mRNA_H-elongata_contig19140.5290.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19140.5290.1 vs. uniprot
Match: D7FXA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA3_ECTSI) HSP 1 Score: 246 bits (628), Expect = 8.150e-79 Identity = 140/249 (56.22%), Postives = 162/249 (65.06%), Query Frame = 1
Query: 1 VGFRDDTSYLAAHYGNRIHKRSSDNTT-------QSNSVLNQQYNTTALNQGLSSSQSVGVTGACNDGRDAYCVGNPPSTGRGRRRGPLRTLRGVETRTPGTGIGSGATSKRPSLSEQLASIGKAAEAITADIRKTHGLKPAQGAILTTPSESFLVGKLKCKYPSPVHFFSHKCVYTFHHPFEATRITMEMFFRDMRDAVLDSSRRQLRFKIDHPLCHYRRDYAHDDPSHFVVVGLSSELDIQRVANEI 726
VGFRDDTSYL AHYG R +R++ TT + S + Q + T +S+ T + + G G R G G RP+LSEQLASIGKAAE ITA IRK+HGLKP +GAILTTPSESFLVGKL+CKYPSPV FF+HKCVYTFHHPFEATRITMEMFFRDMR A LDS RR+LRFKIDHPLCHY +DY+HDDPSHFVV+ SS LD +RV ++
Sbjct: 9 VGFRDDTSYLTAHYGGRSPRRTTRVTTHGIPRPPEKASPVGSQADPTV--------KSIAPTRGSRPASTGVVIARRETIGVGARN-----------------AGEGRFLVRPTLSEQLASIGKAAEDITAGIRKSHGLKPLEGAILTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATRITMEMFFRDMRSAALDSPRRELRFKIDHPLCHYTKDYSHDDPSHFVVIQFSSGLDAERVLEKV 232
BLAST of mRNA_H-elongata_contig19140.5290.1 vs. uniprot
Match: A0A7S2FRD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FRD3_9STRA) HSP 1 Score: 137 bits (346), Expect = 2.100e-36 Identity = 74/142 (52.11%), Postives = 96/142 (67.61%), Query Frame = 1
Query: 313 RPSLSEQLASIGKAAEAITADIRKTHGLKPAQGA-----ILTTPSESFLVGKLKCKYPSPVHFFSHKCVYTFHHPFEATRITMEMFFRDMRDAVLDSSRRQLRFKIDHPLCHYRR--DYAHDDPSHFVVVGLSSELDIQRVA 717
RPSLSEQLASIG +A +IT +IRKTH L G +L P+ +F VGKL+C+YPSPV FF+ +C Y F+HP E+ +ITMEM++RDMR AVL R LRFKIDH L + DY D +H++ +GL+S D + VA
Sbjct: 44 RPSLSEQLASIGASAGSITDEIRKTHKLDDHHGTASGKPLLRVPARAFTVGKLECRYPSPVQFFADQCTYIFNHPHESKQITMEMYYRDMRQAVLSEGTRSLRFKIDHLLDKFTTPGDYNPHDRNHYITIGLASVADARAVA 185
BLAST of mRNA_H-elongata_contig19140.5290.1 vs. uniprot
Match: A0A6H5K4P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P7_9PHAE) HSP 1 Score: 114 bits (284), Expect = 4.640e-29 Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 544 MEMFFRDMRDAVLDSSRRQLRFKIDHPLCHYRRDYAHDDPSHFVVVGLSSELDIQRVANEIMPLVRRSKGVR 759
MEMFFRDMR AVLD RR+LRFKIDHPLCHY +DY+H+DPSHFVV+ SS LD RV +IMPL+RRS GVR
Sbjct: 1 MEMFFRDMRSAVLDHRRRELRFKIDHPLCHYTKDYSHNDPSHFVVIQFSSGLDADRVLEKIMPLIRRSGGVR 72
BLAST of mRNA_H-elongata_contig19140.5290.1 vs. uniprot
Match: A0A7S2ST53_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST53_9STRA) HSP 1 Score: 120 bits (301), Expect = 4.910e-29 Identity = 66/136 (48.53%), Postives = 87/136 (63.97%), Query Frame = 1
Query: 310 KRPSLSEQLASIGKAAEAITADIRKTHGLKPAQGAILTTPSESFLVGKLKCKYPSPVHFFSHKCVYTFHHPFEATRITMEMFFRDMRDAVLDSSRRQLRFKIDHPLCHYRRDYAHDDPSHFVVVGLSSELDIQRVA 717
+RP+LS+QL++IG A IT +IR HGL L P+ F VG L CK+P+PV FF C Y F+HPFEA +ITM M++RDM DA L SRR+LRF+I L Y ++Y DP H + + L+SE D + VA
Sbjct: 145 RRPTLSDQLSAIGATAGNITKEIRTKHGLAQPAEPELRVPALKFEVGTLTCKFPAPVEFFPGHCSYVFNHPFEAKQITMLMYYRDMMDAALSVSRRELRFRIHGLLDKYIQEYDPCDPRHLLRICLASENDTRAVA 280
BLAST of mRNA_H-elongata_contig19140.5290.1 vs. uniprot
Match: A0A1V9YA22_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA22_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 8.510e-20 Identity = 58/145 (40.00%), Postives = 86/145 (59.31%), Query Frame = 1
Query: 313 RPSLSEQLASIGKAAEAITADIRKTHGLKPAQGAILTTPSESFLVGKLKCKYPSPVHFFSHKCVYTFHHPFEATR-ITMEMFFRDMRDAVLDSSRRQLRFKIDHPLCHYRRDYAHDDPSHFVVVGLSSELDIQRVANEIMPLVRR 744
RPSLSEQLA+IG+ A+++ + + PA LT P+ + VG+L+CK+PSPVHF C Y F A+R I M M++RDM + L+FKI H L + DY H +P+H+VV+G +S D +RV + ++ + R
Sbjct: 70 RPSLSEQLATIGQQAQSLVNALSRE---APASTK-LTVPTATMTVGRLECKFPSPVHFEDAVCRYQF---LVASRDIAMYMYYRDMTHVTFEQRSWSLKFKIAHALDQFGSDYDHTNPNHYVVIGFASMSDWRRVQSFLLSKLPR 207
BLAST of mRNA_H-elongata_contig19140.5290.1 vs. uniprot
Match: A0A6G0WIX3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIX3_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.220e-19 Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1
Query: 310 KRPSLSEQLASIGKAAEAITADIRKTHGLKPAQGAI--LTTPSESFLVGKLKCKYPSPVHFFSHKCVYTFHHPFEATRITMEMFFRDMRDAVLDSSRRQLRFKIDHPLCHYRRDYAHDDPSHFVVVGLSSELDIQRV 714
KRPSLS+QLASIG AE++ ++K + + P+ +VG+L+CK+PSP+ FF C Y F H I M M++RDM D ++ R LRF+I H L + DY + + +H + +G +S+ D RV
Sbjct: 70 KRPSLSDQLASIGLQAESVARSLKKRTNDDEMTSNVERMRLPTLRMVVGRLECKFPSPIVFFDQLCRYQFVHG--GRDIAMYMYYRDMTDISMEKKRLTLRFRIPHALAQFGADYDYHNQNHAIEIGFASQTDWNRV 204
BLAST of mRNA_H-elongata_contig19140.5290.1 vs. uniprot
Match: A0A485KAI9_9STRA (Aste57867_1521 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAI9_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.330e-12 Identity = 49/132 (37.12%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 322 LSEQLASIGKAAEAITADIRKTHGLKPAQGAI-LTTPSESFLVGKLKCKYPSPVHFFSHKCVYTFHHPFEATRITMEMFFRDMRDAVLDSSRRQLRFKIDHPLCHYRR-DYAHDDPSHFVVVGLSSELDIQR 711
LS+QLASIG +A+A+ + K P + T P+ +VG+L+CK+PSPV F H Y F H I M M+F+DM D ++FKI HPL + DY H + +H + +G +S D+ R
Sbjct: 81 LSDQLASIGASAQALVDSLSK-----PTNDPLSFTLPTLRLVVGRLECKFPSPVSFSPHLLRYQFLHG--GHDIAMLMYFQDMVDVTFHLPSLSVKFKIPHPLTEFAHGDYDHLNRNHMLHIGFASATDLAR 205
BLAST of mRNA_H-elongata_contig19140.5290.1 vs. uniprot
Match: A0A1W0A1J9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1J9_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 3.170e-5 Identity = 37/87 (42.53%), Postives = 48/87 (55.17%), Query Frame = 1
Query: 310 KRPSLSEQLASI-GKAAEAITADIRKTHGLKPAQGAILTTPSESFLVGKLKCKYPSPVHFFSHKCVYTFHHPFEATRITMEMFFRDM 567
+RPSLS+QLA I GK + + RK G LT P+ S VG+L+CK+PSPVHF C Y F + I M M++ DM
Sbjct: 62 QRPSLSQQLALISGKTQQLVDTLQRKDVG-----SGKLTVPTASMTVGRLECKFPSPVHFEDKVCRYQF--MTSSRDIAMFMYYCDM 141 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19140.5290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19140.5290.1 >prot_H-elongata_contig19140.5290.1 ID=prot_H-elongata_contig19140.5290.1|Name=mRNA_H-elongata_contig19140.5290.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp VGFRDDTSYLAAHYGNRIHKRSSDNTTQSNSVLNQQYNTTALNQGLSSSQback to top mRNA from alignment at H-elongata_contig19140:2981..5739- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19140.5290.1 ID=mRNA_H-elongata_contig19140.5290.1|Name=mRNA_H-elongata_contig19140.5290.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2759bp|location=Sequence derived from alignment at H-elongata_contig19140:2981..5739- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19140:2981..5739- >mRNA_H-elongata_contig19140.5290.1 ID=mRNA_H-elongata_contig19140.5290.1|Name=mRNA_H-elongata_contig19140.5290.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig19140:2981..5739- (Himanthalia elongata Himel1 dioecious)back to top |