mRNA_H-elongata_contig19157.5300.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19157.5300.1
Unique NamemRNA_H-elongata_contig19157.5300.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE)

HSP 1 Score: 429 bits (1102), Expect = 1.790e-128
Identity = 319/663 (48.11%), Postives = 381/663 (57.47%), Query Frame = 2 
Query: 2042 SFGRRESSIAQVRFDTDAELDLAIRSSPSPLRVVAQNSCPQGMMAGTPHHPSPHTPSXXXXXXXXXXSHLGPPRHAPPAAFDPNIPSTPGYAMASNVGSVLG---DEDMIVVGMP-RGARRGLDASGNDGEGNEMD--TTRAIDAHAAFEVETAAARDPEESMLYQKASIHLSKKFKVHLTPTQLWRVLALFQIQGRQLVAFGLAPHSALNINTDPSSTGEGSDVY--ESTTGERCGMKRNKSYMAQSAVVNPVHDLLALNGVPMPEDEVQPLLEALRVRPRQLVKRGLLPQEILAEMPDGH-----GGPRGGPHGRHMHSHREHFGHEGAGRGRGGRGPHP---------------FRPPHMHPHRAHXXXXXXXXXHGIEESYPVPPHLGVGGPHVPPXXMAXXXXXXXXPSHMQDGAHGGAGWWPHGHPGDMRGPHGHGPHPH--------------LW-HGPPGXHSYGGGFGGPPGMXXXXXXXXPWAGHHXXGGGGY------------GGPRKGFGKGNKDNMAMARFVAHSSGSDTTTVASGNTFKKSWLVRNDSTTAWPETCYLVPVSQSCQDLSSPPEAPVVGDVAPGEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVGSGEDVNAAVEKLSLDD-GHKD 3862
            +F  +++   +VRFDT+AELDLAIR+S  PLR++  N  P           +P+  +                     +A  P+IPSTPGYA+ASNVGS +G   + DMI+V MP   A      SG   +G++ D     AI+  AAFE E AAARDPE S+LYQKAS+ L+K+FKVHLTPTQLWRV+ALFQIQGRQLV FGLAPH +L+     +S  + SD    E+      G+KR+KS +A + V + V  LL LNGV +PEDEVQPLL+ALRVR R+LV+ GLL  E L +MPDGH      GPRGGP G  MH H    G   AGRG       P               + PP  H       XXXXX   G     P              XX  XXXXXXXX                                                +W HGPPG + + GGF G PG   XXXXXX      XX                 G  ++GFGKG KDNMAMARFV+H+SGSD T VA+G  FKKSWLVRNDSTT WPETC L+PVSQSC DLSSPPEAP+VGDV+PGEE TVSVDL+AP QPGMYEGYWR CDD+ R+FGQRLWAK MVVG GE+VNAAVE+LSL++ G+KD
Sbjct:   46 TFTYKDNDGDEVRFDTNAELDLAIRTSSVPLRIMVANP-PXXXXXXXXSRSTPNPEAT--------------------SAAPPSIPSTPGYAVASNVGSAVGGGDEPDMIMVDMPGEAAAAAAGPSGGSVDGSQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKASMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDAAAAAASDLDSSDEEGGENKPSAVRGLKRSKSQVAGTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDAKGPRGGPPGHPMHGHGHGPGGRFAGRGXXXXXXXPPFGXXXXXXLMMPFHWPPPFHHQXXXXSGXXXXXVAEGATHRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMWQHGPPG-YDFAGGFPGAPGAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAKRGFGKGTKDNMAMARFVSHTSGSDVTKVAAGQAFKKSWLVRNDSTTTWPETCSLIPVSQSCTDLSSPPEAPIVGDVSPGEEVTVSVDLVAPPQPGMYEGYWRACDDASRKFGQRLWAKVMVVGPGEEVNAAVERLSLEENGNKD 686
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: D8LFK8_ECTSI (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK8_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 9.980e-71
Identity = 117/148 (79.05%), Postives = 132/148 (89.19%), Query Frame = 2 
Query: 3422 GGPRKGFGKGNKDNMAMARFVAHSSGSDTTTVASGNTFKKSWLVRNDSTTAWPETCYLVPVSQSCQDLSSPPEAPVVGDVAPGEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVGSGEDVNAAVEKLSLDD-GHKD 3862
            G  ++GFGKG KDNMAMARFV+H+SGSD T VA+G  FKKSWLVRNDSTT WPETC L+PVSQSC DLSSPPEAP+VGDV+PGEEATVSVDL+AP QPGMYEGYWR CDD+ RRFGQRLWAK MVVG GE+VNAAVE+LSL++ G+KD
Sbjct:   66 GAAKRGFGKGTKDNMAMARFVSHTSGSDVTKVAAGQAFKKSWLVRNDSTTTWPETCSLIPVSQSCTDLSSPPEAPIVGDVSPGEEATVSVDLVAPPQPGMYEGYWRACDDASRRFGQRLWAKVMVVGPGEEVNAAVERLSLEENGNKD 213
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: D8LFK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK7_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 7.780e-69
Identity = 166/340 (48.82%), Postives = 206/340 (60.59%), Query Frame = 2 
Query: 2042 SFGRRESSIAQVRFDTDAELDLAIRSSPSPLRVVAQNSCPQGMMAGTPHHPSPHTPSXXXXXXXXXXSHLGPPRHAPPAAFDPNIPSTPGYAMASNVGSVLG---DEDMIVVGMPRGARRGLDA--SGNDGEGNEMD--TTRAIDAHAAFEVETAAARDPEESMLYQKASIHLSKKFKVHLTPTQLWRVLALFQIQGRQLVAFGLAPHSALNINTDPSSTGEGSDVYESTT--GERC-----GMKRNKSYMAQSAVVNPVHDLLALNGVPMPEDEVQPLLEALRVRPRQLVKRGLLPQEILAEMPDGH-----GGPRGGPHGRHMHSHREHFGHEGAGRG 3004
            +F  +++   +VRFDT+AELDLA+R+S  PLR++  N                 TP+                     +A  P+IPSTPGYA+ASNVGSV+G   D DMI+V MP  A     A  SG   +G++ D     AI+  AAFE E AAARDPE S+LYQK+S+ L+K+FKVHLTPTQLWRV+ALFQIQGRQLV FGLAPH +L    D S++   SDV  S    GE       G+KR+KS +A++ V + V  LL LNGV +P DEVQPLL+ALRVR R+LV+ GLL  E L +MPDGH      GPRGGP G  MH H    G    GRG
Sbjct:   15 TFTYKDNEGDEVRFDTNAELDLALRTSSVPLRIMVANPXXXXXXXXXXXXXXRSTPNPEAT-----------------SAAPPSIPSTPGYAVASNVGSVVGGGDDADMIMVDMPGEAAAAAAAGPSGGSVDGSQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKSSMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSL----DASASAAASDVDSSDEEGGENKPSAVRGLKRSKSQVARTIVADHVQRLLILNGVELPGDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKGPRGGPPGHPMHGHXXXPGGRFGGRG 333
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: A0A7S0MRM9_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MRM9_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 5.860e-14
Identity = 51/133 (38.35%), Postives = 73/133 (54.89%), Query Frame = 2 
Query: 3470 MARFVAHSSGSDTTTVASGNTFKKSWLVRNDSTTAWPE-TCYLVPVSQSCQDLSSPPEA-PVVGDVAPGEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVGSGEDVNAAVEKLSLDDGHKD 3862
            MARFV H +  +   + +G    K+W VRNDS  AWP+    LV VS    D  +P +A PV   +APGEE  +SV++ AP+ PG+Y+G+WR+      +FGQRL    +V    +D  A +     D   +D
Sbjct:  146 MARFVDHVTLQEGEKIPAGERCTKTWRVRNDSPRAWPDGPIELVYVSGKASDRLTPQDAYPVEAKLAPGEETELSVEITAPTAPGLYQGFWRLRGPKGCKFGQRLGCSVLV----KDDEAVISDSDHDSSEED 274
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: W2PAG6_PHYPN (UBA domain-containing protein (Fragment) n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PAG6_PHYPN)

HSP 1 Score: 84.0 bits (206), Expect = 6.230e-14
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 2 
Query: 3431 RKGFGKGNKDNMAMARFVAHSSGSDTTTVASGNTFKKSWLVRNDSTTAWPETCYLV--PVSQSCQD--LSSPPEAPVVGDVAPGEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVGSGEDVNAAVEKLSLDDGHKDK 3865
            R G G+  +D+   ARF+   +  D T V++    +K W + ND   +WP+ CY++  P +    D   SS  + P +   APGEE    VDL+AP++PG Y  +WRVCD +   FG R W   +V G G          S  D  +D+
Sbjct:    9 RHGRGRCGRDSDLEARFLEDVTIEDGTVVSAAQPLRKMWKLVNDGERSWPDGCYMITQPGNPMFPDDRKSSRIDLPAL---APGEEFIAGVDLVAPTEPGRYASFWRVCDPADVSFGHRFWIDIVVAG-GATSEPTPSDASTADSAEDE 153
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: D0MQN9_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MQN9_PHYIT)

HSP 1 Score: 88.2 bits (217), Expect = 1.070e-13
Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 2 
Query: 3503 DTTTVASGNTFKKSWLVRNDSTTAWPETCYLV--PVSQSCQDL-SSPPEAPVVGDVAPGEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVGSGEDVNAAVEKLSLDDGHKD 3862
            D T V +G   +K W + ND   AWP+ CY++  P +    D  SS  E P +   APG+E    VDL+APSQPG Y  +WRVCD +   FG R W   +VVG+    +   E  + D G  +
Sbjct:  584 DGTVVEAGKPLRKMWKLVNDGERAWPDGCYMITQPGNPMFPDRESSRIELPAL---APGQEYIAGVDLVAPSQPGRYPNFWRVCDPADASFGHRFWIDIVVVGNSIAESTPSEAPTADSGEDE 703
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: A0A1V9ZB25_9STRA (UBA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB25_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.130e-13
Identity = 48/118 (40.68%), Postives = 67/118 (56.78%), Query Frame = 2 
Query: 3458 DNMAMARFVAHSSGSDTTTVASGNTFKKSWLVRNDSTTAWPETCYLVPVSQSCQDLSSPPEAPVVGDVAPGEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVGSGE 3811
            D+   A FV   S  D +TV +G+TF K+W ++ND  T WP T  LV V     +  S  E   +  + PG+   VSV++ APS+P  Y G+WR+     +RFGQR W   +VVGSG+
Sbjct:  340 DSKPSAAFVGDVSFPDGSTVRAGDTFVKTWRLKNDGKTRWPSTTELVWVGGVHLETKS--ERLPIPILPPGKMIDVSVEMQAPSKPARYTGFWRLSSADGKRFGQRFWVDILVVGSGK 455
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: A0A024TN25_9STRA (UBA domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TN25_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.800e-13
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 2 
Query: 3458 DNMAMARFVAHSSGSDTTTVASGNTFKKSWLVRNDSTTAWPETCYLVPVSQSCQDLS-SPPEAPVVGDVAPGEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVG 3802
            DN   A FV   S  D +T+ +G++F K+W ++ND  T WP    LV V     ++  S    P+V    PG+   VSV++ APS+P  Y GYWR+C    +R+GQRLW   +VVG
Sbjct:  350 DNKPSAAFVGDVSFPDGSTIRAGDSFLKTWRLKNDGKTRWPAKSRLVCVGGDHLEIGDSFVSVPIV---PPGKMIDVSVEMKAPSKPARYTGYWRLCTADGKRYGQRLWVDILVVG 462
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: A0A485LEZ8_9STRA (Aste57867_20135 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEZ8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.010e-13
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 2 
Query: 3458 DNMAMARFVAHSSGSDTTTVASGNTFKKSWLVRNDSTTAWPETCYLVPVSQSCQDLSSPPEAPVVGDVAPGEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVGSGEDV 3817
            D+   A FV   S  D +T+ +G+TF K+W ++ND  T WP    LV V     ++    ++  V  + PG+   VSVD+ AP +P  Y GYWR+C    +R+G RLW   +VVG  E V
Sbjct:  344 DSKPSASFVGDVSFPDGSTIRAGDTFVKTWRLKNDGKTRWPAKSRLVCVGGDHLEVGE--DSVSVPILLPGKMIDVSVDMQAPIKPARYTGYWRLCTADGKRYGHRLWVDILVVGKPEVV 461
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BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Match: A0A6G0WW99_9STRA (UBA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW99_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.160e-12
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 2 
Query: 3458 DNMAMARFVAHSSGSDTTTVASGNTFKKSWLVRNDSTTAWPETCYLVPVS----QSCQDLSSPPEAPVVGDVAPGEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVGSGEDVNA 3823
            DN   A FV   S  D +T+ +G+TF K+W ++ND  T WP    LV V     +  +D  S P  P      PG+   VSV++ AP++   Y GYWR+C    +R+G RLW   +VVG  E V +
Sbjct:  343 DNKPSAGFVGDVSFPDGSTIRAGDTFVKTWRLKNDGKTRWPAKSRLVCVGGDHLEVGEDFVSVPIVP------PGKMIDVSVEMRAPNKAARYTGYWRLCTADGKRYGHRLWVDILVVGKPEVVKS 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19157.5300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTZ0_9PHAE1.790e-12848.11PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFK8_ECTSI9.980e-7179.05N_BRCA1_IG domain-containing protein n=1 Tax=Ectoc... [more]
D8LFK7_ECTSI7.780e-6948.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0MRM9_9CHLO5.860e-1438.35Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
W2PAG6_PHYPN6.230e-1434.23UBA domain-containing protein (Fragment) n=1 Tax=P... [more]
D0MQN9_PHYIT1.070e-1339.02Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A1V9ZB25_9STRA1.130e-1340.68UBA domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A024TN25_9STRA2.800e-1340.52UBA domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A485LEZ8_9STRA5.010e-1338.33Aste57867_20135 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WW99_9STRA1.160e-1238.10UBA domain-containing protein n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19157contigH-elongata_contig19157:194..5653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.1
Seed ortholog evalue3.9e-62
Seed eggNOG ortholog2880.D8LFK8
KEGG koko:K17987
KEGG Pathwayko04137,map04137
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005829,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016043,GO:0016236,GO:0022607,GO:0031410,GO:0031982,GO:0032182,GO:0034622,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0051258,GO:0051259,GO:0061919,GO:0065003,GO:0071840,GO:0097708
EggNOG free text desc.ubiquitin binding
EggNOG OGsKOG4351@1,KOG4351@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001850.1
Exons2
Model size5419
Cds size1701
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19157.5300.1prot_H-elongata_contig19157.5300.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19157 1745..3445 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.9648771-UTR-H-elongata_contig19157:193..17441622930093.9648771-UTR-H-elongata_contig19157:193..1744Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19157 194..1744 -
1691679277.8696663-UTR-H-elongata_contig19157:193..17441691679277.8696663-UTR-H-elongata_contig19157:193..1744Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19157 194..1744 -
1622930093.9983225-UTR-H-elongata_contig19157:3445..37251622930093.9983225-UTR-H-elongata_contig19157:3445..3725Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19157 3446..3725 -
1691679277.8897736-UTR-H-elongata_contig19157:3445..37251691679277.8897736-UTR-H-elongata_contig19157:3445..3725Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19157 3446..3725 -
1622930094.0138996-UTR-H-elongata_contig19157:3766..56531622930094.0138996-UTR-H-elongata_contig19157:3766..5653Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19157 3767..5653 -
1691679277.8991537-UTR-H-elongata_contig19157:3766..56531691679277.8991537-UTR-H-elongata_contig19157:3766..5653Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19157 3767..5653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.9829643-CDS-H-elongata_contig19157:1744..34451622930093.9829643-CDS-H-elongata_contig19157:1744..3445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19157 1745..3445 -
1691679277.880058-CDS-H-elongata_contig19157:1744..34451691679277.880058-CDS-H-elongata_contig19157:1744..3445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19157 1745..3445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19157.5300.1

>prot_H-elongata_contig19157.5300.1 ID=prot_H-elongata_contig19157.5300.1|Name=mRNA_H-elongata_contig19157.5300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=567bp
MMAGTPHHPSPHTPSHEPVQRPHQRSHLGPPRHAPPAAFDPNIPSTPGYA
MASNVGSVLGDEDMIVVGMPRGARRGLDASGNDGEGNEMDTTRAIDAHAA
FEVETAAARDPEESMLYQKASIHLSKKFKVHLTPTQLWRVLALFQIQGRQ
LVAFGLAPHSALNINTDPSSTGEGSDVYESTTGERCGMKRNKSYMAQSAV
VNPVHDLLALNGVPMPEDEVQPLLEALRVRPRQLVKRGLLPQEILAEMPD
GHGGPRGGPHGRHMHSHREHFGHEGAGRGRGGRGPHPFRPPHMHPHRAHG
RGPHPHGPHGIEESYPVPPHLGVGGPHVPPPHMAAAHSPPPPPSHMQDGA
HGGAGWWPHGHPGDMRGPHGHGPHPHLWHGPPGPHSYGGGFGGPPGMMGG
GYGWGPWAGHHGGGGGGYGGPRKGFGKGNKDNMAMARFVAHSSGSDTTTV
ASGNTFKKSWLVRNDSTTAWPETCYLVPVSQSCQDLSSPPEAPVVGDVAP
GEEATVSVDLIAPSQPGMYEGYWRVCDDSQRRFGQRLWAKAMVVGSGEDV
NAAVEKLSLDDGHKDK*
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mRNA from alignment at H-elongata_contig19157:194..5653-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19157.5300.1 ID=mRNA_H-elongata_contig19157.5300.1|Name=mRNA_H-elongata_contig19157.5300.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5460bp|location=Sequence derived from alignment at H-elongata_contig19157:194..5653- (Himanthalia elongata Himel1 dioecious)
CAGAATTCCACTTTGTTTCGTACGGGGATGCGATATGGTGCCATGTTCAC
GACGCCCTCTTCTACTACGTTGCTGTAGCAGTGCATTTTGTGAAATGTTT
TAGAGAGGACATACGTGGTTGATTCAAGCCCGATTTAGTAGTTGCTCAAA
ACCCCTCACGACTGTAGAAGCTTGAGGTATGTACCGACGCAGCAAACATT
TGCCAAATATGTTGCGCGTGATCATATTGACCACGTTCGAAGTTCTAAAA
CATTGAAAATCATAATTGTGTTGTGAACGTCTGTCACGTCCCTTAGGGTC
CCAGGGGAGCTCGCATACGCACCACCCCGAGTATGTTCGCTGGCGCTAGC
TACGCCGTGAGTTTGCTGCACGTAGTCTTTGCTTCTTCCGATCAGCTTGT
TGCTTTCGCCCTGTCACTTAAGTGCCTTCACCGCAGTTATTTATTTTCGC
TCACAAGGCACGAGTTTTCTCTCATTGGGAACCTTATGTTCTACTCATTG
AGTAATATGCATCCGTCTTATCTTCTCTCTTAAACGGACCATGCTCATCA
CGGCACCGCGTCGTAAACGGCGCCCCAAAGGGTCCGTTTGCACCGTTTAT
ACAGATATTATGGTGTTTTTCCAAAGGGGGATTCAACCACCTGATTCCTA
TATTTTTTATTATAATTAATTCTCTTATACTAAATCCTATATATTTCCTC
CCTGGCTGATTCAGACTGCCAAAAATTCCATTTTGTACGGGGATTCCAGA
GTTCTCATTCGTTCCGTCCCCTCACCTCCCCCACATTTGTGAAAATTGCG
AAAGGCCTTTCCATCCTCTTGTCTCGCGGGAATTACACGCGACGCCCTCC
CTATGGCACCGCTTAGTTGATATACAAAAGGTCCATCCTGCATAGCCTGA
ATAAGCGCTTACCTCTACGTGTTGTCCTCAAAAGATAGCAAAAGTACACA
CTCGAACCTGACCGTAGTTGGTACCTTGATTTGCACCTCTCGTGGTACTA
GAAAAGTGTAGATGATCAAAAGGGTTTGAATACATCAATATATAGTTAAG
AAAAATGCCTACCGACGGTAGGTTCTCTCATCCCCAGCGGCTCCCGATGC
CTTAAAAGTTTTGTTTTGAATGTTAGAGCGCAGGGTGCGATCGAAAAGGT
ATCCGTTGTCCTCTCCCATTATTAAATTTAAGGAAGGTCCTACCCGAAAA
CCACAAACGGCGAGCGAGTGAAGATGGAATTTCTATCCAATTTAGGTTTG
AGGGTCGGTTGTTATATGAAATATTTTTTCTTCGTATTTCAACTCTTTCC
CACTTTTTTCAAAAATAAGCCCTGCGGAAAACCTCAAAACTGTCTATACA
AGAACATCGCGATAATTCCGTCTGGGTTGAGAGAATGAGCAGGCTGTCGC
GGGACGGGACGGCCGAAACCTGTCTCGCAAGACCAAATTCTCGCTGACCA
CAAGCAGGAGGCAGCCAAACCGATTGATCCTTACTATAGGCTATACAATA
TGTGATGACGTCATGAACACACGCACCCCTCTGCTGCTCTGCTGGCCACC
CCGAACCAAATATGCCCGACTCTTGTGTCATCAAATATATAGCAAGAATA
GCATCAACCGGATGTGGCTGCGTAGCTCCAACGCAGCAGCAGTGGAGGAT
GTTTTTTTTCGAGCAGCTTCTATCTTATTGGTGACAATGCGGTAGAGGTA
ACGCTTTCGCTTTGGAGGGGACGCTATACAACCCTTGGTACAAGGTTTTT
CTAATAAAAATCCGCGAGCGTTTCTGTCAACCATTTTCTCGTGGGTTTGT
GGGATTTCACATTCTAGTACACGCCCTGGTAGATTACGGGGGAATCCCCC
CCTTGCCCAAGTTTTTTTTTTTTTTTTAAGGATTTAAGCGACATCCGTTT
TTCGTATCGTGGATCAAAAAGAGACAAGCCTTCTGTAAATTCGTTATTCA
ACGTTTTTATTTTCACGAAAGGTACTAAGCCTCGAGGAACTGCGCGCGAT
CACTGTTTCTAACTTCCGTATTTATTTTTTTCATAATTTCCTACGTTCAT
ATCTAAACTACCATGCCACCATCTTCGCTGATTCTTTTGGCCGACGTGAA
TCTTCCATCGCGCAGGTCCGTTTCGACACGGATGCTGAGCTTGACCTTGC
CATCCGCAGCTCTCCTTCTCCGCTCCGGGTCGTGGCCCAGAACTCGTGTC
CGCAAGGTATGATGGCAGGGACACCTCACCATCCGTCTCCCCACACCCCT
TCTCATGAACCAGTTCAACGGCCCCACCAGCGGTCGCATCTAGGTCCCCC
GAGGCACGCTCCTCCGGCCGCTTTCGACCCTAATATACCGTCCACGCCAG
GGTACGCGATGGCCTCAAACGTCGGTTCAGTGTTGGGTGACGAAGACATG
ATTGTGGTCGGCATGCCGAGGGGGGCTAGAAGAGGCCTCGACGCTTCCGG
TAACGACGGAGAGGGAAATGAAATGGACACCACGAGAGCGATCGATGCGC
ATGCCGCCTTTGAAGTCGAGACCGCCGCGGCACGCGACCCCGAAGAAAGC
ATGCTATACCAAAAGGCTTCCATTCACCTCTCCAAGAAGTTCAAGGTTCA
CCTTACGCCGACCCAGCTCTGGCGGGTGCTGGCGCTCTTCCAAATCCAGG
GTCGTCAGCTTGTTGCTTTCGGCCTTGCCCCGCACAGTGCGCTCAACATC
AACACAGACCCTTCATCCACAGGGGAGGGGTCCGACGTCTACGAGAGCAC
CACGGGCGAGCGCTGTGGCATGAAGCGCAACAAAAGCTACATGGCGCAAA
GCGCCGTGGTGAATCCGGTACACGACCTGCTTGCTCTCAACGGCGTCCCC
ATGCCAGAGGATGAAGTGCAGCCCTTGCTGGAGGCTCTTCGCGTTCGCCC
GCGGCAGCTTGTCAAGCGGGGTCTCTTACCTCAAGAGATTCTAGCGGAGA
TGCCGGATGGCCACGGAGGTCCCCGCGGCGGACCTCATGGTCGCCACATG
CACTCTCACCGTGAGCACTTCGGACACGAGGGGGCAGGACGGGGTCGAGG
AGGCCGTGGGCCTCACCCATTCCGCCCCCCGCACATGCATCCTCACAGGG
CCCACGGGCGTGGTCCCCACCCCCACGGACCTCACGGCATCGAAGAAAGC
TACCCGGTGCCGCCTCACCTCGGCGTGGGAGGACCGCACGTGCCACCGCC
TCATATGGCTGCTGCGCATTCTCCTCCGCCCCCCCCTTCCCACATGCAAG
ATGGTGCCCATGGAGGAGCGGGATGGTGGCCCCACGGACATCCTGGAGAC
ATGAGGGGGCCCCACGGACACGGTCCTCACCCTCATCTGTGGCATGGACC
TCCCGGGCCTCATAGCTACGGGGGTGGATTCGGAGGTCCTCCTGGGATGA
TGGGCGGTGGCTACGGTTGGGGACCATGGGCCGGCCACCACGGAGGTGGA
GGCGGTGGCTACGGTGGCCCCAGGAAGGGCTTCGGCAAGGGCAACAAGGA
CAACATGGCCATGGCGAGGTTCGTGGCGCACTCGTCTGGCAGCGATACTA
CGACTGTCGCCAGCGGTAATACTTTCAAAAAGTCATGGCTAGTCCGCAAC
GACTCCACGACGGCCTGGCCCGAGACCTGCTATCTCGTGCCTGTTAGCCA
GAGTTGCCAAGATCTCTCTTCCCCCCCCGAGGCCCCAGTGGTCGGCGACG
TTGCCCCGGGCGAGGAAGCTACCGTCTCCGTGGACCTCATCGCGCCTTCC
CAGCCTGGAATGTACGAGGGATACTGGCGCGTCTGCGACGACAGCCAGCG
TCGCTTCGGTCAGCGTCTCTGGGCTAAGGCAATGGTGGTTGGATCCGGAG
AAGACGTGAATGCAGCCGTGGAGAAGCTGTCCTTGGACGATGGACACAAG
GACAAATAACTAAGGGATAAAATTCCACCATGATAAGTGACGTCGTACCA
ACGCAAGCATGCGAGCAAGATCTCCCAAGTTGGCACTCGTATTGATCGCA
GTCTCGAGCTTCTACAGCAGTAGGTTCGAGCGGTCGAGGGCCTCTTCGGA
AGGCTTGACTTCGTATTCGGACGCAACTTTTGGCTTCTCCGCCCCTGCAT
TTATTTTATATACAGTAGCAAACTCTCTTCCTAATGTTTTGAAGCAATGC
CAAGCATGGCAGGGGAGTGTGATTGTATTGTCATAGAAAAATTGAAATGA
GATTCGCCAGCAGCGCGGAAAAGCAATACATTAGGCCGATGTCTAAAATA
GGTGGTGTAGATGACGTAGAAAGCGCGACAATTGAGAGCACAAACGTAAA
TCATCGATGTCTGTACCCGGGTAACTCCTAAAGGAAACGGCGAAATGAGT
TTTGTCGAAATTGGCATGTCGCGCGCGGATGATATTACCGCGATCATCGG
GAGTTCAAAAGGTATTATAACATAATATATATATGGTACATATATATTTT
TGTTGATTTTCGAAAGTTGAAGTGAAGATTTTCGAAAGTTGAAGCGTAGA
ATGCAGAAATGAGTTAGCACATGCGAAAAGCATTTGATTCATTGTCGAGG
GTCAGATGACGCTCAATGCGCGGCAATTGACAGCGCAATTGATTTTGTCG
AAGGCTATGTGAACAGCGCAAATGTCGCCGACTTCTCTAACGCTTGAGGA
AGTCCCGATGGTTTGACGCCAAAACGAAGCGCAAATGTCGCTGACTTCCA
TAAGTCTTGAGAGGAAGTGGCGATGATTTGACGCAAGGAGGAAAATGGAA
GGATACAAAATTGGAAATTGGCTAGATTGGGGCAATGGATCTTCGGTGGT
AGTAGTTTGGTAGGGGGGCGAAGGTTTGTAATGTTGGGATTTTTTCGCTG
CGAGCAAGGGGTATGACAGTGGAGCTTATTATGTTAATGCAACATATGTA
GGTAGAAAAGAGGGTTTGGCGAGGAAGCATCGCGTTTGTTCTATTCGTCA
CAACTAGGTGCGATAAACGTGTTGCCATGACCGAGTTATTAATATTTTTC
TCTTTCGACCTGAGGAAGTAGTGATTTGTGGTATTACGTATATAGCTCCG
TTGAAGACTGACATCAAAATGCTGCAATGATGACTGACGTGTTGGATTTA
TTTTTTGAGTCTCGAATTCAAGGGTATTATATTTCATATTTTGTTTGGAA
GCTGGATTCTTTTTATGATACGAGTCCGGGTAGTAAGCTGATGCACAATA
TATTGTTTGGAGAATGCATTAAAAAAAAAAAAGTACTCTTAAAACACGGG
TGTTATTTCTTATACGGAATCAAATCTAAAACAATTTCCCCTCAAAAATC
ATGTTGAAAATAGAGCGAGAAAATTTGAACACCAAACCTCATGCTCCAAA
TCTATACTCGCAGTACTAATAACCAGGGCTGCTTACATGACCGGCAATTA
CACATGACCAGTGCCGGAACCGGTTTTCGGTTCGGTACTGATTTTTTTTC
TCAAAACCGG
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Coding sequence (CDS) from alignment at H-elongata_contig19157:194..5653-

>mRNA_H-elongata_contig19157.5300.1 ID=mRNA_H-elongata_contig19157.5300.1|Name=mRNA_H-elongata_contig19157.5300.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3402bp|location=Sequence derived from alignment at H-elongata_contig19157:194..5653- (Himanthalia elongata Himel1 dioecious)
ATGATGGCAGGGACACCTCACCATCCGTCTCCCCACACCCCTTCTCATGA
ACCAGTTCAACGGCCCCACCAGCGGTCGCATCTAGGTCCCCCGAGGCACG
CTCCTCCGGCCGCTTTCGACCCTAATATACCGTCCACGCCAGGGTACGCG
ATGGCCTCAAACGTCGGTTCAGTGTTGGGTGACGAAGACATGATTGTGGT
CGGCATGCCGAGGGGGGCTAGAAGAGGCCTCGACGCTTCCGGTAACGACG
GAGAGGGAAATGAAATGGACACCACGAGAGCGATCGATGCGCATGCCGCC
TTTGAAGTCGAGACCGCCGCGGCACGCGACCCCGAAGAAAGCATGCTATA
CCAAAAGGCTTCCATTCACCTCTCCAAGAAGTTCAAGGTTCACCTTACGC
CGACCCAGCTCTGGCGGGTGCTGGCGCTCTTCCAAATCCAGGGTCGTCAG
CTTGTTGCTTTCGGCCTTGCCCCGCACAGTGCGCTCAACATCAACACAGA
CCCTTCATCCACAGGGGAGGGGTCCGACGTCTACGAGAGCACCACGGGCG
AGCGCTGTGGCATGAAGCGCAACAAAAGCTACATGGCGCAAAGCGCCGTG
GTGAATCCGGTACACGACCTGCTTGCTCTCAACGGCGTCCCCATGCCAGA
GGATGAAGTGCAGCCCTTGCTGGAGGCTCTTCGCGTTCGCCCGCGGCAGC
TTGTCAAGCGGGGTCTCTTACCTCAAGAGATTCTAGCGGAGATGCCGGAT
GGCCACGGAGGTCCCCGCGGCGGACCTCATGGTCGCCACATGCACTCTCA
CCGTGAGCACTTCGGACACGAGGGGGCAGGACGGGGTCGAGGAGGCCGTG
GGCCTCACCCATTCCGCCCCCCGCACATGCATCCTCACAGGGCCCACGGG
CGTGGTCCCCACCCCCACGGACCTCACGGCATCGAAGAAAGCTACCCGGT
GCCGCCTCACCTCGGCGTGGGAGGACCGCACGTGCCACCGCCTCATATGG
CTGCTGCGCATTCTCCTCCGCCCCCCCCTTCCCACATGCAAGATGGTGCC
CATGGAGGAGCGGGATGGTGGCCCCACGGACATCCTGGAGACATGAGGGG
GCCCCACGGACACGGTCCTCACCCTCATCTGTGGCATGGACCTCCCGGGC
CTCATAGCTACGGGGGTGGATTCGGAGGTCCTCCTGGGATGATGGGCGGT
GGCTACGGTTGGGGACCATGGGCCGGCCACCACGGAGGTGGAGGCGGTGG
CTACGGTGGCCCCAGGAAGGGCTTCGGCAAGGGCAACAAGGACAACATGG
CCATGGCGAGGTTCGTGGCGCACTCGTCTGGCAGCGATACTACGACTGTC
GCCAGCGGTAATACTTTCAAAAAGTCATGGCTAGTCCGCAACGACTCCAC
GACGGCCTGGCCCGAGACCTGCTATCTCGTGCCTGTTAGCCAGAGTTGCC
AAGATCTCTCTTCCCCCCCCGAGGCCCCAGTGGTCGGCGACGTTGCCCCG
GGCGAGGAAGCTACCGTCTCCGTGGACCTCATCGCGCCTTCCCAGCCTGG
AATGTACGAGGGATACTGGCGCGTCTGCGACGACAGCCAGCGTCGCTTCG
GTCAGCGTCTCTGGGCTAAGGCAATGGTGGTTGGATCCGGAGAAGACGTG
AATGCAGCCGTGGAGAAGCTGTCCTTGGACGATGGACACAAGGACAAATA
AATGATGGCAGGGACACCTCACCATCCGTCTCCCCACACCCCTTCTCATG
AACCAGTTCAACGGCCCCACCAGCGGTCGCATCTAGGTCCCCCGAGGCAC
GCTCCTCCGGCCGCTTTCGACCCTAATATACCGTCCACGCCAGGGTACGC
GATGGCCTCAAACGTCGGTTCAGTGTTGGGTGACGAAGACATGATTGTGG
TCGGCATGCCGAGGGGGGCTAGAAGAGGCCTCGACGCTTCCGGTAACGAC
GGAGAGGGAAATGAAATGGACACCACGAGAGCGATCGATGCGCATGCCGC
CTTTGAAGTCGAGACCGCCGCGGCACGCGACCCCGAAGAAAGCATGCTAT
ACCAAAAGGCTTCCATTCACCTCTCCAAGAAGTTCAAGGTTCACCTTACG
CCGACCCAGCTCTGGCGGGTGCTGGCGCTCTTCCAAATCCAGGGTCGTCA
GCTTGTTGCTTTCGGCCTTGCCCCGCACAGTGCGCTCAACATCAACACAG
ACCCTTCATCCACAGGGGAGGGGTCCGACGTCTACGAGAGCACCACGGGC
GAGCGCTGTGGCATGAAGCGCAACAAAAGCTACATGGCGCAAAGCGCCGT
GGTGAATCCGGTACACGACCTGCTTGCTCTCAACGGCGTCCCCATGCCAG
AGGATGAAGTGCAGCCCTTGCTGGAGGCTCTTCGCGTTCGCCCGCGGCAG
CTTGTCAAGCGGGGTCTCTTACCTCAAGAGATTCTAGCGGAGATGCCGGA
TGGCCACGGAGGTCCCCGCGGCGGACCTCATGGTCGCCACATGCACTCTC
ACCGTGAGCACTTCGGACACGAGGGGGCAGGACGGGGTCGAGGAGGCCGT
GGGCCTCACCCATTCCGCCCCCCGCACATGCATCCTCACAGGGCCCACGG
GCGTGGTCCCCACCCCCACGGACCTCACGGCATCGAAGAAAGCTACCCGG
TGCCGCCTCACCTCGGCGTGGGAGGACCGCACGTGCCACCGCCTCATATG
GCTGCTGCGCATTCTCCTCCGCCCCCCCCTTCCCACATGCAAGATGGTGC
CCATGGAGGAGCGGGATGGTGGCCCCACGGACATCCTGGAGACATGAGGG
GGCCCCACGGACACGGTCCTCACCCTCATCTGTGGCATGGACCTCCCGGG
CCTCATAGCTACGGGGGTGGATTCGGAGGTCCTCCTGGGATGATGGGCGG
TGGCTACGGTTGGGGACCATGGGCCGGCCACCACGGAGGTGGAGGCGGTG
GCTACGGTGGCCCCAGGAAGGGCTTCGGCAAGGGCAACAAGGACAACATG
GCCATGGCGAGGTTCGTGGCGCACTCGTCTGGCAGCGATACTACGACTGT
CGCCAGCGGTAATACTTTCAAAAAGTCATGGCTAGTCCGCAACGACTCCA
CGACGGCCTGGCCCGAGACCTGCTATCTCGTGCCTGTTAGCCAGAGTTGC
CAAGATCTCTCTTCCCCCCCCGAGGCCCCAGTGGTCGGCGACGTTGCCCC
GGGCGAGGAAGCTACCGTCTCCGTGGACCTCATCGCGCCTTCCCAGCCTG
GAATGTACGAGGGATACTGGCGCGTCTGCGACGACAGCCAGCGTCGCTTC
GGTCAGCGTCTCTGGGCTAAGGCAATGGTGGTTGGATCCGGAGAAGACGT
GAATGCAGCCGTGGAGAAGCTGTCCTTGGACGATGGACACAAGGACAAAT
AA
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