mRNA_H-elongata_contig190800.5269.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190800.5269.1
Unique NamemRNA_H-elongata_contig190800.5269.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: D7FVN4_ECTSI (Myo-inositol dehydrogenase myo-inositol dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN4_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.420e-30
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVRWE 186
            DMPYDFFMSRYKEAY+QETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAG SA+E RWV ++
Sbjct:  357 DMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEEKRWVSFD 418
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BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: A0A836CJ29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ29_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.510e-27
Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVRWE 186
            DMPYDFFMSRYKEAYVQETLAFC  LV+D PSPCSGEDGLMALIM++AAG+SA++GRWV ++
Sbjct:  276 DMPYDFFMSRYKEAYVQETLAFCKALVHDLPSPCSGEDGLMALIMSVAAGMSAEQGRWVSFD 337
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BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: F0Y3X5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3X5_AURAN)

HSP 1 Score: 108 bits (271), Expect = 8.060e-27
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVRWE 186
            D+PYDFFMSRYKEAY QETLAF D LVNDKPSPCSGEDGL+ALIM+IAAGISA+E RWV++ 
Sbjct:  276 DLPYDFFMSRYKEAYKQETLAFIDALVNDKPSPCSGEDGLIALIMSIAAGISAEEQRWVKFS 337
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BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: A0A6V1RSK2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RSK2_HETAK)

HSP 1 Score: 107 bits (267), Expect = 5.830e-26
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVRWE 186
            DMP+DFFMSRYKEAY+QET AF DCL ND PSPC+GEDGL+ALIMAIAAG SA EGRWV++ 
Sbjct:  336 DMPFDFFMSRYKEAYIQETKAFVDCLANDTPSPCTGEDGLIALIMAIAAGKSAAEGRWVKFS 397
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BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: A0A7S0EYW3_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EYW3_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 6.740e-26
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVRWE 186
            DMP+DFFMSRYKEAYV ETLAF D LVNDKPSPCSGEDGL+AL+MA AAGIS+ E RWV++ 
Sbjct:  168 DMPFDFFMSRYKEAYVLETLAFVDSLVNDKPSPCSGEDGLIALVMATAAGISSTEKRWVKFS 229
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BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: A0A835Z5H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.360e-25
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVRWE 186
            DMP+DFFMSRYKEAY+QETLAFC  LV D PSPCSGEDGLMALIM++AAG+SA++ RWV + 
Sbjct:  287 DMPFDFFMSRYKEAYIQETLAFCKALVEDLPSPCSGEDGLMALIMSVAAGMSAEQNRWVEFS 348
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BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: A0A7S2R4A5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4A5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.930e-25
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVRWE 186
            DMPYDFFMSRYKEAY++ET AFC  LVND+PSPC+GEDGL ALIMA+AAG SA+EGRWV++ 
Sbjct:  333 DMPYDFFMSRYKEAYLRETEAFCKALVNDEPSPCTGEDGLFALIMALAAGKSAEEGRWVKFS 394
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BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: A0A7S2CX38_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CX38_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 2.380e-25
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVR 180
            DMPYDFFMSRYKEAYVQETLAF + LVND+PSPC+G DGL+AL+MAIAAG SA+EGRWV+
Sbjct:  322 DMPYDFFMSRYKEAYVQETLAFVEALVNDEPSPCTGIDGLIALVMAIAAGKSAEEGRWVK 381
[Close]
BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: A0A7S4EZX5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZX5_CHRCT)

HSP 1 Score: 105 bits (261), Expect = 5.030e-25
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVRWE 186
            DMPYDFFMSRYKEAY QET+AF D LVND P+PCSG DGL+ALIMAIAAGISA+E RWV+++
Sbjct:  302 DMPYDFFMSRYKEAYKQETMAFVDSLVNDTPAPCSGRDGLVALIMAIAAGISAEERRWVQFD 363
[Close]
BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Match: A0A8J2SP02_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP02_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.080e-25
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 DMPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGISAKEGRWVR 180
            D+PYDFFMSRYKEAY QETLAF D LVNDKPSPCSGEDGL+ALIMAI AG SA E RWV+
Sbjct:  312 DLPYDFFMSRYKEAYKQETLAFVDALVNDKPSPCSGEDGLVALIMAITAGKSAAEQRWVK 371
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190800.5269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN4_ECTSI3.420e-3088.71Myo-inositol dehydrogenase myo-inositol dehydrogen... [more]
A0A836CJ29_9STRA1.510e-2780.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0Y3X5_AURAN8.060e-2782.26Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6V1RSK2_HETAK5.830e-2679.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0EYW3_9EUKA6.740e-2679.03Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A835Z5H5_9STRA1.360e-2575.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R4A5_9STRA1.930e-2577.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CX38_9EUKA2.380e-2581.67Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4EZX5_CHRCT5.030e-2579.03Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A8J2SP02_9STRA6.080e-2583.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190800contigH-elongata_contig190800:2..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog2880.D7FVN4
EggNOG free text desc.D-xylose 1-dehydrogenase (NADP ) activity
EggNOG OGsCOG0673@1,KOG2741@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMyo-inositol dehydrogenase myo-inositol dehydrogenase
Ec32 orthologEc-01_006070.1
Exons2
Model size189
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190800.5269.1prot_H-elongata_contig190800.5269.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190800 5..471 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.1657352-UTR-H-elongata_contig190800:1..41622930091.1657352-UTR-H-elongata_contig190800:1..4Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig190800 2..4 +
1691679276.8323612-UTR-H-elongata_contig190800:1..41691679276.8323612-UTR-H-elongata_contig190800:1..4Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig190800 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.1903248-CDS-H-elongata_contig190800:4..401622930091.1903248-CDS-H-elongata_contig190800:4..40Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190800 5..40 +
1691679276.8435857-CDS-H-elongata_contig190800:4..401691679276.8435857-CDS-H-elongata_contig190800:4..40Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190800 5..40 +
1622930091.2057602-CDS-H-elongata_contig190800:321..4711622930091.2057602-CDS-H-elongata_contig190800:321..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190800 322..471 +
1691679276.8530426-CDS-H-elongata_contig190800:321..4711691679276.8530426-CDS-H-elongata_contig190800:321..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190800 322..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190800.5269.1

>prot_H-elongata_contig190800.5269.1 ID=prot_H-elongata_contig190800.5269.1|Name=mRNA_H-elongata_contig190800.5269.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MPYDFFMSRYKEAYVQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGI
SAKEGRWVRWE*
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mRNA from alignment at H-elongata_contig190800:2..471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190800.5269.1 ID=mRNA_H-elongata_contig190800.5269.1|Name=mRNA_H-elongata_contig190800.5269.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=470bp|location=Sequence derived from alignment at H-elongata_contig190800:2..471+ (Himanthalia elongata Himel1 dioecious)
GACATGCCGTACGACTTTTTCATGAGCCGTTACAAAGAGGTAAGCAAGCC
GGGAGAGGGTCGCCCCCCCCCCCTCCATCCCAGCCCCCACCCGTGGTGCA
CTCCACTGCCTCTCGCCGCGCGTGCGTAGCCACAGGGCAGCCGAACTCTT
GAGGAAGGCTTTCTGTGGGTGTAAATCTGTTGAAGAACCTCGTCATCGAG
TTACCGTGTCGTATCGCGTGGCGAGACCCCATCGATCCGTCTTGTCTTTA
GTGAAATCTCACCGCGCGATTTTGTATGAAGCCCTGTTTGTTTTGATCGT
CCGTTCGTTCGTGGGGCCAGGCATATGTCCAGGAGACGCTTGCCTTCTGC
GACTGCCTGGTAAATGACAAGCCCTCGCCGTGCTCTGGGGAGGACGGACT
GATGGCCCTCATCATGGCTATCGCCGCGGGCATATCGGCGAAGGAGGGGC
GTTGGGTCAGGTGGGAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig190800:2..471+

>mRNA_H-elongata_contig190800.5269.1 ID=mRNA_H-elongata_contig190800.5269.1|Name=mRNA_H-elongata_contig190800.5269.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig190800:2..471+ (Himanthalia elongata Himel1 dioecious)
ATGCCGTACGACTTTTTCATGAGCCGTTACAAAGAGATGCCGTACGACTT
TTTCATGAGCCGTTACAAAGAGGCATATGTCCAGGAGACGCTTGCCTTCT
GCGACTGCCTGGTAAATGACAAGCCCTCGCCGTGCTCTGGGGAGGACGGA
CTGATGGCCCTCATCATGGCTATCGCCGCGGGCATATCGGCGAAGGAGGG
GCGTTGGGTCAGGTGGGAATGAGCATATGTCCAGGAGACGCTTGCCTTCT
GCGACTGCCTGGTAAATGACAAGCCCTCGCCGTGCTCTGGGGAGGACGGA
CTGATGGCCCTCATCATGGCTATCGCCGCGGGCATATCGGCGAAGGAGGG
GCGTTGGGTCAGGTGGGAATGA
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