mRNA_H-elongata_contig19066.5266.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19066.5266.1
Unique NamemRNA_H-elongata_contig19066.5266.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 1.810e-109
Identity = 160/261 (61.30%), Postives = 200/261 (76.63%), Query Frame = 1
Query:    1 MSDMGDVSRTLGMNVTRDREKGTITISQKDYTEDVVQRYSMKSCNAAYTPRVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIHY 783
            M+D+G+ S  LGM + RDRE  T+TISQ+ Y + +++R+ M       TP  G E+S  QPE+ LL+E+E R+Y+ I G++MY+AQV RYDI+Y   QLAR M+KP+K HM AAKH LRYLAG+ DF ITYK+GGF++A FSD+NW NNPDN +STSS + MLANAP+SF+  LQGLTA S MEAELVA AL MKEAVFCSNM+ ELGF K F  +P+Y DNT+ LH   NR++S R KHIALR+FF+RELV EGKISIHY
Sbjct:  145 MTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHY 405          
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 2.390e-106
Identity = 160/262 (61.07%), Postives = 201/262 (76.72%), Query Frame = 1
Query:    1 MSDMGDVSRTLGMNVTRDREKGTITISQKDYTEDVVQRYSMKSCNAAYTPRVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIHYV 786
            M+D+G+ S  LGM + RDRE  T+TISQ+ Y + +++R+ M       TP  G E+S  QPE+ LL+E+E R+Y+ I G++MY+AQV RYDI+Y   QLAR+M+KP+K HM AAKH LRYLAG+ DF ITYK+GGF++A FSD+NW NNPDN +STSS + MLANAP+SF+  LQGLTA S MEAELVA AL MKEAVFCSNM+ ELG  K F  +P+Y DNT+ LH   NR++S R KHIALR+FF+RELV EGKISIHYV
Sbjct:  366 MTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYV 627          
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 4.940e-103
Identity = 160/262 (61.07%), Postives = 200/262 (76.34%), Query Frame = 1
Query:    1 MSDMGDVSRTLGMNVTRDREKGTITISQKDYTEDVVQRYSMKSCNAAYTPRVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIHYV 786
            M+D+G+ S  L M + RDRE  T+TISQ+ Y + +++R+ M       TP  G E+S  QPE+ LL+E+E R+Y+ I G++MY+AQV RYDI+Y   QLAR M+KP+K HM AAKH LRYLAG+ DF ITYK+GGF++A FSD+NW NNPDN +STSS + MLANAP+SF+  LQGLTA S MEAELVA AL MKEAVFCSNM+ ELGF K F  +P+Y DNT+ LH   NR++S R KHIALR+FF+RELV EGKISIHYV
Sbjct:  705 MTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYV 966          
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 324 bits (831), Expect = 3.110e-98
Identity = 157/262 (59.92%), Postives = 199/262 (75.95%), Query Frame = 1
Query:    1 MSDMGDVSRTLGMNVTRDREKGTITISQKDYTEDVVQRYSMKSCNAAYTPRVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIHYV 786
            M+D+G+ S  LGM + RDRE  T+TISQ+ Y + +++R+ +       TP  G E+S  QPE+ LL+E+E R+Y+ I G++MY+AQV RYDI+Y   QLAR M+KP+K HM AAKH LRYLAG+ DF ITYK+GGF++A FSD+NW NNPDN +STSS + +LANAP+SF+  LQGLTA S MEAELVA AL M EAVF SNM+ ELGF K F  +P+Y DNT+ LH   NR++S R KHIALR+FF+RELV EGKISIHYV
Sbjct: 1374 MTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYV 1635          
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 2.010e-96
Identity = 147/251 (58.57%), Postives = 190/251 (75.70%), Query Frame = 1
Query:   34 GMNVTRDREKGTITISQKDYTEDVVQRYSMKSCNAAYTPRVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIHYV 786
            GM + RDRE+GT++IS++ Y++ ++ R+ M +C    TP +GP  S  QPEE LLN+EE RRY+ I G ++YL+Q+ RYDI+Y  +QLAR M+KP+K HMGAAK   RYLAG+  F I YK+GGF++ AF+D+NWGNNPDN +STSS + ML +AP++FK  LQ LT QS ME ELVA AL +KEAVFCSN++ ELGF K    VPLY DNT+ LH   NR+YS   KHIALR+FF+RELV EG+I+IHYV
Sbjct:  439 GMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYV 689          
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 1.020e-87
Identity = 148/260 (56.92%), Postives = 179/260 (68.85%), Query Frame = 1
Query:    1 MSDMGDVSRTLGMNVTRDREKGTITISQKDYTEDVVQRYSMKSCNAAYTPRVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIH 780
            MS +G+VS  LGM VTRD E GT+TI+Q DYT  ++ R+ M+ C     P VG ELS  QP E +LN+E+                        T +QLAR MSK  KAHMGAAKHLLR   G+ DF ITYK+GGF++ AFSDANW +NPDN RSTSS ++M++ AP+SFK  LQ LT  S MEAEL+A ALTMKEAVFCSNM+ ELGF + FG VPLYI+NT+ LHV  N+ YS R KHIAL +F VRELV+EG I+IH
Sbjct:  268 MSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEK------------------------TQSQLARVMSKAAKAHMGAAKHLLR---GTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500          
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 3.950e-87
Identity = 139/233 (59.66%), Postives = 178/233 (76.39%), Query Frame = 1
Query:   88 DYTEDVVQRYSMKSCNAAYTPRVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIHYV 786
            +YT  ++ R+ M SC    T   GPELS+ QPEE LLN E K+RY+AI G+VMYLAQVTRYDI+Y  +Q ARAMS P+K HMGAAKHLLRYL+GS DF ITYK+GGF + A S+AN G+N DN +S SS I+M++ AP S K  LQ LTA S +EAELVA AL MKE +FC+NM+ ELGF   F S PL+ID+T+ L+V  N+T+S   KH+ALR+F++R++V+EG+ISIHY+
Sbjct:  515 NYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYI 747          
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 1.330e-84
Identity = 131/261 (50.19%), Postives = 183/261 (70.11%), Query Frame = 1
Query:    1 MSDMGDVSRTLGMNVTRDREKGTITISQKDYTEDVVQRYSMKSCNAAYTPRVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIHY 783
            M+DMG+V R +G+ V RD E GT+ ISQ  Y  D++QRY M+  N   TP  G ELS  QP+++LL  EEK+R++ ITG+++YLAQ TRYD+ Y V+QL RA + P + HM AAKHLLRYL G+ D  I YK+G FR++ F+D+++G NPDN RST+  +  L    IS+  + Q L AQ+ +EAEL A + + +EAV+ SN + E+GF K+F SVP+  D+T AL VA N  +S R KHIALR+FF+REL +  +I++H+
Sbjct:    6 MTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHH 265          
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 1.120e-81
Identity = 139/243 (57.20%), Postives = 174/243 (71.60%), Query Frame = 1
Query:   58 EKGTITISQKDYTEDVVQRYSMKSCNAAYTPRVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIHYV 786
            E G +T SQ++Y   ++ R+ M S     T   GPELS                  AI G+V+YLAQ+TRYDI+Y  +QLARAMS P+K HMGAAKHLLRYL+GS DF ITYK+GGF + A SDANWGNNPDN +S SS I+M++ AP+SFK  LQ LTA S +EAELVA AL MKE +FC+NM+ ELGF   F S PLYI NT+ LHV  N+T+S R KH+ALR+F++RE+V+EG+ISIHY+
Sbjct:  436 EDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELS------------------AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYI 659          
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 5.900e-81
Identity = 121/180 (67.22%), Postives = 142/180 (78.89%), Query Frame = 1
Query:  244 MYLAQVTRYDILYTVNQLARAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNPDNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFCSNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRELVEEGKISIHY 783
            MY+AQV RYDI+Y    LAR M+KP+K H   AK  LRYLAG+ DF ITYK+GGF++A FSD+NW NNPDN +STSS + MLANAP+SF+  LQGLTA S MEAELVA AL MKEAVFCSNM+ ELGF K F  +P+Y DNT+ LH   NR++S R KHIALR+FF+RELV EGKISIHY
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHY 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19066.5266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE1.810e-10961.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE2.390e-10661.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE4.940e-10361.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE3.110e-9859.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE2.010e-9658.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J6N1_9PHAE1.020e-8756.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6R7_9PHAE3.950e-8759.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC04_9PHAE1.330e-8450.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE1.120e-8157.20CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMK0_9PHAE5.900e-8167.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19066contigH-elongata_contig19066:3889..4674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score164.9
Seed ortholog evalue5.2e-38
Seed eggNOG ortholog202698.XP_007378181.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size786
Cds size786
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930090.8531895-CDS-H-elongata_contig19066:3888..46741622930090.8531895-CDS-H-elongata_contig19066:3888..4674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19066 3889..4674 -
1691679276.6815832-CDS-H-elongata_contig19066:3888..46741691679276.6815832-CDS-H-elongata_contig19066:3888..4674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19066 3889..4674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19066.5266.1prot_H-elongata_contig19066.5266.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19066 3889..4674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19066.5266.1

>prot_H-elongata_contig19066.5266.1 ID=prot_H-elongata_contig19066.5266.1|Name=mRNA_H-elongata_contig19066.5266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp
MSDMGDVSRTLGMNVTRDREKGTITISQKDYTEDVVQRYSMKSCNAAYTP
RVGPELSLNQPEEKLLNEEEKRRYRAITGAVMYLAQVTRYDILYTVNQLA
RAMSKPTKAHMGAAKHLLRYLAGSADFFITYKQGGFRVAAFSDANWGNNP
DNDRSTSSCIVMLANAPISFKVRLQGLTAQSAMEAELVAEALTMKEAVFC
SNMILELGFDKSFGSVPLYIDNTSALHVACNRTYSPRAKHIALRYFFVRE
LVEEGKISIHYV
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mRNA from alignment at H-elongata_contig19066:3889..4674-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19066.5266.1 ID=mRNA_H-elongata_contig19066.5266.1|Name=mRNA_H-elongata_contig19066.5266.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=786bp|location=Sequence derived from alignment at H-elongata_contig19066:3889..4674- (Himanthalia elongata Himel1 dioecious)
ATGTCCGACATGGGCGACGTGTCGAGAACTCTCGGCATGAACGTCACCCG CGACCGTGAGAAGGGGACTATCACCATTAGTCAGAAGGATTACACGGAAG ACGTGGTGCAGCGCTACAGTATGAAAAGCTGCAACGCCGCGTACACCCCC AGAGTAGGGCCGGAGCTGTCTCTAAACCAACCGGAGGAGAAGCTGCTGAA CGAGGAGGAGAAGCGGCGCTACCGGGCAATCACTGGAGCCGTGATGTACC TTGCACAGGTCACCCGCTACGACATTCTCTACACGGTCAATCAGCTTGCA AGGGCCATGTCCAAGCCCACAAAAGCTCACATGGGGGCGGCCAAGCACCT GCTTCGCTACTTGGCCGGATCCGCAGATTTCTTCATCACCTACAAGCAAG GCGGTTTTAGAGTTGCTGCCTTCTCAGATGCCAACTGGGGCAACAACCCA GACAACGACAGATCTACGTCATCGTGCATCGTGATGCTGGCCAACGCCCC GATCAGCTTCAAAGTGAGACTGCAGGGACTGACCGCACAGTCCGCGATGG AGGCAGAGCTCGTGGCGGAAGCTCTGACAATGAAGGAGGCGGTGTTCTGC TCCAACATGATTCTGGAGCTTGGCTTCGATAAGAGCTTCGGTAGCGTGCC GCTGTACATCGACAACACGTCGGCACTGCACGTCGCCTGCAACCGCACCT ACAGCCCTCGTGCAAAGCACATTGCGCTAAGGTATTTTTTCGTGCGAGAG CTGGTAGAGGAGGGCAAGATCAGCATCCACTACGTC
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Coding sequence (CDS) from alignment at H-elongata_contig19066:3889..4674-

>mRNA_H-elongata_contig19066.5266.1 ID=mRNA_H-elongata_contig19066.5266.1|Name=mRNA_H-elongata_contig19066.5266.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at H-elongata_contig19066:3889..4674- (Himanthalia elongata Himel1 dioecious)
ATGTCCGACATGGGCGACGTGTCGAGAACTCTCGGCATGAACGTCACCCG
CGACCGTGAGAAGGGGACTATCACCATTAGTCAGAAGGATTACACGGAAG
ACGTGGTGCAGCGCTACAGTATGAAAAGCTGCAACGCCGCGTACACCCCC
AGAGTAGGGCCGGAGCTGTCTCTAAACCAACCGGAGGAGAAGCTGCTGAA
CGAGGAGGAGAAGCGGCGCTACCGGGCAATCACTGGAGCCGTGATGTACC
TTGCACAGGTCACCCGCTACGACATTCTCTACACGGTCAATCAGCTTGCA
AGGGCCATGTCCAAGCCCACAAAAGCTCACATGGGGGCGGCCAAGCACCT
GCTTCGCTACTTGGCCGGATCCGCAGATTTCTTCATCACCTACAAGCAAG
GCGGTTTTAGAGTTGCTGCCTTCTCAGATGCCAACTGGGGCAACAACCCA
GACAACGACAGATCTACGTCATCGTGCATCGTGATGCTGGCCAACGCCCC
GATCAGCTTCAAAGTGAGACTGCAGGGACTGACCGCACAGTCCGCGATGG
AGGCAGAGCTCGTGGCGGAAGCTCTGACAATGAAGGAGGCGGTGTTCTGC
TCCAACATGATTCTGGAGCTTGGCTTCGATAAGAGCTTCGGTAGCGTGCC
GCTGTACATCGACAACACGTCGGCACTGCACGTCGCCTGCAACCGCACCT
ACAGCCCTCGTGCAAAGCACATTGCGCTAAGGTATTTTTTCGTGCGAGAG
CTGGTAGAGGAGGGCAAGATCAGCATCCACTACGTCATGTCCGACATGGG
CGACGTGTCGAGAACTCTCGGCATGAACGTCACCCGCGACCGTGAGAAGG
GGACTATCACCATTAGTCAGAAGGATTACACGGAAGACGTGGTGCAGCGC
TACAGTATGAAAAGCTGCAACGCCGCGTACACCCCCAGAGTAGGGCCGGA
GCTGTCTCTAAACCAACCGGAGGAGAAGCTGCTGAACGAGGAGGAGAAGC
GGCGCTACCGGGCAATCACTGGAGCCGTGATGTACCTTGCACAGGTCACC
CGCTACGACATTCTCTACACGGTCAATCAGCTTGCAAGGGCCATGTCCAA
GCCCACAAAAGCTCACATGGGGGCGGCCAAGCACCTGCTTCGCTACTTGG
CCGGATCCGCAGATTTCTTCATCACCTACAAGCAAGGCGGTTTTAGAGTT
GCTGCCTTCTCAGATGCCAACTGGGGCAACAACCCAGACAACGACAGATC
TACGTCATCGTGCATCGTGATGCTGGCCAACGCCCCGATCAGCTTCAAAG
TGAGACTGCAGGGACTGACCGCACAGTCCGCGATGGAGGCAGAGCTCGTG
GCGGAAGCTCTGACAATGAAGGAGGCGGTGTTCTGCTCCAACATGATTCT
GGAGCTTGGCTTCGATAAGAGCTTCGGTAGCGTGCCGCTGTACATCGACA
ACACGTCGGCACTGCACGTCGCCTGCAACCGCACCTACAGCCCTCGTGCA
AAGCACATTGCGCTAAGGTATTTTTTCGTGCGAGAGCTGGTAGAGGAGGG
CAAGATCAGCATCCACTACGTC
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