mRNA_H-elongata_contig191163.5281.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191163.5281.1
Unique NamemRNA_H-elongata_contig191163.5281.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.340e-62
Identity = 106/114 (92.98%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 342
            +GIETVRRDGCPL+VK+LEKVLR+LF TKDLSQVKGYL RQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMA+DPRAEPKYCER+PYVVVAGPVGARLMDLV
Sbjct: 2819 KGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMANDPRAEPKYCERIPYVVVAGPVGARLMDLV 2932
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 2.500e-62
Identity = 107/114 (93.86%), Postives = 111/114 (97.37%), Query Frame = 1 
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 342
            +GIETVRRDGCPL+VK+LEKVLR+LF TKDLSQVKGYL RQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMA DPRAEPKYCERVPYVVVAGPVGARLMDLV
Sbjct: 2678 KGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMAIDPRAEPKYCERVPYVVVAGPVGARLMDLV 2791
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A8J4F9P8_9CHLO (DNA polymerase (Fragment) n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4F9P8_9CHLO)

HSP 1 Score: 155 bits (391), Expect = 1.800e-41
Identity = 77/115 (66.96%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 342
            +GIETVRRD CP V K+LE+ LR+LF  +DL+ VK YL RQWT+IL++R +V DFIFAKEVRLGTY+++   +PP+A+VA+KAMA+DPRAEP+Y ERVPYVVV G  GARL+DLV
Sbjct:  563 KGIETVRRDSCPAVAKMLEQSLRLLFTARDLTAVKTYLRRQWTKILSNRVSVRDFIFAKEVRLGTYSANAATIPPAAVVATKAMAADPRAEPRYAERVPYVVVHGEPGARLVDLV 677
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A0D2LUE3_9CHLO (DNA-directed DNA polymerase (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LUE3_9CHLO)

HSP 1 Score: 145 bits (365), Expect = 4.350e-41
Identity = 71/114 (62.28%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDL 339
            +GIETVRRDGCP V K+LE VLR+LF+T DLS V+ Y  RQW +IL +R ++ DF+F KEVRLGTY+ +   +PP+A+VA++AMA+DPRAEP++ ERVPYVVV G   ARL+DL
Sbjct:  109 KGIETVRRDGCPAVSKMLESVLRVLFSTADLSLVRSYCARQWAKILANRVSLQDFVFCKEVRLGTYSVNAATLPPAAVVAARAMAADPRAEPRHGERVPYVVVYGEPNARLVDL 222
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A7J7QK52_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QK52_9CHLO)

HSP 1 Score: 153 bits (387), Expect = 6.650e-41
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYA-SDVYMPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 342
            +GIETVRRDGCP V K+LE  LR LF T+DLS VK Y  RQW +IL++R +V DF+F KEVRLG+YA S   +PP+AIVA+KAMA+DPRAEP+Y ERVPYVVVAG  G+RL+DLV
Sbjct: 3195 KGIETVRRDGCPAVSKMLEACLRQLFTTRDLSAVKDYCTRQWAKILSNRVSVQDFVFCKEVRLGSYAPSASSLPPAAIVAAKAMAADPRAEPRYGERVPYVVVAGAPGSRLIDLV 3309
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A383VJ50_TETOB (DNA polymerase zeta catalytic subunit n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VJ50_TETOB)

HSP 1 Score: 153 bits (386), Expect = 9.060e-41
Identity = 77/115 (66.96%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 342
            +GIETVRRDGCP V K+LE  LR LF ++DLS VKGY  RQW +IL++R +V DF+F KEVRLG+YA     +PP+AIVA+KAMA+DPRAEP+Y ERVPYVVVAG  G+RL+DLV
Sbjct: 3262 KGIETVRRDGCPAVSKMLEACLRELFTSRDLSAVKGYCTRQWAKILSNRVSVQDFVFCKEVRLGSYAPTASSLPPAAIVAAKAMAADPRAEPRYGERVPYVVVAGAPGSRLIDLV 3376
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A7S2T8Z2_9CHLO (DNA-directed DNA polymerase (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T8Z2_9CHLO)

HSP 1 Score: 147 bits (372), Expect = 1.320e-40
Identity = 73/115 (63.48%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDV-YMPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 342
            +GIET+RRD CP V K+LE+ LR+LF + DLS VK YL +QW +I   R ++ DF+FAKEVRLGTY++    +PP+AIVA+KAMA DPRAEPKY ERVPYVVV G  GARL+D+V
Sbjct:  276 KGIETIRRDSCPAVAKLLERSLRILFESADLSLVKRYLLKQWGKIFKSRVSIQDFVFAKEVRLGTYSAKASVVPPAAIVAAKAMALDPRAEPKYAERVPYVVVHGEPGARLVDMV 390
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A8IZI8_CHLRE (DNA polymerase (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IZI8_CHLRE)

HSP 1 Score: 152 bits (383), Expect = 1.430e-40
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMD 336
            +GIETVRRD CP V K+LE+ +R+LF +KDLS VK YL RQWT+IL++R +V DFIFAKEVRLGTY+++   MPP+A VA++AMA+DPRAEPKY ERVPYVVV    GARL+D
Sbjct:  476 KGIETVRRDSCPAVAKLLEQSIRLLFGSKDLSGVKSYLQRQWTKILSNRVSVQDFIFAKEVRLGTYSANAATMPPAAEVAARAMAADPRAEPKYAERVPYVVVHAEPGARLVD 588
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A835WRV5_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WRV5_9CHLO)

HSP 1 Score: 152 bits (384), Expect = 1.700e-40
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMD 336
            +GIETVRRD CP V K+LE+ +R+LF +KDLS VK YL RQWT+IL++R +V DFIFAKEVRLGTY+++   MPP+A VA++AMA+DPRAEPKY ERVPYVVV    GARL+D
Sbjct: 5718 KGIETVRRDSCPAVAKLLEQSIRLLFGSKDLSAVKAYLRRQWTKILSNRVSVQDFIFAKEVRLGTYSANAATMPPAAEVAARAMAADPRAEPKYAERVPYVVVHAEPGARLVD 5830
[Close]
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: D8UAI7_VOLCA (DNA polymerase (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UAI7_VOLCA)

HSP 1 Score: 151 bits (382), Expect = 1.990e-40
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:   10 ETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 342
            ETVRRD CP V K+LE+ LR+LF ++DLS VK YL RQWT+IL++R +V DFIFAKEVRLGTY+++   +PP+A+VA+KAMA DPRAEP+Y ERVPYVVV G  GARL+DLV
Sbjct:  481 ETVRRDSCPAVAKLLEQSLRLLFGSRDLSDVKTYLRRQWTKILSNRVSVQDFIFAKEVRLGTYSANAATIPPAAVVATKAMAVDPRAEPRYAERVPYVVVYGEPGARLVDLV 592
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G846_ECTSI1.340e-6292.98DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A6H5L0N9_9PHAE2.500e-6293.86DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A8J4F9P8_9CHLO1.800e-4166.96DNA polymerase (Fragment) n=2 Tax=Volvox TaxID=306... [more]
A0A0D2LUE3_9CHLO4.350e-4162.28DNA-directed DNA polymerase (Fragment) n=1 Tax=Mon... [more]
A0A7J7QK52_9CHLO6.650e-4167.83DNA polymerase zeta catalytic subunit n=1 Tax=Scen... [more]
A0A383VJ50_TETOB9.060e-4166.96DNA polymerase zeta catalytic subunit n=1 Tax=Tetr... [more]
A0A7S2T8Z2_9CHLO1.320e-4063.48DNA-directed DNA polymerase (Fragment) n=1 Tax=Chl... [more]
A8IZI8_CHLRE1.430e-4067.26DNA polymerase (Fragment) n=1 Tax=Chlamydomonas re... [more]
A0A835WRV5_9CHLO1.700e-4067.26DNA polymerase zeta catalytic subunit n=1 Tax=Chla... [more]
D8UAI7_VOLCA1.990e-4067.86DNA polymerase (Fragment) n=1 Tax=Volvox carteri f... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191163contigH-elongata_contig191163:276..1083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue2.3e-54
Seed eggNOG ortholog2880.D7G846
Preferred nameAHDC1
KEGG koko:K02350
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA polymerase activity
EggNOG OGsCOG0417@1,KOG0968@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930092.1447809-CDS-H-elongata_contig191163:275..4401622930092.1447809-CDS-H-elongata_contig191163:275..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191163 276..440 -
1691679277.15325-CDS-H-elongata_contig191163:275..4401691679277.15325-CDS-H-elongata_contig191163:275..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191163 276..440 -
1622930092.1632302-CDS-H-elongata_contig191163:903..10831622930092.1632302-CDS-H-elongata_contig191163:903..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191163 904..1083 -
1691679277.1647933-CDS-H-elongata_contig191163:903..10831691679277.1647933-CDS-H-elongata_contig191163:903..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191163 904..1083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191163.5281.1prot_H-elongata_contig191163.5281.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191163 276..1083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191163.5281.1

>prot_H-elongata_contig191163.5281.1 ID=prot_H-elongata_contig191163.5281.1|Name=mRNA_H-elongata_contig191163.5281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRA
AVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMASDPRAEPKYCERVPYV
VVAGPVGARLMDLVR
back to top

mRNA from alignment at H-elongata_contig191163:276..1083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191163.5281.1 ID=mRNA_H-elongata_contig191163.5281.1|Name=mRNA_H-elongata_contig191163.5281.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=808bp|location=Sequence derived from alignment at H-elongata_contig191163:276..1083- (Himanthalia elongata Himel1 dioecious)
CAGGGGATCGAGACGGTGCGGCGCGACGGGTGTCCCCTGGTGGTGAAGAT
ACTCGAGAAAGTTCTCCGAATGCTCTTCAACACGAAAGACCTGAGCCAGG
TGAAGGGGTACCTCTGCCGGCAGTGGACGAGGATCCTCACCGATCGGGCA
GCCGTCGGAGATTTTATCTTCGCCAAGGAGGTTTGTGAATGCTGCAACAG
AGGACGCTCATGGCTTCCGTTGGCTTGGCCTCTTTGACGATCAAGAGCAG
AGATAAGCGATCGATGGGCGCCGCGTTGCTTTTGCCGATGCCGTGCAGGC
TGTCCTCTCCCGCCGAAGCCTCCATTCGGTCGAGAGGCTCCTGGGTGGCA
AACACTACACGCTATAATAACCACCCTCAAGTGCGAAATTTTCGAGTTTC
GAATTCCGACAGCTGAAAGCGATTGCATCCCCGCAATCCCGTTCCCGCTC
GCTCTTATCTTCAAAGCAATACATATATTTTTATGTTTACGTTTATTGTA
TATGTTTTTCCCCCCACAACTGTTTCCTTAGGTCCACAGAGCTAACTCCT
ACAGGCACGTGGTTCACTTCAACCCCCCCACCCCTTCCCCTCCCCTAAAC
AAAATCTCATGAAACCGGCGTGAAACGGGAAATCAAAATTAAGGTTCGAC
TTGGGACGTACGCGAGCGACGTGTACATGCCGCCGTCCGCCATCGTGGCC
AGCAAGGCCATGGCAAGCGATCCTCGCGCCGAGCCGAAGTACTGCGAGCG
CGTGCCGTATGTTGTGGTTGCCGGGCCTGTGGGAGCGCGCCTGATGGATC
TGGTGAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig191163:276..1083-

>mRNA_H-elongata_contig191163.5281.1 ID=mRNA_H-elongata_contig191163.5281.1|Name=mRNA_H-elongata_contig191163.5281.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig191163:276..1083- (Himanthalia elongata Himel1 dioecious)
CAGGGGATCGAGACGGTGCGGCGCGACGGGTGTCCCCTGGTGGTGAAGAT
ACTCGAGAAAGTTCTCCGAATGCTCTTCAACACGAAAGACCTGAGCCAGG
TGAAGGGGTACCTCTGCCGGCAGTGGACGAGGATCCTCACCGATCGGGCA
GCCGTCGGAGATTTTATCTTCGCCAAGGAGCAGGGGATCGAGACGGTGCG
GCGCGACGGGTGTCCCCTGGTGGTGAAGATACTCGAGAAAGTTCTCCGAA
TGCTCTTCAACACGAAAGACCTGAGCCAGGTGAAGGGGTACCTCTGCCGG
CAGTGGACGAGGATCCTCACCGATCGGGCAGCCGTCGGAGATTTTATCTT
CGCCAAGGAGGTTCGACTTGGGACGTACGCGAGCGACGTGTACATGCCGC
CGTCCGCCATCGTGGCCAGCAAGGCCATGGCAAGCGATCCTCGCGCCGAG
CCGAAGTACTGCGAGCGCGTGCCGTATGTTGTGGTTGCCGGGCCTGTGGG
AGCGCGCCTGATGGATCTGGTGAGAGTTCGACTTGGGACGTACGCGAGCG
ACGTGTACATGCCGCCGTCCGCCATCGTGGCCAGCAAGGCCATGGCAAGC
GATCCTCGCGCCGAGCCGAAGTACTGCGAGCGCGTGCCGTATGTTGTGGT
TGCCGGGCCTGTGGGAGCGCGCCTGATGGATCTGGTGAGA
back to top