mRNA_H-elongata_contig191286.5285.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191286.5285.1
Unique NamemRNA_H-elongata_contig191286.5285.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: D7FXM7_ECTSI (Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.440e-33
Identity = 61/78 (78.21%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTMEQ 234
            ++KD+APP LQAVRL+AQYLS+PE SREI  ETLKMWL+DP SCNNPTVQLLA AVF HEGDLKE++++IRNGVTMEQ
Sbjct:   60 EIKDDAPPALQAVRLMAQYLSNPE-SREIVIETLKMWLTDPGSCNNPTVQLLAAAVFTHEGDLKEAVRSIRNGVTMEQ 136
[Close]
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A836CM75_9STRA (Coatomer subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM75_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.230e-17
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    4 VKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTMEQ 234
            V D+AP  LQA +LLA Y + PE +R++   TL  WL DP S +NPT+QLLA  ++C E +LKE+I+ IRNGVTMEQ
Sbjct:   62 VSDSAPTSLQACKLLATYEAQPE-NRDMVLLTLGEWLDDPSSGHNPTLQLLAADIYCREDNLKEAIRAIRNGVTMEQ 137
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BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A7S2XUN8_9STRA (Coatomer subunit epsilon n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUN8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.170e-16
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
            +V DN+ P LQAVRLLAQYLS P +SRE+  ETL  WL+D    ++PT+QL++  ++ HE DLK ++K +  GVTME
Sbjct:   60 EVNDNSAPSLQAVRLLAQYLSDP-SSRELVLETLPQWLTDN---HSPTLQLISAQIYMHENDLKNALKAVGQGVTME 132
[Close]
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A1Q3BCF6_CEPFO (Coatomer subunit epsilon n=2 Tax=fabids TaxID=91835 RepID=A0A1Q3BCF6_CEPFO)

HSP 1 Score: 80.5 bits (197), Expect = 2.860e-16
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
            ++  +A  PLQAV+LLA YLSSP+ ++E+A  +LK WL+DP   NNPT++L+AG VF H+ D  E++K   +G TME
Sbjct:   60 EIDSSAATPLQAVKLLALYLSSPD-NKEMAISSLKEWLADPAIANNPTLRLIAGIVFMHQEDFNEALKHTNSGGTME 135
[Close]
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: Q9MAX8_SOYBN (Coatomer subunit epsilon n=24 Tax=50 kb inversion clade TaxID=2231393 RepID=Q9MAX8_SOYBN)

HSP 1 Score: 79.3 bits (194), Expect = 6.030e-16
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
            ++ D+AP PLQAV+LLA Y SSP+T ++ A  +LK WL+DP   NN T++L+AG VF HE D  E++K    G TME
Sbjct:   59 EIHDDAPTPLQAVKLLALYFSSPDT-KDSAIASLKEWLADPAIGNNATLRLVAGLVFLHENDFNEALKHTNAGGTME 134
[Close]
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A445IW60_GLYSO (Coatomer subunit epsilon-1 isoform B n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445IW60_GLYSO)

HSP 1 Score: 79.3 bits (194), Expect = 6.240e-16
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
            ++ D+AP PLQAV+LLA Y SSP+T ++ A  +LK WL+DP   NN T++L+AG VF HE D  E++K    G TM+
Sbjct:   59 EIHDDAPTPLQAVKLLALYFSSPDT-KDSAIASLKEWLADPAIANNATLRLVAGLVFLHENDFNEALKHTNAGGTMD 134
[Close]
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A2I0L3F1_PUNGR (Coatomer subunit epsilon n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2I0L3F1_PUNGR)

HSP 1 Score: 77.8 bits (190), Expect = 2.400e-15
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
            ++ D+AP PLQ V+LLA YLSSP+ ++E    +LK WL+DP   NNP ++L+AG +F HE D  E++K    G TME
Sbjct:   65 EIDDSAPTPLQGVKLLALYLSSPD-NKESVISSLKEWLADPAIGNNPILRLIAGTIFMHEQDYNEALKHTNAGGTME 140
[Close]
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A1J7FUQ5_LUPAN (Coatomer subunit epsilon n=4 Tax=Lupinus TaxID=3869 RepID=A0A1J7FUQ5_LUPAN)

HSP 1 Score: 77.4 bits (189), Expect = 2.930e-15
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   13 NAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
            NAP PLQAV+LLA YLSSP+  +E    +LK WLSDP   NN T++L+AG +F HE D  E++K    G TME
Sbjct:   63 NAPTPLQAVKLLALYLSSPD-DKESTISSLKEWLSDPAIGNNATLRLIAGIIFLHEQDFNEALKYTNAGGTME 134
[Close]
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A444WP95_ARAHY (Uncharacterized protein n=2 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WP95_ARAHY)

HSP 1 Score: 76.6 bits (187), Expect = 3.050e-15
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    1 QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTME 231
            ++  NAP PLQAV+LLA Y S   + +E A  +LK WL+DP   NNPT++L+AG +F HE D  E++K    G TME
Sbjct:   59 EIDQNAPTPLQAVKLLALYFSG-ASQKESAISSLKEWLADPAIGNNPTLRLIAGTIFLHEQDFNEALKYTNAGGTME 134
[Close]
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Match: A0A7S2F9R0_9STRA (Coatomer subunit epsilon n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9R0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.410e-15
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 QVKD--NAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQLLAGAVFCHEGDLKESIKTIRNGVTMEQ 234
            ++KD    P  LQAV+LLA+YLS P +S+E+   TL  WL+DP S  N ++QL+A  ++ HE + K+++KTIR+G TMEQ
Sbjct:   60 EIKDAPGTPVSLQAVKLLARYLSDP-SSKELVLMTLGEWLADPGSAGNSSLQLIAAVIYMHENNTKDALKTIRHGTTMEQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191286.5285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXM7_ECTSI1.440e-3378.21Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CM75_9STRA1.230e-1755.84Coatomer subunit epsilon n=1 Tax=Tribonema minus T... [more]
A0A7S2XUN8_9STRA1.170e-1653.25Coatomer subunit epsilon n=1 Tax=Fibrocapsa japoni... [more]
A0A1Q3BCF6_CEPFO2.860e-1650.65Coatomer subunit epsilon n=2 Tax=fabids TaxID=9183... [more]
Q9MAX8_SOYBN6.030e-1651.95Coatomer subunit epsilon n=24 Tax=50 kb inversion ... [more]
A0A445IW60_GLYSO6.240e-1650.65Coatomer subunit epsilon-1 isoform B n=1 Tax=Glyci... [more]
A0A2I0L3F1_PUNGR2.400e-1549.35Coatomer subunit epsilon n=3 Tax=cellular organism... [more]
A0A1J7FUQ5_LUPAN2.930e-1554.79Coatomer subunit epsilon n=4 Tax=Lupinus TaxID=386... [more]
A0A444WP95_ARAHY3.050e-1549.35Uncharacterized protein n=2 Tax=Arachis hypogaea T... [more]
A0A7S2F9R0_9STRA3.410e-1548.75Coatomer subunit epsilon n=1 Tax=Florenciella parv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191286contigH-elongata_contig191286:103..339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.8e-26
Seed eggNOG ortholog2880.D7FXM7
Preferred nameCOPE1
KEGG koko:K17268
GOsGO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0006900,GO:0006901,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1990841
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG3081@1,KOG3081@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930092.621638-CDS-H-elongata_contig191286:102..3391622930092.621638-CDS-H-elongata_contig191286:102..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191286 103..339 -
1691679277.364752-CDS-H-elongata_contig191286:102..3391691679277.364752-CDS-H-elongata_contig191286:102..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191286 103..339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191286.5285.1prot_H-elongata_contig191286.5285.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191286 103..339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191286.5285.1

>prot_H-elongata_contig191286.5285.1 ID=prot_H-elongata_contig191286.5285.1|Name=mRNA_H-elongata_contig191286.5285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
QVKDNAPPPLQAVRLLAQYLSSPETSREIATETLKMWLSDPVSCNNPTVQ
LLAGAVFCHEGDLKESIKTIRNGVTMEQ*
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mRNA from alignment at H-elongata_contig191286:103..339-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191286.5285.1 ID=mRNA_H-elongata_contig191286.5285.1|Name=mRNA_H-elongata_contig191286.5285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig191286:103..339- (Himanthalia elongata Himel1 dioecious)
CAGGTGAAGGACAACGCGCCACCACCACTGCAGGCGGTCCGCCTCCTGGC
TCAGTACCTGTCGTCCCCGGAAACAAGCCGCGAGATCGCGACGGAAACCC
TCAAGATGTGGCTCAGTGATCCGGTGTCGTGCAACAACCCCACCGTCCAG
CTCCTCGCGGGAGCGGTGTTCTGCCACGAGGGAGACCTTAAGGAGTCTAT
CAAGACCATCAGGAACGGCGTCACCATGGAACAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig191286:103..339-

>mRNA_H-elongata_contig191286.5285.1 ID=mRNA_H-elongata_contig191286.5285.1|Name=mRNA_H-elongata_contig191286.5285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig191286:103..339- (Himanthalia elongata Himel1 dioecious)
CAGGTGAAGGACAACGCGCCACCACCACTGCAGGCGGTCCGCCTCCTGGC
TCAGTACCTGTCGTCCCCGGAAACAAGCCGCGAGATCGCGACGGAAACCC
TCAAGATGTGGCTCAGTGATCCGGTGTCGTGCAACAACCCCACCGTCCAG
CTCCTCGCGGGAGCGGTGTTCTGCCACGAGGGAGACCTTAAGGAGTCTAT
CAAGACCATCAGGAACGGCGTCACCATGGAACAGTGACAGGTGAAGGACA
ACGCGCCACCACCACTGCAGGCGGTCCGCCTCCTGGCTCAGTACCTGTCG
TCCCCGGAAACAAGCCGCGAGATCGCGACGGAAACCCTCAAGATGTGGCT
CAGTGATCCGGTGTCGTGCAACAACCCCACCGTCCAGCTCCTCGCGGGAG
CGGTGTTCTGCCACGAGGGAGACCTTAAGGAGTCTATCAAGACCATCAGG
AACGGCGTCACCATGGAACAGTGA
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