mRNA_H-elongata_contig106491.529.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106491.529.1
Unique NamemRNA_H-elongata_contig106491.529.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A6H5JEX1_9PHAE (Fumarate hydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 9.200e-41
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 1
Query:   25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNR--AIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQ 255
            +VIQGKL+ HFPLVVFQTGSGTQTNMNCNEVISNR  AIE+LGGA GSKKPVHPNDHVNMGQSSNDSFPTAMHIAAI+Q
Sbjct:   35 EVIQGKLDDHFPLVVFQTGSGTQTNMNCNEVISNRHVAIEILGGAKGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAIMQ 113          
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: D8LDX4_ECTSI (Fumarate hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX4_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.160e-40
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 1
Query:   25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQ 255
            +VI+GKL+ HFPLVVFQTGSGTQTNMNCNEVISNRAIE+LGG  GSKKPVHPNDHVNMGQSSNDSFPTAMHIAAI+Q
Sbjct:   96 EVIRGKLDDHFPLVVFQTGSGTQTNMNCNEVISNRAIEILGGVKGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAIMQ 172          
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A257VVA6_9PROT (Fumarate hydratase (Fragment) n=1 Tax=Rhodospirillales bacterium 12-54-5 TaxID=1970562 RepID=A0A257VVA6_9PROT)

HSP 1 Score: 144 bits (362), Expect = 3.270e-40
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   16 SVAQVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
            +  +V++GKL+GHFPLVV+QTGSGTQTNMN NEVISNRAIE+LGG MGSKKPVHPNDHVNMGQSSNDSFPTAMHIAA  +V
Sbjct:   88 AATEVMEGKLDGHFPLVVWQTGSGTQTNMNANEVISNRAIEILGGTMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAACEEV 168          
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A482UFD1_9ARCH (Fumarate hydratase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UFD1_9ARCH)

HSP 1 Score: 141 bits (355), Expect = 4.460e-40
Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
            +V++GKL+ HFPLVVFQTGSGTQTNMN NEV+SNR IEL+GG MGSKKPVHPNDHVNMG SSNDSFPTAMH+AA+L V
Sbjct:   31 EVMEGKLDEHFPLVVFQTGSGTQTNMNVNEVVSNRCIELMGGTMGSKKPVHPNDHVNMGMSSNDSFPTAMHVAAVLMV 108          
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A397D1L0_9STRA (Lyase_1 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D1L0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.180e-39
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1
Query:   28 VIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
            VI GKL+ HFPLVVFQTGSGTQ+NMN NEVISNRAIE +GG +GSK PVHPNDHVNMGQSSNDSFPTAMHIAA+L++
Sbjct:  104 VIAGKLDDHFPLVVFQTGSGTQSNMNTNEVISNRAIEFMGGELGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVLEI 180          
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A847GEX0_9BACT (Fumarate hydratase (Fragment) n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GEX0_9BACT)

HSP 1 Score: 138 bits (347), Expect = 2.440e-39
Identity = 63/78 (80.77%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
            +VI+G L+ HFPLV++QTGSGTQTNMN NEVISNRAIELLGG +GSKKPVHPNDHVNM QSSND+FPTAMHIAA+L +
Sbjct:   78 EVIEGALDDHFPLVIWQTGSGTQTNMNANEVISNRAIELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLMI 155          
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A7S0Q6F2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q6F2_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 4.480e-39
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1
Query:   25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
            +VI GKL  HFPLVV+QTGSGTQTNMN NEVI+NRAIE+LGG +GSKKPVHPNDHVN  QSSND+FPTAMHIAA+L V
Sbjct:   13 EVIAGKLMDHFPLVVWQTGSGTQTNMNVNEVIANRAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAVLSV 90          
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A212CR92_CEREH (Fumarate hydratase, mitochondrial n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A212CR92_CEREH)

HSP 1 Score: 136 bits (342), Expect = 1.510e-38
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
            +V +GKLN HFPLVV+QTGSGTQTNMN NEVISNRAIE+LGG +GSKKPVHPNDHVN  QSSND+FPTAMHIAA ++V
Sbjct:   90 EVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEILGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAIEV 167          
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: A0A7V8AAB3_9PROT (Fumarate hydratase n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A7V8AAB3_9PROT)

HSP 1 Score: 136 bits (343), Expect = 1.840e-38
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
            +VI+GKLN HFPLVV+QTGSGTQ+NMN NEVISNRAIE+LGG MGSKKP+HPNDHVNM QSSND+FPTAMHIA   +V
Sbjct:   78 EVIEGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEMLGGEMGSKKPIHPNDHVNMSQSSNDTFPTAMHIACAEEV 155          
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Match: UPI00138FD1F1 (fumarate hydratase class II-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FD1F1)

HSP 1 Score: 132 bits (333), Expect = 2.120e-38
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 1
Query:   25 QVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGGAMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV 258
            +VI GKL  HFPLVV+QTGSGTQ+NMN NEVISNRAIEL+GG MGSKKPVHPNDHVN  QSSND+FPTAMH+A  ++V
Sbjct:    6 EVISGKLKDHFPLVVWQTGSGTQSNMNVNEVISNRAIELMGGEMGSKKPVHPNDHVNKSQSSNDTFPTAMHVACAIEV 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106491.529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEX1_9PHAE9.200e-4189.87Fumarate hydratase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LDX4_ECTSI1.160e-4089.61Fumarate hydratase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A257VVA6_9PROT3.270e-4082.72Fumarate hydratase (Fragment) n=1 Tax=Rhodospirill... [more]
A0A482UFD1_9ARCH4.460e-4082.05Fumarate hydratase (Fragment) n=1 Tax=archaeon Tax... [more]
A0A397D1L0_9STRA1.180e-3983.12Lyase_1 domain-containing protein (Fragment) n=1 T... [more]
A0A847GEX0_9BACT2.440e-3980.77Fumarate hydratase (Fragment) n=1 Tax=Candidatus H... [more]
A0A7S0Q6F2_9EUKA4.480e-3980.77Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A212CR92_CEREH1.510e-3880.77Fumarate hydratase, mitochondrial n=2 Tax=Laurasia... [more]
A0A7V8AAB3_9PROT1.840e-3880.77Fumarate hydratase n=1 Tax=Hyphomonadaceae bacteri... [more]
UPI00138FD1F12.120e-3878.21fumarate hydratase class II-like n=1 Tax=Nematoste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106491contigH-elongata_contig106491:160..1094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue1.7e-33
Seed eggNOG ortholog2880.D8LDX4
KEGG rclassRC00443
KEGG koko:K01679
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
EggNOG free text desc.fumarate hydratase activity
EggNOG OGsCOG0114@1,KOG1317@2759
EC4.2.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.4000585-CDS-H-elongata_contig106491:159..2891622929595.4000585-CDS-H-elongata_contig106491:159..289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106491 160..289 -
1691679084.0164366-CDS-H-elongata_contig106491:159..2891691679084.0164366-CDS-H-elongata_contig106491:159..289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106491 160..289 -
1622929595.4130535-CDS-H-elongata_contig106491:966..10941622929595.4130535-CDS-H-elongata_contig106491:966..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106491 967..1094 -
1691679084.0262978-CDS-H-elongata_contig106491:966..10941691679084.0262978-CDS-H-elongata_contig106491:966..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106491 967..1094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106491.529.1prot_H-elongata_contig106491.529.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106491 160..1094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106491.529.1

>prot_H-elongata_contig106491.529.1 ID=prot_H-elongata_contig106491.529.1|Name=mRNA_H-elongata_contig106491.529.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
DPWNPSVAQVIQGKLNGHFPLVVFQTGSGTQTNMNCNEVISNRAIELLGG
AMGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAILQV
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mRNA from alignment at H-elongata_contig106491:160..1094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106491.529.1 ID=mRNA_H-elongata_contig106491.529.1|Name=mRNA_H-elongata_contig106491.529.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=935bp|location=Sequence derived from alignment at H-elongata_contig106491:160..1094- (Himanthalia elongata Himel1 dioecious)
GATCCGTGGAACCCATCGGTTGCGCAGGTGATTCAGGGGAAGCTCAACGG GCATTTTCCGCTCGTGGTATTCCAGACGGGCAGCGGTACTCAGACCAACA TGAACTGCAACGAGGTCATCTCGAACAGGTAGAGGTAAAGACGCCCTAGC CTTTAAAACACACACGCACATATGAAAAAATACACATACACACACACACA CACACACACACACACACAATCAATTACGAGAGTAGCCTAGAAGGACTAGG ATGACAGAACCGGATTGTGCGGTTATGTGAAATTTAATAAATACACACAC ACACACACACACACTCAATTACATTGTTCTTTGCGCAGTACTGTAGCTCA TCTCTTTTTACTTTTTAGGCTATAAGGCTGATTGGTTGGTTGGTTGGGCT GCTACAGAGTATTATCTTTGCTTGCTGATGCATCTCCTTTGTCACGTCTG AGTAGAGATTTTTGTAGCAAATATGATTGAATCCCTACATTTGGAGGATC GATGCGAGAGTAGCCTGAAAGGACTAGCATGACAGGGACGGATTGCGCGA TTATGTGCAAGTTAATTAACACACATACACATACTCACACAATCACGGCA ATAAGTCCTGGATAGAGTCTAGTGGAAAGGAAACGAAAGGCGATACAGCA CGGTAATAATGCCTTCCACGGTGGTCCAGGGACTGTTCGTTTCCCGATGC TGCTGAAAAGCCATGGTAACAGACAACCCAACCGGGTTTGGTAGGAATAG TTGGAACCTGCCCGCAACAAGGCCAACCCGTACGCACGCGCGCACGTGCT GCCAGAGCAATCGAGCTCCTCGGAGGGGCCATGGGGAGCAAGAAGCCCGT GCATCCCAACGACCACGTCAACATGGGACAGTCTTCAAACGACAGCTTCC CGACCGCCATGCATATCGCGGCCATTCTGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig106491:160..1094-

>mRNA_H-elongata_contig106491.529.1 ID=mRNA_H-elongata_contig106491.529.1|Name=mRNA_H-elongata_contig106491.529.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig106491:160..1094- (Himanthalia elongata Himel1 dioecious)
GATCCGTGGAACCCATCGGTTGCGCAGGTGATTCAGGGGAAGCTCAACGG
GCATTTTCCGCTCGTGGTATTCCAGACGGGCAGCGGTACTCAGACCAACA
TGAACTGCAACGAGGTCATCTCGAACAGGATCCGTGGAACCCATCGGTTG
CGCAGGTGATTCAGGGGAAGCTCAACGGGCATTTTCCGCTCGTGGTATTC
CAGACGGGCAGCGGTACTCAGACCAACATGAACTGCAACGAGGTCATCTC
GAACAGAGCAATCGAGCTCCTCGGAGGGGCCATGGGGAGCAAGAAGCCCG
TGCATCCCAACGACCACGTCAACATGGGACAGTCTTCAAACGACAGCTTC
CCGACCGCCATGCATATCGCGGCCATTCTGCAGGTGAGCAATCGAGCTCC
TCGGAGGGGCCATGGGGAGCAAGAAGCCCGTGCATCCCAACGACCACGTC
AACATGGGACAGTCTTCAAACGACAGCTTCCCGACCGCCATGCATATCGC
GGCCATTCTGCAGGTG
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