mRNA_H-elongata_contig191013.5279.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191013.5279.1
Unique NamemRNA_H-elongata_contig191013.5279.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191013.5279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191013contigH-elongata_contig191013:405..886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.8941624-CDS-H-elongata_contig191013:404..7431622930091.8941624-CDS-H-elongata_contig191013:404..743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191013 405..743 +
1691679277.062068-CDS-H-elongata_contig191013:404..7431691679277.062068-CDS-H-elongata_contig191013:404..743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191013 405..743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.9107528-UTR-H-elongata_contig191013:743..8861622930091.9107528-UTR-H-elongata_contig191013:743..886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig191013 744..886 +
1691679277.0752263-UTR-H-elongata_contig191013:743..8861691679277.0752263-UTR-H-elongata_contig191013:743..886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig191013 744..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191013.5279.1prot_H-elongata_contig191013.5279.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191013 405..743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191013.5279.1

>prot_H-elongata_contig191013.5279.1 ID=prot_H-elongata_contig191013.5279.1|Name=mRNA_H-elongata_contig191013.5279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
LLSDSGRPTEQVPARFDLNLPCLCSAIVNFRFACNEVLSAFGLPPGLEHA
WLDLNLPCFCSAAVNSRFSVLDCCVTPCAGLFLVHLFFLRLDCSEYMRAV
LDVTAVVTCLTL*
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mRNA from alignment at H-elongata_contig191013:405..886+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191013.5279.1 ID=mRNA_H-elongata_contig191013.5279.1|Name=mRNA_H-elongata_contig191013.5279.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=482bp|location=Sequence derived from alignment at H-elongata_contig191013:405..886+ (Himanthalia elongata Himel1 dioecious)
CTACTATCTGACTCTGGGCGTCCCACCGAGCAGGTGCCAGCCCGGTTTGA
TTTGAACCTGCCCTGTCTCTGTTCTGCGATCGTGAACTTTCGTTTCGCCT
GCAATGAAGTACTGTCTGCTTTTGGGCTTCCACCCGGACTGGAGCATGCC
TGGCTTGATTTGAACCTGCCTTGCTTCTGTTCTGCTGCTGTGAACTCTCG
TTTTTCTGTACTGGACTGTTGTGTAACCCCCTGCGCTGGGCTGTTTTTAG
TGCATCTGTTTTTCCTAAGGCTGGACTGTTCTGAATATATGAGGGCCGTG
TTGGATGTGACTGCTGTCGTGACGTGTCTAACACTCTGACCTCTCTGAAC
TCGGTTGTAGCGCTCTGCGGAAACATATCGTGATGCGTCTGACTGTAGAA
CCAACTTCGGGTATTTATGCAACCGCTACTGTTCACTCTCTCTCTCTCAC
CGTGGAACAGGTCCGGCGAGACTGACCCGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig191013:405..886+

>mRNA_H-elongata_contig191013.5279.1 ID=mRNA_H-elongata_contig191013.5279.1|Name=mRNA_H-elongata_contig191013.5279.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig191013:405..886+ (Himanthalia elongata Himel1 dioecious)
CTACTATCTGACTCTGGGCGTCCCACCGAGCAGGTGCCAGCCCGGTTTGA
TTTGAACCTGCCCTGTCTCTGTTCTGCGATCGTGAACTTTCGTTTCGCCT
GCAATGAAGTACTGTCTGCTTTTGGGCTTCCACCCGGACTGGAGCATGCC
TGGCTTGATTTGAACCTGCCTTGCTTCTGTTCTGCTGCTGTGAACTCTCG
TTTTTCTGTACTGGACTGTTGTGTAACCCCCTGCGCTGGGCTGTTTTTAG
TGCATCTGTTTTTCCTAAGGCTGGACTGTTCTGAATATATGAGGGCCGTG
TTGGATGTGACTGCTGTCGTGACGTGTCTAACACTCTGACTACTATCTGA
CTCTGGGCGTCCCACCGAGCAGGTGCCAGCCCGGTTTGATTTGAACCTGC
CCTGTCTCTGTTCTGCGATCGTGAACTTTCGTTTCGCCTGCAATGAAGTA
CTGTCTGCTTTTGGGCTTCCACCCGGACTGGAGCATGCCTGGCTTGATTT
GAACCTGCCTTGCTTCTGTTCTGCTGCTGTGAACTCTCGTTTTTCTGTAC
TGGACTGTTGTGTAACCCCCTGCGCTGGGCTGTTTTTAGTGCATCTGTTT
TTCCTAAGGCTGGACTGTTCTGAATATATGAGGGCCGTGTTGGATGTGAC
TGCTGTCGTGACGTGTCTAACACTCTGA
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