mRNA_H-elongata_contig19081.5272.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19081.5272.1
Unique NamemRNA_H-elongata_contig19081.5272.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19081.5272.1 vs. uniprot
Match: D7FHB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB4_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 1.300e-131
Identity = 188/242 (77.69%), Postives = 211/242 (87.19%), Query Frame = 1 
Query:    1 MTWITAHAPKPMENIWYESKELTIKLRGEAWQGGRGAFWPPFPTVESWFRIAGDIARQRDAPLLLSVLEFKRYALRIASASALMAYNPDDYRLLARSVYDLGVLARWTHGWSGRLSCYSSLWTPGNVGMALLGGLTLLAIRRNVASNDAVRCLLVGIASENIMARYMHDKVRAARTEELAKRYSRNQGKTCRGSGVKCVRLACEKLGLPRSSSQLDGAVAFAVGWAKEAVDGLPGNQKPRDG 726
            MTWITAH+PKPMENIWYESKEL + L   + Q  RGA WP FP +ESWFRIA DIARQRD+PLLLSV EFKR+ALRIAS+SAL+AYNP +Y  L  SVY+LG+LARWTHGWSGRLSCYS+LWTPGNVGMALLGGLTLL IR+NV + D+VRCLLVG+AS+ IM RY+ DKVRAART+ELA RYS N+GKTCRGSGVKCVR AC KLGLP S+SQLDGAVAFAVGWA EA++GLPGNQ PRDG
Sbjct:  145 MTWITAHSPKPMENIWYESKELMMTLHEISGQNARGAVWPSFPGIESWFRIAKDIARQRDSPLLLSVFEFKRFALRIASSSALLAYNPGEYDNLVTSVYNLGILARWTHGWSGRLSCYSALWTPGNVGMALLGGLTLLVIRKNVVT-DSVRCLLVGMASDTIMGRYLPDKVRAARTKELAYRYSNNKGKTCRGSGVKCVRKACVKLGLPPSASQLDGAVAFAVGWAMEAIEGLPGNQAPRDG 385
[Close]
BLAST of mRNA_H-elongata_contig19081.5272.1 vs. uniprot
Match: R7QMQ2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMQ2_CHOCR)

HSP 1 Score: 175 bits (443), Expect = 1.410e-48
Identity = 99/266 (37.22%), Postives = 144/266 (54.14%), Query Frame = 1 
Query:   13 TAHAPKPMENIWYESKELTIKLRGEAWQGGRGAFWPP--FPTVESWFRIAGDIARQRDAPLLLSVLEFKRYALRIASASALMAYNPDDYRLLARSVYDLGVLARWTHGWSGRLSCYSSLWTPGNVGMALLGGLTLLAIR--RNVASNDA-VRCLLVGIASENIMARYMHDKVRAARTEELAKRYSRNQGKTCRGSGVKCVRLACEKLGLPRSSSQLDGAVAFAVGWAKEAVDGLPGNQKPRDGNDHNQVEEIFCSSRAYRFTDERL 795
            T   P  M ++WY +         +A +  + + +    FP+  SW  IA D+      P+ LS      +A  +ASAS ++   P+ YR L   +Y+ G+ ARWT GWSG L+C++ LWT   + +A+L GL+LLA+   + V   D  VR +L G A+  +  R +  ++   R  EL +RY+   GKTCRGSGV   RLAC  L +P  +S +DG  AFA GWA E ++  PGNQKP  G  H+ VE    SS A+R+    +
Sbjct:  155 TRFPPNRMSSLWYTTARFEELYEEKAQEVRKMSEFRDVLFPSWTSWLNIAQDVGTHLSRPVYLSDSYLINFAGELASASLIVVRYPEKYRKLVDQIYEDGLDARWTFGWSGLLACFTQLWTKERIHIAMLNGLSLLALNSGQEVEHIDPNVRSMLYGYAAFAVSTRAVGKRIAEDRKVELLRRYTTESGKTCRGSGVCATRLACSILKIPAEASHMDGLPAFATGWASEYMEFKPGNQKPEHGESHDDVEMKHGSSNAWRYPHSHI 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19081.5272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHB4_ECTSI1.300e-13177.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
R7QMQ2_CHOCR1.410e-4837.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19081contigH-elongata_contig19081:3374..4171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size798
Cds size798
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.3814223-CDS-H-elongata_contig19081:3373..41711622930091.3814223-CDS-H-elongata_contig19081:3373..4171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19081 3374..4171 -
1691679276.902078-CDS-H-elongata_contig19081:3373..41711691679276.902078-CDS-H-elongata_contig19081:3373..4171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19081 3374..4171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19081.5272.1prot_H-elongata_contig19081.5272.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19081 3374..4171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19081.5272.1

>prot_H-elongata_contig19081.5272.1 ID=prot_H-elongata_contig19081.5272.1|Name=mRNA_H-elongata_contig19081.5272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
MTWITAHAPKPMENIWYESKELTIKLRGEAWQGGRGAFWPPFPTVESWFR
IAGDIARQRDAPLLLSVLEFKRYALRIASASALMAYNPDDYRLLARSVYD
LGVLARWTHGWSGRLSCYSSLWTPGNVGMALLGGLTLLAIRRNVASNDAV
RCLLVGIASENIMARYMHDKVRAARTEELAKRYSRNQGKTCRGSGVKCVR
LACEKLGLPRSSSQLDGAVAFAVGWAKEAVDGLPGNQKPRDGNDHNQVEE
IFCSSRAYRFTDERL*
back to top

mRNA from alignment at H-elongata_contig19081:3374..4171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19081.5272.1 ID=mRNA_H-elongata_contig19081.5272.1|Name=mRNA_H-elongata_contig19081.5272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=798bp|location=Sequence derived from alignment at H-elongata_contig19081:3374..4171- (Himanthalia elongata Himel1 dioecious)
ATGACCTGGATCACGGCGCACGCTCCCAAGCCCATGGAGAACATATGGTA
CGAATCGAAGGAACTTACGATAAAGCTGCGAGGCGAAGCTTGGCAGGGCG
GCAGGGGAGCATTCTGGCCACCTTTCCCCACCGTGGAGAGCTGGTTTCGC
ATCGCGGGCGATATTGCCCGTCAGCGGGATGCGCCGCTGTTGCTGAGCGT
TCTCGAGTTCAAGCGGTACGCCCTGCGCATCGCGTCAGCCTCCGCTCTGA
TGGCCTACAACCCCGACGATTACAGGCTGTTGGCGAGGTCGGTCTACGAC
CTCGGGGTCTTAGCGAGATGGACCCACGGGTGGTCTGGGCGCCTCTCGTG
CTACTCGTCCCTGTGGACGCCGGGCAACGTCGGCATGGCGCTCCTCGGGG
GCCTGACACTGCTCGCAATCCGGAGAAACGTTGCAAGCAACGACGCGGTC
CGTTGTCTCCTCGTGGGCATCGCCTCAGAGAATATAATGGCACGATACAT
GCACGATAAGGTCCGCGCCGCCCGAACTGAAGAGCTTGCCAAGCGGTACT
CTCGTAACCAAGGCAAGACGTGCCGCGGTAGCGGCGTCAAGTGCGTGCGC
CTGGCGTGCGAGAAGCTCGGGCTTCCTCGGTCGTCCAGTCAGCTTGACGG
CGCCGTGGCGTTTGCGGTAGGGTGGGCAAAAGAGGCCGTCGACGGCCTAC
CCGGGAACCAGAAGCCCAGGGATGGCAATGATCATAATCAGGTCGAGGAG
ATCTTCTGCTCTAGCCGAGCTTACCGTTTCACGGATGAGAGGCTTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19081:3374..4171-

>mRNA_H-elongata_contig19081.5272.1 ID=mRNA_H-elongata_contig19081.5272.1|Name=mRNA_H-elongata_contig19081.5272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig19081:3374..4171- (Himanthalia elongata Himel1 dioecious)
ATGACCTGGATCACGGCGCACGCTCCCAAGCCCATGGAGAACATATGGTA
CGAATCGAAGGAACTTACGATAAAGCTGCGAGGCGAAGCTTGGCAGGGCG
GCAGGGGAGCATTCTGGCCACCTTTCCCCACCGTGGAGAGCTGGTTTCGC
ATCGCGGGCGATATTGCCCGTCAGCGGGATGCGCCGCTGTTGCTGAGCGT
TCTCGAGTTCAAGCGGTACGCCCTGCGCATCGCGTCAGCCTCCGCTCTGA
TGGCCTACAACCCCGACGATTACAGGCTGTTGGCGAGGTCGGTCTACGAC
CTCGGGGTCTTAGCGAGATGGACCCACGGGTGGTCTGGGCGCCTCTCGTG
CTACTCGTCCCTGTGGACGCCGGGCAACGTCGGCATGGCGCTCCTCGGGG
GCCTGACACTGCTCGCAATCCGGAGAAACGTTGCAAGCAACGACGCGGTC
CGTTGTCTCCTCGTGGGCATCGCCTCAGAGAATATAATGGCACGATACAT
GCACGATAAGGTCCGCGCCGCCCGAACTGAAGAGCTTGCCAAGCGGTACT
CTCGTAACCAAGGCAAGACGTGCCGCGGTAGCGGCGTCAAGTGCGTGCGC
CTGGCGTGCGAGAAGCTCGGGCTTCCTCGGTCGTCCAGTCAGCTTGACGG
CGCCGTGGCGTTTGCGGTAGGGTGGGCAAAAGAGGCCGTCGACGGCCTAC
CCGGGAACCAGAAGCCCAGGGATGGCAATGATCATAATCAGGTCGAGGAG
ATCTTCTGCTCTAGCCGAGCTTACCGTTTCACGGATGAGAGGCTTTAGAT
GACCTGGATCACGGCGCACGCTCCCAAGCCCATGGAGAACATATGGTACG
AATCGAAGGAACTTACGATAAAGCTGCGAGGCGAAGCTTGGCAGGGCGGC
AGGGGAGCATTCTGGCCACCTTTCCCCACCGTGGAGAGCTGGTTTCGCAT
CGCGGGCGATATTGCCCGTCAGCGGGATGCGCCGCTGTTGCTGAGCGTTC
TCGAGTTCAAGCGGTACGCCCTGCGCATCGCGTCAGCCTCCGCTCTGATG
GCCTACAACCCCGACGATTACAGGCTGTTGGCGAGGTCGGTCTACGACCT
CGGGGTCTTAGCGAGATGGACCCACGGGTGGTCTGGGCGCCTCTCGTGCT
ACTCGTCCCTGTGGACGCCGGGCAACGTCGGCATGGCGCTCCTCGGGGGC
CTGACACTGCTCGCAATCCGGAGAAACGTTGCAAGCAACGACGCGGTCCG
TTGTCTCCTCGTGGGCATCGCCTCAGAGAATATAATGGCACGATACATGC
ACGATAAGGTCCGCGCCGCCCGAACTGAAGAGCTTGCCAAGCGGTACTCT
CGTAACCAAGGCAAGACGTGCCGCGGTAGCGGCGTCAAGTGCGTGCGCCT
GGCGTGCGAGAAGCTCGGGCTTCCTCGGTCGTCCAGTCAGCTTGACGGCG
CCGTGGCGTTTGCGGTAGGGTGGGCAAAAGAGGCCGTCGACGGCCTACCC
GGGAACCAGAAGCCCAGGGATGGCAATGATCATAATCAGGTCGAGGAGAT
CTTCTGCTCTAGCCGAGCTTACCGTTTCACGGATGAGAGGCTTTAG
back to top