+KEGTED+LLVVGVLFD ++YG+N+E++ LWD L+IG+ +T E F TR+YD++PSNPVFSHY GSLTTP
Sbjct:  126 VEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTP 230          
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.230e-36
Identity = 56/83 (67.47%), Postives = 71/83 (85.54%), Query Frame = 1
Query:   67 VGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
            +GGS   AEIHWVH+K GT+D+LLV+GVLFD ++YG+N+E++ LWD L+IG  +TDE F TRVYD++PSNPVFSHY GSLTTP
Sbjct:    2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTP 84          
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.870e-34
Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
            L++ GE YNL Q H+HSPSEH +GG+  AAEIH VH+K+ T D LLVVG++F+ S+YG N+EL+P+W+ +++     +E F    Y LLP+ P F+ Y+GSLTTP
Sbjct:  131 LQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTP 235          
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 111 bits (277), Expect = 1.280e-27
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKE---GTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
            L F+G +Y+L Q+H+HSPSEH V GSL  AEIH VH ++   GTE ELLV+GV  DA E+G N+ L+PLWD L  G            Y+L+PS+  +SHY GSLTTP
Sbjct:  133 LSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSG---AKPRGVINPYELIPSDMAYSHYMGSLTTP 237          
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A5C8M2I5_9GAMM (Carbonic anhydrase n=2 Tax=Rheinheimera tangshanensis TaxID=400153 RepID=A0A5C8M2I5_9GAMM)

HSP 1 Score: 73.6 bits (179), Expect = 1.820e-13
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEI--GDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
            L F G+ YNL Q+H H+PSEH + G     E+H+VH     + +L +VGV     +  TN  LQ L   + +  G+  TD+     +  LLP    F HY GSLTTP
Sbjct:  119 LSFGGQDYNLKQLHFHTPSEHQLNGKSFPMEVHFVH--SDADGQLAIVGVFVQQGQ--TNATLQQLLQKVPLLKGETVTDQKAALDLNALLPKTKHFYHYMGSLTTP 221          
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A1V2YI43_9FIRM (Carbonic anhydrase n=1 Tax=Epulopiscium sp. Nuni2H_MBin001 TaxID=1884656 RepID=A0A1V2YI43_9FIRM)

HSP 1 Score: 67.8 bits (164), Expect = 9.830e-12
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   19 QYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
            ++ L Q+H HSPSEH + G     E H+VH  +     L VVGVLF   E   N+EL  +       D  ++  FE  + +L P +  + HYTGSLTTP
Sbjct:   53 EFELLQLHFHSPSEHTIDGEYFDFEAHFVH--QAQNGRLAVVGVLFKVGE--ENVELGEILSRFS-NDELSNSDFELNLLNLFPDDQSYYHYTGSLTTP 146          
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A8H9GFR8_9MICO (Carbonic anhydrase n=1 Tax=Promicromonospora citrea TaxID=43677 RepID=A0A8H9GFR8_9MICO)

HSP 1 Score: 67.0 bits (162), Expect = 4.750e-11
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
            +++ G +Y+L Q+H H+PSEH V G   AAE H VH  +  +   LVVGVL        N   QP    +E       E     V  +LP++P F  YTGSLTTP
Sbjct:  113 VEWEGTEYDLAQVHFHAPSEHTVDGEAMAAEFHLVHTTD--DGGTLVVGVLAQEGP-DENAAWQPF---VEGAAAPGTEDLVLDVEAMLPADPTFETYTGSLTTP 211          
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: UPI00101C3F5C (carbonic anhydrase family protein n=1 Tax=Promicromonospora panici TaxID=2219658 RepID=UPI00101C3F5C)

HSP 1 Score: 66.2 bits (160), Expect = 9.330e-11
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWD-ALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
            +++ G +++L Q+H H PSEH V G    AE H+VH  E    ++LV+GVL    +   N   QP  D A E G     +     V  +LP++P F  Y GSLTTP
Sbjct:  115 IEWKGNEFDLAQVHFHMPSEHTVEGKALDAEFHFVHTTES--GKVLVLGVLAQEGD-AENEAWQPFVDGAAEPG----SDELPIDVAAMLPTDPTFEEYAGSLTTP 213          
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-10
Identity = 44/129 (34.11%), Postives = 60/129 (46.51%), Query Frame = 1
Query:    1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDA-SEYGTNLELQPLWD-----------ALEIGDHSTDESF------------ETRVYDLLPSNPVFSHYTGSLTTP 315
            +  NG  +NL Q H+HS SEH +GG    AEIH+VH        L VVGV+  + S+   NLE    W+           A EI + ST                +   Y +LP++  + +Y GSLTTP
Sbjct:   72 ITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTP 200          
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A2T6L7C1_9MICO (Carbonic anhydrase n=1 Tax=Promicromonospora sp. AC04 TaxID=2135723 RepID=A0A2T6L7C1_9MICO)

HSP 1 Score: 65.5 bits (158), Expect = 1.800e-10
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWD-ALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
            +++   +++L Q+H H PSEH V G    AE H+VH  E  + ++LV+GVL    +   N + QP  D A E G     +     V  +LP++P F  Y GSLTTP
Sbjct:  115 VEWKDNEFDLAQVHFHLPSEHTVEGKALDAEFHFVHTTE--DGQVLVLGVLAQTGD-AENEDWQPFIDGAAEPG----SDELPIDVAAMLPTDPTFEEYAGSLTTP 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6MHT6_SACJA2.300e-4968.57Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
Q9SMD6_9PHAE1.230e-3667.47Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
D8LB10_ECTSI1.870e-3452.38Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A872YNN4_SACJA1.280e-2752.78Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
A0A5C8M2I5_9GAMM1.820e-1339.25Carbonic anhydrase n=2 Tax=Rheinheimera tangshanen... [more]
A0A1V2YI43_9FIRM9.830e-1239.39Carbonic anhydrase n=1 Tax=Epulopiscium sp. Nuni2H... [more]
A0A8H9GFR8_9MICO4.750e-1140.00Carbonic anhydrase n=1 Tax=Promicromonospora citre... [more]
UPI00101C3F5C9.330e-1138.68carbonic anhydrase family protein n=1 Tax=Promicro... [more]
H6WB77_VAULI1.700e-1034.11Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A2T6L7C1_9MICO1.800e-1037.74Carbonic anhydrase n=1 Tax=Promicromonospora sp. A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19165contigH-elongata_contig19165:3163..4960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue7.5e-28
Seed eggNOG ortholog2880.D8LB10
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
EC2.7.11.1,4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size316
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19165.5302.1prot_H-elongata_contig19165.5302.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19165 3163..4960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930094.1267886-CDS-H-elongata_contig19165:3162..32281622930094.1267886-CDS-H-elongata_contig19165:3162..3228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19165 3163..3228 +
1691679277.9218678-CDS-H-elongata_contig19165:3162..32281691679277.9218678-CDS-H-elongata_contig19165:3162..3228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19165 3163..3228 +
1622930094.1429396-CDS-H-elongata_contig19165:4397..45171622930094.1429396-CDS-H-elongata_contig19165:4397..4517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19165 4398..4517 +
1691679277.9337752-CDS-H-elongata_contig19165:4397..45171691679277.9337752-CDS-H-elongata_contig19165:4397..4517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19165 4398..4517 +
1622930094.1590703-CDS-H-elongata_contig19165:4831..49601622930094.1590703-CDS-H-elongata_contig19165:4831..4960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19165 4832..4960 +
1691679277.9426365-CDS-H-elongata_contig19165:4831..49601691679277.9426365-CDS-H-elongata_contig19165:4831..4960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19165 4832..4960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19165.5302.1

>prot_H-elongata_contig19165.5302.1 ID=prot_H-elongata_contig19165.5302.1|Name=mRNA_H-elongata_contig19165.5302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGV
LFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTG
SLTTP
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mRNA from alignment at H-elongata_contig19165:3163..4960+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19165.5302.1 ID=mRNA_H-elongata_contig19165.5302.1|Name=mRNA_H-elongata_contig19165.5302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1798bp|location=Sequence derived from alignment at H-elongata_contig19165:3163..4960+ (Himanthalia elongata Himel1 dioecious)
CTAAAGTTCAACGGCGAGCAATACAACTTGCACCAGATACACGTCCACTC CCCGTCTGAGCACGCGGTAAGAAGAAGACACAAAACAATAATAAGCGTGG GACTATTTACTTTGCGCGCAGACAGACTCACGAACGGGACACGACATAGG CATTACGCTGCATCAGGTTGAGAGTGCGTGTGGTATTCTGAATGGTCCGT TGTCTTCTGGAGGCTAAATATACCCAAAACACACGCCATTACTATTAATA GTCTGTCCGTACACTCCCCTTTCCTTTATGTGCCTAGAACAAGTTTTGGT ATCAAAACACGTACCAGATACACATTAGTGGTACATAATCTGATACTCCA CTGTATCGCACATGCCCACTTTTCCAGCAGTAGGTGCGGGAAAAGAGAGA CACACACAAGAATTGGTCCATGGGGTTACTTGAATAAACTGCATCCGTTA CTCAAGCTACCTTAAGAACGTCTGTCTCAGTGCCGGCGAACTCACGGCGA TGAACGTCATCGCTACGCAATTACGTGACCTGATAAAGTCGGTATTGGCC CGATGGCGATTGAAGGTAGAGATAGACCGTCGCGGAAAGCAAGAGGATCG AGAGGATCCCGGGAGTACGAACCAGATTCAGCCTGGGTTAGGAGAATGGG CGGGCTAATGGGGACGGGACGGGCGAAGACGTCTCGCGAAACCAAATCCT CAGACCCGAACGGGGACAGGGAAAATTATCCCCCCCCCTTCAGCTGACCA ATAGCAGGATTGGCAACCATATCCGGTTAATCCATACTATAATGCTATAT GTGATGACCATTCGAAGCACGTATAAAGTGTAAGTGGGATTTGACCGAGG GATCCTTAGCAAGTACGGTACGGTATGCTGAAGAGCCGCCACATCGCTAA TTCTAATTTTGGCCCACTAGCTCTATGATCGTGAGGAACTCCGCGACTCC ATTTAGAGCTTTTCCGGTCCTTCTTTGAACCACCCACTTCGATCTCTGAT GGTTGTATTCTAGCAAACTTTCTCCCTCGTAAGTACTCGTACACGTAATC GCAGGCCAGCAATTGTTTTTTATTTCCAAAACACCAGTGCAAAATACAGA CCTATAAACACACGTGGGTACCCCAAAATTCTAAGCACGTCAGAGAAGCA AACAAATTTGGTATCCCGCCGTCCTCTTCACCCGCGATGGTGGCTCCACA TTGCTCTCTCTCCCCGCGATTCTTTCTGACGACAGGTTGGGGGATCCCTG CGCGCGGCAGAGATCCACTGGGTGCACATCAAGGAAGGAACGGAGGATGA ACTTCTTGTGGTTGGCGTACTCTTCGATGCTAGTGAATACGGTACCAACC TTGAGGTCCGTGTGGTAGAGATACGTAGTTACGTCGCCATCTTCTTCCTC TTTCCTTCCTTCTTATAAGCTTCTACTGGCGTTAGAAAGTACCTGGTAGT TATTTATTGTTTGAGCGCCTGGGCGTTTTGCGGCGTACGATTAAAGCTCT GACGACTGGATAACGATTTGTTCTGAGATGGATTTTACCGCGTCCAGACA GCCACGAGTTCCGTATTCCCTTAGAGATAAGCACCGAGGAACTTTTGTTT GCTCACGTCCTTCGACATTCTCCCCTCTTTTCGATCCTCGTGTCCTGTCG AGCGCGTTCGTCACCACAGCTCCAGCCCCTGTGGGACGCTCTGGAAATTG GTGACCACTCCACGGACGAATCATTCGAGACACGTGTGTATGACCTGCTG CCTTCAAACCCAGTATTTTCCCACTACACTGGATCTTTAACAACGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig19165:3163..4960+

>mRNA_H-elongata_contig19165.5302.1 ID=mRNA_H-elongata_contig19165.5302.1|Name=mRNA_H-elongata_contig19165.5302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig19165:3163..4960+ (Himanthalia elongata Himel1 dioecious)
CTAAAGTTCAACGGCGAGCAATACAACTTGCACCAGATACACGTCCACTC
CCCGTCTGAGCACGCGCTAAAGTTCAACGGCGAGCAATACAACTTGCACC
AGATACACGTCCACTCCCCGTCTGAGCACGCGGTTGGGGGATCCCTGCGC
GCGGCAGAGATCCACTGGGTGCACATCAAGGAAGGAACGGAGGATGAACT
TCTTGTGGTTGGCGTACTCTTCGATGCTAGTGAATACGGTACCAACCTTG
AGGTTGGGGGATCCCTGCGCGCGGCAGAGATCCACTGGGTGCACATCAAG
GAAGGAACGGAGGATGAACTTCTTGTGGTTGGCGTACTCTTCGATGCTAG
TGAATACGGTACCAACCTTGAGCTCCAGCCCCTGTGGGACGCTCTGGAAA
TTGGTGACCACTCCACGGACGAATCATTCGAGACACGTGTGTATGACCTG
CTGCCTTCAAACCCAGTATTTTCCCACTACACTGGATCTTTAACAACGCC
CCTCCAGCCCCTGTGGGACGCTCTGGAAATTGGTGACCACTCCACGGACG
AATCATTCGAGACACGTGTGTATGACCTGCTGCCTTCAAACCCAGTATTT
TCCCACTACACTGGATCTTTAACAACGCCC
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