prot_H-elongata_contig191373.5288.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig191373.5288.1
Unique Nameprot_H-elongata_contig191373.5288.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length167
Homology
BLAST of mRNA_H-elongata_contig191373.5288.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 65.9 bits (159), Expect = 1.930e-9
Identity = 48/162 (29.63%), Postives = 77/162 (47.53%), Query Frame = 0
Query:    1 WRNLETHYRAKGTREIIRVSHEINGKIMEPGGDPFKFMMEIDRLAADLNRLGDKSVTELRKCVIIISGLPTDYEMECRMLGNNPVGFNRAEIERVVGNQYNRLLRQQHNLKAMSASKGHI------TANRGKGGDR---RQHPKFNRKCFNCGKGGHDARDC 153
            W  L   Y        + ++  ++   ME G    K + + D L   L  LG+  + E R+ VI++S LPT+YE+ C ++  N   F   E++  +  +Y RL +++   +A+ A+          T   GKG      R++  F  KCFNCG+ GH  RDC
Sbjct:   84 WNTLRDFYNRTTMHNRVTMTRRLHEFKMEGGVTMAKHLDDFDELIVGLQTLGEP-LDEARQLVILLSSLPTEYELICSIV-ENAKDFTLIEVKEKLLKEYERLDKKEGAERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMKRDC 243          
BLAST of mRNA_H-elongata_contig191373.5288.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.870e-8
Identity = 48/170 (28.24%), Postives = 76/170 (44.71%), Query Frame = 0
Query:    1 WRNLETHYRAKGTREIIRVSHEINGKIMEPGGDPFKFMMEIDRLAADLNRLGDKSVTELRKCVIIISGLPTDYEMECRMLGNNPVGFNRAEIERVVGNQYNRLLRQQHNLKAMSASKGHITANRGK-----------GGDRRQHPKFNRKCFNCGKGGHDARDCMASEES 159
            W  L   Y        + ++  ++   ME G    K +   D L   L  LG+  + E R+ VI++S LPT+YE+   ++ N+       E++  +  +Y RL ++     A+ A     TAN GK           G   R++  F  KC+NC + GH  RDC +S  S
Sbjct:   84 WNTLRDFYNRMTRHNRVSMTRRLHEFKMEDGVTMAKHLDNFDELVVGLQTLGEP-LDEARQLVILLSSLPTEYELISSIVENSK-DVTLIEVKERLLKEYERLEKKDGTESALKA-----TANGGKFKNAKSFKGRKGNSARKNNAFKGKCYNCDQIGHMKRDCPSSNVS 246          
BLAST of mRNA_H-elongata_contig191373.5288.1 vs. uniprot
Match: A0A225UQ90_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQ90_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.060e-7
Identity = 46/175 (26.29%), Postives = 79/175 (45.14%), Query Frame = 0
Query:    1 WRNLETHYRAKGTREIIRVSHEINGKIMEPGGDPFKFMMEIDRLAADLNRLGDKSVTELRKCVIIISGLPTDYEMECRMLGNNPVGFNRAEIERVVGNQYNRLLRQQHNLKAMSAS------------KGHITANRGKGGDRRQHPKFNRKCFNCGKGGHDARDCMASEESGATD 163
            W  L   Y        + ++H ++   ME G    + + +   L   L  LG+ S+ + R+ VI++S LPT++E+   +  NN       E++  +  +Y R  +++ + +A+ A+            KG    NR K  + R+   F  KCFNCG+ GH  RDC       + D
Sbjct:    4 WNTLLEFYNRTTMHNRVTMTHRLHEFKMEDGSTMARHLDKFVELFVGLQTLGE-SLDDSRQLVILLSSLPTEFELIASIEENNK-DVTLIEVKDKLIKEYERQQKKEISERALKATSFGGMSKSGKFGKGDKGYNR-KSNNGRRLVGFKGKCFNCGQAGHMKRDCPEKVSGNSND 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191373.5288.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
H3H572_PHYRM1.930e-929.63Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A329SN38_9STRA4.870e-828.24Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A225UQ90_9STRA5.060e-726.29Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 139..155
e-value: 0.0064
score: 24.8
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 138..154
e-value: 2.4E-4
score: 21.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 138..153
score: 10.51
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..83
e-value: 3.5E-7
score: 30.0
NoneNo IPR availableGENE3D4.10.60.10coord: 117..166
e-value: 6.3E-6
score: 28.0
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 123..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191373contigH-elongata_contig191373:164..664 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191373.5288.1mRNA_H-elongata_contig191373.5288.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig191373 164..664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig191373.5288.1 ID=prot_H-elongata_contig191373.5288.1|Name=mRNA_H-elongata_contig191373.5288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
WRNLETHYRAKGTREIIRVSHEINGKIMEPGGDPFKFMMEIDRLAADLNR
LGDKSVTELRKCVIIISGLPTDYEMECRMLGNNPVGFNRAEIERVVGNQY
NRLLRQQHNLKAMSASKGHITANRGKGGDRRQHPKFNRKCFNCGKGGHDA
RDCMASEESGATDNRKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf