prot_H-elongata_contig191459.5295.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig191459.5295.1
Unique Nameprot_H-elongata_contig191459.5295.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI)

HSP 1 Score: 85.9 bits (211), Expect = 2.460e-17
Identity = 42/108 (38.89%), Postives = 71/108 (65.74%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSK--IPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENPG 106
            + +A Y +G  I RDR  R L + Q +Y++++++++ ++   +  +P  +GV TLS+ D P+ PEE+E M +  Y  AVGA+M+T+T TRPD+A A+   +R+  NPG
Sbjct:  536 LGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPG 642          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI)

HSP 1 Score: 85.9 bits (211), Expect = 2.510e-17
Identity = 42/108 (38.89%), Postives = 71/108 (65.74%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSK--IPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENPG 106
            + +A Y +G  I RDR  R L + Q +Y++++++++ ++   +  +P  +GV TLS+ D P+ PEE+E M +  Y  AVGA+M+T+T TRPD+A A+   +R+  NPG
Sbjct:  930 LGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPG 1036          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A438BR63_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BR63_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 2.970e-17
Identity = 41/108 (37.96%), Postives = 70/108 (64.81%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSK--IPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENPG 106
            + +A Y +G  I RDR  R L + Q +Y++++++++ ++   +  +P  +GV TLS+ D P+ PEE+E M +  Y  AVGA+M+T+T TRPD+  A+   +R+  NPG
Sbjct:   17 LGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVTYALSVASRYQANPG 123          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 79.3 bits (194), Expect = 4.600e-15
Identity = 40/108 (37.04%), Postives = 70/108 (64.81%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSK--IPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENPG 106
            + +A Y +G  I RDR  R L + Q +Y++++++++ ++K  +  +P   GV +LS+ + P+  EE+E M +  Y  AVGA+M+T+T TRPD+A A+   +R+  NPG
Sbjct:  319 LGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPG 425          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5KDF0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDF0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.880e-15
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 105
            + D ++Y G    RD  AR LKI Q  Y E +  +F V+ G +IP  +G+  LS+ D      + EE+  +++R+ +G+LMW  T TRPDIA+AVRAVAR+  +P
Sbjct:  656 LGDLRWYSGCFYERDWDARTLKISQQTYAEELGMEFGVEYGKEIPLPAGL-KLSEFD------QDEEVVSWSFRELIGSLMWLATQTRPDIANAVRAVARYFASP 753          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.720e-15
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 105
            + D ++Y G    RD  A  LKI Q  Y E +  +F V+ G +IP   G+  LS+ D      + EE+  + +R+ +G+LMW  T TRPDIA+AVRAVAR+C +P
Sbjct:   93 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASP 190          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.740e-15
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 105
            + D ++Y G    RD  A  LKI Q  Y E +  +F V+ G +IP   G+  LS+ D      + EE+  + +R+ +G+LMW  T TRPDIA+AVRAVAR+C +P
Sbjct:  152 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASP 249          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.480e-15
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 105
            + D ++Y G    RD  A  LKI Q  Y E +  +F V+ G +IP   G+  LS+ D      + EE+  + +R+ +G+LMW  T TRPDIA+AVRAVAR+C +P
Sbjct:  326 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASP 423          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.750e-15
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 105
            + D ++Y G    RD  A  LKI Q  Y E +  +F V+ G +IP   G+  LS+ D      + EE+  + +R+ +G+LMW  T TRPDIA+AVRAVAR+C +P
Sbjct:  847 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASP 944          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.790e-15
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 0
Query:    1 MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 105
            + D ++Y G    RD  A  LKI Q  Y E +  +F V+ G +IP   G+  LS+ D      + EE+  + +R+ +G+LMW  T TRPDIA+AVRAVAR+C +P
Sbjct:  126 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASP 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438K5H3_VITVI2.460e-1738.89Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JH99_VITVI2.510e-1738.89Retrovirus-related Pol polyprotein from transposon... [more]
A0A438BR63_VITVI2.970e-1737.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3MAN7_TRIPR4.600e-1537.04Retrotransposon protein putative Ty1-copia subclas... [more]
A0A6H5KDF0_9PHAE4.880e-1541.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L0Z9_9PHAE5.720e-1541.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE5.740e-1541.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE6.480e-1541.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE6.750e-1541.90Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JBA7_9PHAE6.790e-1541.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191459contigH-elongata_contig191459:1..318 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191459.5295.1mRNA_H-elongata_contig191459.5295.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig191459 1..522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig191459.5295.1 ID=prot_H-elongata_contig191459.5295.1|Name=mRNA_H-elongata_contig191459.5295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGV
PTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVAR
FCENPG
back to top