mRNA_H-elongata_contig106491.529.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A6H5JEX1_9PHAE (Fumarate hydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX1_9PHAE) HSP 1 Score: 146 bits (368), Expect = 9.200e-41 Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 1
Query: 25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNR--AIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQ 255
+VIQGKL+ HFPLVVFQTGSGTQTNMNCNEVISNR AIE+LGGA GSKKPVHPNDHVNMGQSSNDSFPTAMHIAAI+Q
Sbjct: 35 EVIQGKLDDHFPLVVFQTGSGTQTNMNCNEVISNRHVAIEILGGAKGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAIMQ 113
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: D8LDX4_ECTSI (Fumarate hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX4_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.160e-40 Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 1
Query: 25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQ 255
+VI+GKL+ HFPLVVFQTGSGTQTNMNCNEVISNRAIE+LGG GSKKPVHPNDHVNMGQSSNDSFPTAMHIAAI+Q
Sbjct: 96 EVIRGKLDDHFPLVVFQTGSGTQTNMNCNEVISNRAIEILGGVKGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAIMQ 172
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A257VVA6_9PROT (Fumarate hydratase (Fragment) n=1 Tax=Rhodospirillales bacterium 12-54-5 TaxID=1970562 RepID=A0A257VVA6_9PROT) HSP 1 Score: 144 bits (362), Expect = 3.270e-40 Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 1
Query: 16 SVAQVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
+ +V++GKL+GHFPLVV+QTGSGTQTNMN NEVISNRAIE+LGG MGSKKPVHPNDHVNMGQSSNDSFPTAMHIAA +V
Sbjct: 88 AATEVMEGKLDGHFPLVVWQTGSGTQTNMNANEVISNRAIEILGGTMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAACEEV 168
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A482UFD1_9ARCH (Fumarate hydratase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UFD1_9ARCH) HSP 1 Score: 141 bits (355), Expect = 4.460e-40 Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 1
Query: 25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
+V++GKL+ HFPLVVFQTGSGTQTNMN NEV+SNR IEL+GG MGSKKPVHPNDHVNMG SSNDSFPTAMH+AA+L V
Sbjct: 31 EVMEGKLDEHFPLVVFQTGSGTQTNMNVNEVVSNRCIELMGGTMGSKKPVHPNDHVNMGMSSNDSFPTAMHVAAVLMV 108
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A397D1L0_9STRA (Lyase_1 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D1L0_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.180e-39 Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1
Query: 28 VIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
VI GKL+ HFPLVVFQTGSGTQ+NMN NEVISNRAIE +GG +GSK PVHPNDHVNMGQSSNDSFPTAMHIAA+L++
Sbjct: 104 VIAGKLDDHFPLVVFQTGSGTQSNMNTNEVISNRAIEFMGGELGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVLEI 180
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A847GEX0_9BACT (Fumarate hydratase (Fragment) n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GEX0_9BACT) HSP 1 Score: 138 bits (347), Expect = 2.440e-39 Identity = 63/78 (80.77%), Postives = 72/78 (92.31%), Query Frame = 1
Query: 25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
+VI+G L+ HFPLV++QTGSGTQTNMN NEVISNRAIELLGG +GSKKPVHPNDHVNM QSSND+FPTAMHIAA+L +
Sbjct: 78 EVIEGALDDHFPLVIWQTGSGTQTNMNANEVISNRAIELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLMI 155
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A7S0Q6F2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q6F2_9EUKA) HSP 1 Score: 134 bits (337), Expect = 4.480e-39 Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1
Query: 25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
+VI GKL HFPLVV+QTGSGTQTNMN NEVI+NRAIE+LGG +GSKKPVHPNDHVN QSSND+FPTAMHIAA+L V
Sbjct: 13 EVIAGKLMDHFPLVVWQTGSGTQTNMNVNEVIANRAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAVLSV 90
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A212CR92_CEREH (Fumarate hydratase, mitochondrial n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A212CR92_CEREH) HSP 1 Score: 136 bits (342), Expect = 1.510e-38 Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1
Query: 25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
+V +GKLN HFPLVV+QTGSGTQTNMN NEVISNRAIE+LGG +GSKKPVHPNDHVN QSSND+FPTAMHIAA ++V
Sbjct: 90 EVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEILGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAIEV 167
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A7V8AAB3_9PROT (Fumarate hydratase n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A7V8AAB3_9PROT) HSP 1 Score: 136 bits (343), Expect = 1.840e-38 Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1
Query: 25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
+VI+GKLN HFPLVV+QTGSGTQ+NMN NEVISNRAIE+LGG MGSKKP+HPNDHVNM QSSND+FPTAMHIA +V
Sbjct: 78 EVIEGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGEMGSKKPIHPNDHVNMSQSSNDTFPTAMHIACAEEV 155
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: UPI00138FD1F1 (fumarate hydratase class II-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FD1F1) HSP 1 Score: 132 bits (333), Expect = 2.120e-38 Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 1
Query: 25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
+VI GKL HFPLVV+QTGSGTQ+NMN NEVISNRAIEL+GG MGSKKPVHPNDHVN QSSND+FPTAMH+A ++V
Sbjct: 6 EVISGKLKDHFPLVVWQTGSGTQSNMNVNEVISNRAIELMGGEMGSKKPVHPNDHVNKSQSSNDTFPTAMHVACAIEV 83 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106491.529.1 >prot_H-elongata_contig106491.529.1 ID=prot_H-elongata_contig106491.529.1|Name=mRNA_H-elongata_contig106491.529.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp DPWNPSVAQVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGback to top mRNA from alignment at H-elongata_contig106491:160..1094- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106491.529.1 ID=mRNA_H-elongata_contig106491.529.1|Name=mRNA_H-elongata_contig106491.529.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=935bp|location=Sequence derived from alignment at H-elongata_contig106491:160..1094- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106491:160..1094- >mRNA_H-elongata_contig106491.529.1 ID=mRNA_H-elongata_contig106491.529.1|Name=mRNA_H-elongata_contig106491.529.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig106491:160..1094- (Himanthalia elongata Himel1 dioecious)back to top |