mRNA_H-elongata_contig19144.5294.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: D7FQT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT9_ECTSI) HSP 1 Score: 314 bits (804), Expect = 1.370e-101 Identity = 148/151 (98.01%), Postives = 148/151 (98.01%), Query Frame = 1
Query: 1 GTGGVVNTRMCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 453
G GGVVNTRMCYMCFDDVDE NPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR
Sbjct: 400 GGGGVVNTRMCYMCFDDVDEPGNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 550
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: A0A835ZD25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD25_9STRA) HSP 1 Score: 270 bits (689), Expect = 1.020e-86 Identity = 123/143 (86.01%), Postives = 134/143 (93.71%), Query Frame = 1
Query: 25 RMCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 453
+MCYMCFDD DE +NPLVAPC+CKGDTRYVHL CLQ+WHTTTSENKVCVVLNNKGVRVCTVCKSPYK SVRLP GESISLFQSPLPPPYICFMVVT+HQNNE+LFSTKYQLSF+SV+NR G +++ LVVGRSRQCDMVLDYR
Sbjct: 177 KMCYMCFDDEDEPANPLVAPCDCKGDTRYVHLGCLQRWHTTTSENKVCVVLNNKGVRVCTVCKSPYKPSVRLPTGESISLFQSPLPPPYICFMVVTKHQNNEDLFSTKYQLSFSSVVNRSGAGASRGLVVGRSRQCDMVLDYR 319
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: A0A836C9Y1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Y1_9STRA) HSP 1 Score: 271 bits (694), Expect = 5.990e-86 Identity = 122/143 (85.31%), Postives = 135/143 (94.41%), Query Frame = 1
Query: 25 RMCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 453
+MCYMCFDD DEA NPLVAPC+CKGDTRYVHL CLQKWHTTT ENKVCVVLNNKGVRVCTVCKSPYKASVRLP G+S+SLF+SPLPPPYICFMVVT+HQNNE+LFSTKYQLSF+SV+NR GT S++ L++GRSRQCDMVLDYR
Sbjct: 302 KMCYMCFDDEDEADNPLVAPCDCKGDTRYVHLGCLQKWHTTTLENKVCVVLNNKGVRVCTVCKSPYKASVRLPTGDSVSLFESPLPPPYICFMVVTKHQNNEDLFSTKYQLSFSSVVNRAGTGSSRGLIIGRSRQCDMVLDYR 444
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: A0A6H5JTH3_9PHAE (FHA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH3_9PHAE) HSP 1 Score: 201 bits (510), Expect = 1.610e-62 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1
Query: 163 VCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 453
VCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR
Sbjct: 2 VCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 98
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: A0A7S4DHT1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT1_HETAK) HSP 1 Score: 204 bits (518), Expect = 1.270e-59 Identity = 90/141 (63.83%), Postives = 110/141 (78.01%), Query Frame = 1
Query: 31 CYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 453
CYMCFD +E NPLVAPCECKGDTRYVHL CLQ+WH +++ N+VCVV N G VC+VCK+PYK V L G + L + L PPYICF VVT+HQN+++LFSTKYQLSF++V+NR T ST+ LV+GRS CDM+LDYR
Sbjct: 234 CYMCFDGTEEDDNPLVAPCECKGDTRYVHLKCLQRWHVSSNGNQVCVVCNQNGAHVCSVCKAPYKTHVILKDGTTSDLLRPSLNPPYICFTVVTQHQNSDDLFSTKYQLSFDTVLNRSRTQSTRGLVIGRSHHCDMILDYR 374
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: A0A836CMN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMN7_9STRA) HSP 1 Score: 184 bits (467), Expect = 8.970e-53 Identity = 85/145 (58.62%), Postives = 110/145 (75.86%), Query Frame = 1
Query: 31 CYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVM-NRGG---TASTKELVVGRSRQCDMVLDYR 453
CYMCFDD +E NPLVAPCEC+G T+YVH++CLQ+WHT+ ++ C+V N KG +VC VCK+PYK +RLP G+ I L + L PP+I F V TRHQ+ EELFST++ LSF+S+M +RGG AS + LV+GRS+ DMVLDYR
Sbjct: 276 CYMCFDDDEEGDNPLVAPCECRGSTKYVHVHCLQRWHTSKERHQPCIVSNKKGAQVCGVCKAPYKTHLRLPNGDFIPLLRPQLRPPFISFTVCTRHQHQEELFSTRFHLSFSSLMLSRGGGAAQASQRPLVIGRSQTSDMVLDYR 420
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: A0A7R9U7Z2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Z2_9STRA) HSP 1 Score: 173 bits (438), Expect = 2.580e-48 Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = 1
Query: 28 MCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 453
+CY+CFD + NPLVAPC+C+GDT+Y+HLNCLQKW+ T ++ VC V G + C VCK+ YK +L G ISL + L PPYICF+VVT+H LF T++QLSF SVM+ GT +T+EL +GRS CDM LDYR
Sbjct: 230 ICYICFDGENTEDNPLVAPCQCRGDTQYLHLNCLQKWYETNEDSHVCAVYTTTGTQHCPVCKAKYKTHAKLQDGRIISLRRRELAPPYICFIVVTKHDAASVLFQTRFQLSFASVMSPDGTEATRELTIGRSHNCDMPLDYR 371
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: B8BYQ3_THAPS (Uncharacterized protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8BYQ3_THAPS) HSP 1 Score: 155 bits (393), Expect = 2.090e-45 Identity = 66/141 (46.81%), Postives = 100/141 (70.92%), Query Frame = 1
Query: 31 CYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 453
CYMCFD+ D A NP++ PC+C GDTRYVH++CL+KWHT ++N+VC + + C+VCKS +++ +L G + LF+S L PPY+ +V T+H+ + LF+T++QLSF++++ G T+ L++GRS DMVLDYR
Sbjct: 1 CYMCFDEEDTAENPMITPCKCLGDTRYVHVDCLRKWHTAEADNQVCFLSSVDAT--CSVCKSTFRSDFKLKDGRLVKLFKSSLEPPYVSLLVATKHEMAQRLFNTRFQLSFSTLLKPDGRNGTRPLLLGRSSGSDMVLDYR 139
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: A0A7S3DUX3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DUX3_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.250e-44 Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = 1
Query: 28 MCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 453
+CYMCFD+ D NP++ PC+C GDT+YVH+ CL+KWHT ++N++C + + C+VCKS +K+ +L G + LF+S L PPYI +V T+H+ + LF+T++QLSFN++M G +T+ L++GRS DMVLDYR
Sbjct: 30 VCYMCFDEEDTDENPMITPCKCAGDTKYVHVECLRKWHTAEADNQICFLSSVDAT--CSVCKSTFKSDFKLKDGRHVKLFKSSLEPPYISLLVATKHEMAQRLFNTRFQLSFNTIMKPDGRNATRPLLLGRSSGSDMVLDYR 169
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Match: A0A7R9Z764_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z764_9STRA) HSP 1 Score: 158 bits (400), Expect = 2.140e-43 Identity = 67/142 (47.18%), Postives = 102/142 (71.83%), Query Frame = 1
Query: 28 MCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKELVVGRSRQCDMVLDYR 453
+CYMCFD+ D NPL+ PC+C GDTRYVH+NCL+KWHT ++N++C + + C+VCKS +K+ +L G ++ LF+S L PPY+ +V T+H+ + LF+T++QLSF++++ G +T+ L++GRS DMVLDYR
Sbjct: 219 VCYMCFDEEDTEENPLITPCKCLGDTRYVHVNCLRKWHTAEADNQICFLSSVDAT--CSVCKSTFKSDFKLKDGRTMKLFKSSLEPPYVSLLVATKHEMAQRLFNTRFQLSFSTLLKPDGRNATRPLLLGRSSGSDMVLDYR 358 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19144.5294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19144.5294.1 >prot_H-elongata_contig19144.5294.1 ID=prot_H-elongata_contig19144.5294.1|Name=mRNA_H-elongata_contig19144.5294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp MCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLback to top mRNA from alignment at H-elongata_contig19144:3029..4422+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19144.5294.1 ID=mRNA_H-elongata_contig19144.5294.1|Name=mRNA_H-elongata_contig19144.5294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1394bp|location=Sequence derived from alignment at H-elongata_contig19144:3029..4422+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19144:3029..4422+ >mRNA_H-elongata_contig19144.5294.1 ID=mRNA_H-elongata_contig19144.5294.1|Name=mRNA_H-elongata_contig19144.5294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig19144:3029..4422+ (Himanthalia elongata Himel1 dioecious)back to top |