mRNA_H-elongata_contig19165.5302.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA) HSP 1 Score: 167 bits (422), Expect = 2.300e-49 Identity = 72/105 (68.57%), Postives = 92/105 (87.62%), Query Frame = 1
Query: 1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
++F GE+YNL QIH+HSPSEH +GGS +AEIHWVH+KEGTED+LLVVGVLFD ++YG+N+E++ LWD L+IG+ +T E F TR+YD++PSNPVFSHY GSLTTP
Sbjct: 126 VEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTP 230
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.230e-36 Identity = 56/83 (67.47%), Postives = 71/83 (85.54%), Query Frame = 1
Query: 67 VGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
+GGS AEIHWVH+K GT+D+LLV+GVLFD ++YG+N+E++ LWD L+IG +TDE F TRVYD++PSNPVFSHY GSLTTP
Sbjct: 2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTP 84
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI) HSP 1 Score: 129 bits (323), Expect = 1.870e-34 Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 1
Query: 1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
L++ GE YNL Q H+HSPSEH +GG+ AAEIH VH+K+ T D LLVVG++F+ S+YG N+EL+P+W+ +++ +E F Y LLP+ P F+ Y+GSLTTP
Sbjct: 131 LQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTP 235
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA) HSP 1 Score: 111 bits (277), Expect = 1.280e-27 Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = 1
Query: 1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKE---GTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
L F+G +Y+L Q+H+HSPSEH V GSL AEIH VH ++ GTE ELLV+GV DA E+G N+ L+PLWD L G Y+L+PS+ +SHY GSLTTP
Sbjct: 133 LSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSG---AKPRGVINPYELIPSDMAYSHYMGSLTTP 237
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A5C8M2I5_9GAMM (Carbonic anhydrase n=2 Tax=Rheinheimera tangshanensis TaxID=400153 RepID=A0A5C8M2I5_9GAMM) HSP 1 Score: 73.6 bits (179), Expect = 1.820e-13 Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 1
Query: 1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEI--GDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
L F G+ YNL Q+H H+PSEH + G E+H+VH + +L +VGV + TN LQ L + + G+ TD+ + LLP F HY GSLTTP
Sbjct: 119 LSFGGQDYNLKQLHFHTPSEHQLNGKSFPMEVHFVH--SDADGQLAIVGVFVQQGQ--TNATLQQLLQKVPLLKGETVTDQKAALDLNALLPKTKHFYHYMGSLTTP 221
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A1V2YI43_9FIRM (Carbonic anhydrase n=1 Tax=Epulopiscium sp. Nuni2H_MBin001 TaxID=1884656 RepID=A0A1V2YI43_9FIRM) HSP 1 Score: 67.8 bits (164), Expect = 9.830e-12 Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 19 QYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
++ L Q+H HSPSEH + G E H+VH + L VVGVLF E N+EL + D ++ FE + +L P + + HYTGSLTTP
Sbjct: 53 EFELLQLHFHSPSEHTIDGEYFDFEAHFVH--QAQNGRLAVVGVLFKVGE--ENVELGEILSRFS-NDELSNSDFELNLLNLFPDDQSYYHYTGSLTTP 146
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A8H9GFR8_9MICO (Carbonic anhydrase n=1 Tax=Promicromonospora citrea TaxID=43677 RepID=A0A8H9GFR8_9MICO) HSP 1 Score: 67.0 bits (162), Expect = 4.750e-11 Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1
Query: 1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWDALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
+++ G +Y+L Q+H H+PSEH V G AAE H VH + + LVVGVL N QP +E E V +LP++P F YTGSLTTP
Sbjct: 113 VEWEGTEYDLAQVHFHAPSEHTVDGEAMAAEFHLVHTTD--DGGTLVVGVLAQEGP-DENAAWQPF---VEGAAAPGTEDLVLDVEAMLPADPTFETYTGSLTTP 211
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: UPI00101C3F5C (carbonic anhydrase family protein n=1 Tax=Promicromonospora panici TaxID=2219658 RepID=UPI00101C3F5C) HSP 1 Score: 66.2 bits (160), Expect = 9.330e-11 Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 1
Query: 1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWD-ALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
+++ G +++L Q+H H PSEH V G AE H+VH E ++LV+GVL + N QP D A E G + V +LP++P F Y GSLTTP
Sbjct: 115 IEWKGNEFDLAQVHFHMPSEHTVEGKALDAEFHFVHTTES--GKVLVLGVLAQEGD-AENEAWQPFVDGAAEPG----SDELPIDVAAMLPTDPTFEEYAGSLTTP 213
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI) HSP 1 Score: 65.5 bits (158), Expect = 1.700e-10 Identity = 44/129 (34.11%), Postives = 60/129 (46.51%), Query Frame = 1
Query: 1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDA-SEYGTNLELQPLWD-----------ALEIGDHSTDESF------------ETRVYDLLPSNPVFSHYTGSLTTP 315
+ NG +NL Q H+HS SEH +GG AEIH+VH L VVGV+ + S+ NLE W+ A EI + ST + Y +LP++ + +Y GSLTTP
Sbjct: 72 ITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTP 200
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Match: A0A2T6L7C1_9MICO (Carbonic anhydrase n=1 Tax=Promicromonospora sp. AC04 TaxID=2135723 RepID=A0A2T6L7C1_9MICO) HSP 1 Score: 65.5 bits (158), Expect = 1.800e-10 Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 1 LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVLFDASEYGTNLELQPLWD-ALEIGDHSTDESFETRVYDLLPSNPVFSHYTGSLTTP 315
+++ +++L Q+H H PSEH V G AE H+VH E + ++LV+GVL + N + QP D A E G + V +LP++P F Y GSLTTP
Sbjct: 115 VEWKDNEFDLAQVHFHLPSEHTVEGKALDAEFHFVHTTE--DGQVLVLGVLAQTGD-AENEDWQPFIDGAAEPG----SDELPIDVAAMLPTDPTFEEYAGSLTTP 213 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19165.5302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19165.5302.1 >prot_H-elongata_contig19165.5302.1 ID=prot_H-elongata_contig19165.5302.1|Name=mRNA_H-elongata_contig19165.5302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp LKFNGEQYNLHQIHVHSPSEHAVGGSLRAAEIHWVHIKEGTEDELLVVGVback to top mRNA from alignment at H-elongata_contig19165:3163..4960+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19165.5302.1 ID=mRNA_H-elongata_contig19165.5302.1|Name=mRNA_H-elongata_contig19165.5302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1798bp|location=Sequence derived from alignment at H-elongata_contig19165:3163..4960+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19165:3163..4960+ >mRNA_H-elongata_contig19165.5302.1 ID=mRNA_H-elongata_contig19165.5302.1|Name=mRNA_H-elongata_contig19165.5302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig19165:3163..4960+ (Himanthalia elongata Himel1 dioecious)back to top |