mRNA_H-elongata_contig19065.5265.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19065.5265.1
Unique NamemRNA_H-elongata_contig19065.5265.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LS86_ECTSI (PARP catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS86_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 5.260e-123
Identity = 187/302 (61.92%), Postives = 220/302 (72.85%), Query Frame = 2
Query:    2 RAAWVEEDTGHLFLYCGTRCAHAAGSPDFVGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPSLERWVGQ---ALNYDEVVVFREEAALP 898
            RAAWV+E TG +  YCG+RCA   G    VG G CSLPGCV  N ++P  ++E GYCCE HRL ATQRSLGP  EPFVDRTFRGGTTSA DF+LS+L   HP Y S K+QF+Q W KP    GVSV+RI K+++P+ +RR+ E     V NV RRFHGTSCS +CTFFVDL+ GPCGES C VC+ICTHGFQL+DNVG TAR+T  +LRYG GLYFSS+SGKANDYA  SEK +RSG  VRCMF++SV VG+AF T E   L P   P     P  +  VG+   ALNY EVVV++EEAALP
Sbjct:  170 RAAWVDEGTGGVLDYCGSRCAGEVGMNYLVGVGVCSLPGCVNPNFVHPRDRQETGYCCEDHRLRATQRSLGPNPEPFVDRTFRGGTTSADDFQLSVLTNRHPEYLSRKQQFMQKWEKPLVGTGVSVLRIFKVQVPKDIRRRTETCMGQVGNVQRRFHGTSCSNVCTFFVDLRGGPCGESTCKVCNICTHGFQLRDNVGDTARRTNFDLRYGDGLYFSSVSGKANDYAELSEKTDRSGKKVRCMFLSSVTVGRAFITYEG-KLPPEQCP----PPGFDSVVGEKGPALNYPEVVVYKEEAALP 466          
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LS87_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS87_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 4.270e-91
Identity = 149/297 (50.17%), Postives = 192/297 (64.65%), Query Frame = 2
Query:    8 AWVEEDTGHLFLYCGTRCAHAAGSPDFVGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPSLERWVGQALNYDEVVVFREEAALP 898
            AW+    G    YC +RCA   G         C L GC  + + +  T   + YC E HR+   Q++LG   + +V+R F  GTT  TDF+L +L K HP+Y S+ +QF+  WVKPEPVGG+SV +IL +++P  VRR+ + Y + V NV RRFHGTSCS  C FFVDL+  PC +  C VCSICTHGF L+ NVG TAR+T   LRYG GLYFSS+SGKANDYA  SEK + +G  +RCMF+A+VA GKAF+T E+  L     P      S+   VGQ LNYDE+VV+++EAALP
Sbjct:  154 AWLANIEGPQ--YCSSRCAIDDGGQKAGSSRSCKLAGCSEVALYHHQTGNALDYCGEDHRVRNEQQTLGTNGDTYVERIFHRGTTGTTDFKLCVLSKAHPHYPSLIDQFVNKWVKPEPVGGISVEKILTVEVPADVRRKTKTYEKTVGNVRRRFHGTSCSTKCNFFVDLRGNPCSDKGCKVCSICTHGFTLQGNVGGTARRTNFGLRYGEGLYFSSVSGKANDYADFSEKTDSNGRRLRCMFVANVAAGKAFKTHET-SLQQNECPP-AGYDSVVGEVGQGLNYDELVVYKDEAALP 446          
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LSB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB5_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 2.740e-80
Identity = 123/233 (52.79%), Postives = 167/233 (71.67%), Query Frame = 2
Query:    2 RAAWVEEDTGHLFLYCGTRCAHAAGSPDFVGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKL 700
            R AW++  +G    +CG+RCA+  G+   VG+  CSLPGC    M++  T ++MGYCC+ HR+ A +R+L    E  VDRTFRGG +   DF+LS+L K H  Y+S+KEQFL  + KP  V G+SV RI K+++P  VR++++ +     N  RRFHGTSCS  C FF+DL+ GPCG  +CNVCSICTHGF+L+ +VG TA++T +NLRYG GLYFSS+SGKANDYA++SEK+
Sbjct:  153 RPAWMDHRSGDQLAFCGSRCAYTCGAQHLVGQMKCSLPGCNDFTMLHDRTMDDMGYCCDYHRIKAEERNLTQNPEAHVDRTFRGGPSD--DFKLSVLTKSHQAYSSLKEQFLVKFQKP--VDGLSVERIFKVQVPGDVRQKHKVFEEATNNTRRRFHGTSCSDACRFFMDLRGGPCGRPDCNVCSICTHGFRLRGSVGRTAQRTNMNLRYGEGLYFSSVSGKANDYAAQSEKV 381          
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: A0A6H5JPY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY9_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 3.460e-77
Identity = 119/233 (51.07%), Postives = 165/233 (70.82%), Query Frame = 2
Query:    2 RAAWVEEDTGHLFLYCGTRCAHAAGSPDFVGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKL 700
            R AW++  +G    +CG+RCA+  G+  FVG+  CSLPGC    M++  T ++MGYC + HR+ A +R+L    E  VDRTFRGG +   DF+LS+L K H  ++S+KEQFL  + KP  + G+SV RI K+++P  VR +++ + +   N  RRFHGTSCS  C FF+DL+ GPCG  +CNVCSICTHGF+L+ + G TA++T + LRYG GLYFSS+SGKANDYA++SEK+
Sbjct:  123 RPAWMDIRSGDQLAFCGSRCAYTCGAHHFVGQMKCSLPGCNDFTMLHDRTMDDMGYCRDYHRIKAEERNLTQNPEAHVDRTFRGGPSD--DFKLSVLTKSHQAHSSLKEQFLVKFQKP--IDGLSVERIFKVQVPGDVRHKHKVFEKATNNTRRRFHGTSCSDACRFFMDLRGGPCGRPDCNVCSICTHGFRLRGSAGRTAQRTNMKLRYGEGLYFSSVSGKANDYAAQSEKV 351          
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LS88_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS88_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 5.960e-69
Identity = 126/270 (46.67%), Postives = 165/270 (61.11%), Query Frame = 2
Query:  104 CSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPV--SEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPSLERWVG---QALNYDEVVVFREEAALP 898
            C L  C    + +  T E++GYC EGHRLL+   S G +  SEP+V   +  GT     F L  L + HP   S++ QF   WVKP+P  G+SV+RI ++++P  VR +++ Y R V N+ RRFHGTSCS  C F VD +  PCG   C++C+I   GF+L +NVG TA     NLRYG G+YFSS+SGKANDYA  + K  + G  +RCMF+A+VA GKA+ T E   L     P     P  E  VG   Q LNYDE+VV++EEAALP
Sbjct:  179 CKLRYCSVGTLHHLQTGEDLGYCSEGHRLLSKPPSKGQLRSSEPYVHGVYSVGTPR---FNLCALDEAHPECPSLRSQFSTKWVKPQPAEGISVVRIFRVEVPAEVRDKHDKYARTVRNIRRRFHGTSCSDGCNFIVDPQRSPCGLRSCSLCNISMRGFKLDENVGRTALARNFNLRYGKGVYFSSVSGKANDYADLTAKTAKDGTKLRCMFVANVAAGKAYSTKEKA-LDDGKCP----PPGYESVVGEVGQGLNYDELVVYKEEAALP 440          
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LKU8_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU8_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 2.570e-66
Identity = 113/231 (48.92%), Postives = 148/231 (64.07%), Query Frame = 2
Query:  221 SEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESV----PLTPANAPRLVTTPSLERWVGQALNYDEVVVFREEAALPN 901
            ++  V++TFRGGTT ATDF LS L K HP Y S+  QF+  W+KP   G   V+RIL++K+P+ + ++   Y++   NV RRFHGTSCS  C FFVDLK  PC    CNVC+ICTHGF L+DNV  TAR+     RYG GLYFSS+SGK+NDYA +SEK+   G  VRCMF+A+V  G A+ T +         PA    +V        VG  L +DE+V + +EAA+P+
Sbjct:    4 TQSHVEQTFRGGTTGATDFVLSALSKAHPQYPSLCHQFVSKWLKP---GVPRVLRILEVKVPDDIYQKTVCYKKAKGNVRRRFHGTSCSAQCNFFVDLKGNPCSSKACNVCNICTHGFVLRDNVRGTARRANYRRRYGEGLYFSSVSGKSNDYAQQSEKVGSDGKKVRCMFVANVTAGNAYLTQQGSLGQDMCPPAGYDSVVGE------VGSGLIHDELVAYEDEAAIPS 225          
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LKU6_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU6_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 7.660e-64
Identity = 114/232 (49.14%), Postives = 146/232 (62.93%), Query Frame = 2
Query:   89 VGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRL--LATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVS-VIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSE 775
            +G   C L GC      +P T  E  YC  GH+   +A  + +  V+   V + FRGGTT ATDF LS+L K H  Y+S+  QF+  WVK    GGV  V RIL++K+P  +  +   Y++   N+ RRFHGTSCS  C FFVDLK  PC    CNVC+ICT+GF L+ NVG TA++T I LRYG GLYFSS+SGK+NDYA  SEK+   G  VRCMF+A+V  G A+ T +
Sbjct:   21 MGASECKLKGCSKNVYRDPVTGLESDYCSRGHQAHAIALGQGMRTVTS-HVQQVFRGGTTGATDFMLSVLSKSHHQYSSLCHQFISKWVK----GGVPHVRRILEVKVPADIYGKYANYKKAKGNIRRRFHGTSCSAGCNFFVDLKGNPCSSRGCNVCNICTNGFMLQGNVGGTAKRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVGSDGKKVRCMFIANVTAGNAYLTQQ 247          
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LS85_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS85_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 7.530e-55
Identity = 115/276 (41.67%), Postives = 158/276 (57.25%), Query Frame = 2
Query:  104 CSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDR-----TFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGIN--LRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTP----SLERWVGQALNYDEVVVFREEAALP 898
            C LPGC     +  GT   + +C E HR+L  QR+  P  +P  +            TSA   EL  L + HP + S+ +QF   W+  +P  GV V+ ++KI++P  VR ++E Y+ +V NV RRFHGT  SRIC F+V      C   +C +C+IC  GF+++DNVGH+  +      L YG GLYFSS+SGKAND+++E+EKL   G  VRCM +A VA GKAF T+E         P++   P    S+   VG  LNYDE+VV+   AALP
Sbjct:   84 CGLPGCQ-QKALPGGTWRSLRFCSEAHRILFVQRTPVPFGQPSAEPYTTQVVVARDNTSA--LELRFLDEGHPEHKSLADQFTSKWLHSKPKLGVEVLNVVKIEVPREVRERHEDYKTMVPNVRRRFHGTFSSRICRFYVG--GSMCLRPDCGLCNICMRGFKIEDNVGHSPARGKRRQWLMYGKGLYFSSVSGKANDFSAETEKLATDGTTVRCMLVADVAAGKAFVTTEKY------FPQMERPPLGYNSVVGEVGPHLNYDELVVYDPAAALP 348          
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: A0A6H5JBF5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.640e-52
Identity = 100/210 (47.62%), Postives = 135/210 (64.29%), Query Frame = 2
Query:  284 SILMKLHPN---YASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEG--PCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPSLERWVGQALNYDEVVVFREEAALP 898
            S+L  L  N   Y +++  F   W+KP P  GVS+ R+  I++   +R ++E Y+ +  N+ +RFHGTSC+  C F VD + G  PCG+S C+VC+IC  GF+L  NV  TAR TG+ LRYG G+Y +S+SGKANDYAS S K     + +RCMF+ASVAVG+AF+T  +    PAN        S+   VGQ LN+DE VV+ EEAALP
Sbjct:   15 SVLQMLEENSREYTALRGLFNARWMKPRPAKGVSIERVYSIQVSREMREKHERYKGMFGNLCQRFHGTSCNEGCNFMVDPQGGQAPCGKSSCSVCNICKLGFKLGANVAGTARATGVPLRYGEGIYLTSVSGKANDYASRSAKKIGIASELRCMFVASVAVGRAFKTKST--RLPANQCPPPGYQSVVGEVGQGLNFDEFVVYNEEAALP 222          
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LKU5_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU5_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 6.840e-49
Identity = 109/222 (49.10%), Postives = 143/222 (64.41%), Query Frame = 2
Query:  254 GTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRR-VVTNVARRFHGTSCSRICTFFVDLK--EGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPS----LERWVGQALNYDEVVVFREEAALP 898
            G++S+T   L IL      Y ++ + F   W+KP+P  GVS++RI  I++P  V  ++E Y+R VV N+ +RFHGTSC+  C F VD +    PCG S C+VC+IC  GF+L  NV  TAR +GI LRYG G+YFSS+SGKANDYA  S K    G  +RCMF+A+VA GKAF T +S      + P+    PS    +   VG ALNYDEVVV++EEAALP
Sbjct:  456 GSSSST---LRILDDDDWEYEALCDLFKTRWLKPQPTNGVSIVRIFSIQVPLEVHDKHELYKRMVVVNLRQRFHGTSCNDGCNFMVDPQGATAPCGLSSCSVCNICMLGFKLGKNVARTARASGIPLRYGTGIYFSSVSGKANDYARLSAKTGSDGAELRCMFVANVAGGKAFSTKKS------HLPQSECPPSGCQSVVGEVGHALNYDEVVVYKEEAALP 668          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS86_ECTSI5.260e-12361.92PARP catalytic domain-containing protein n=2 Tax=E... [more]
D8LS87_ECTSI4.270e-9150.17PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LSB5_ECTSI2.740e-8052.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPY9_9PHAE3.460e-7751.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS88_ECTSI5.960e-6946.67PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU8_ECTSI2.570e-6648.92PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU6_ECTSI7.660e-6449.14PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LS85_ECTSI7.530e-5541.67PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JBF5_9PHAE2.640e-5247.62PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU5_ECTSI6.840e-4949.10TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19065contigH-elongata_contig19065:3726..6251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.3
Seed ortholog evalue7.3e-72
Seed eggNOG ortholog2880.D8LS87
EggNOG OGs28J37@1,2S14A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPoly(ADP-ribose) polymerase, catalytic domain
Ec32 orthologEc-12_004440.1
Exons6
Model size1237
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19065.5265.1prot_H-elongata_contig19065.5265.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19065 4038..6118 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930090.7004478-UTR-H-elongata_contig19065:3725..40371622930090.7004478-UTR-H-elongata_contig19065:3725..4037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19065 3726..4037 -
1691679276.5863562-UTR-H-elongata_contig19065:3725..40371691679276.5863562-UTR-H-elongata_contig19065:3725..4037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19065 3726..4037 -
1622930090.7946744-UTR-H-elongata_contig19065:6118..62511622930090.7946744-UTR-H-elongata_contig19065:6118..6251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19065 6119..6251 -
1691679276.66277-UTR-H-elongata_contig19065:6118..62511691679276.66277-UTR-H-elongata_contig19065:6118..6251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19065 6119..6251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930090.7202983-CDS-H-elongata_contig19065:4037..41281622930090.7202983-CDS-H-elongata_contig19065:4037..4128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 4038..4128 -
1691679276.600658-CDS-H-elongata_contig19065:4037..41281691679276.600658-CDS-H-elongata_contig19065:4037..4128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 4038..4128 -
1622930090.731314-CDS-H-elongata_contig19065:4401..45381622930090.731314-CDS-H-elongata_contig19065:4401..4538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 4402..4538 -
1691679276.6107173-CDS-H-elongata_contig19065:4401..45381691679276.6107173-CDS-H-elongata_contig19065:4401..4538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 4402..4538 -
1622930090.7429357-CDS-H-elongata_contig19065:4763..49431622930090.7429357-CDS-H-elongata_contig19065:4763..4943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 4764..4943 -
1691679276.6196027-CDS-H-elongata_contig19065:4763..49431691679276.6196027-CDS-H-elongata_contig19065:4763..4943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 4764..4943 -
1622930090.7566006-CDS-H-elongata_contig19065:5290..54071622930090.7566006-CDS-H-elongata_contig19065:5290..5407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 5291..5407 -
1691679276.6275735-CDS-H-elongata_contig19065:5290..54071691679276.6275735-CDS-H-elongata_contig19065:5290..5407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 5291..5407 -
1622930090.770285-CDS-H-elongata_contig19065:5692..58811622930090.770285-CDS-H-elongata_contig19065:5692..5881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 5693..5881 -
1691679276.6356611-CDS-H-elongata_contig19065:5692..58811691679276.6356611-CDS-H-elongata_contig19065:5692..5881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 5693..5881 -
1622930090.7814708-CDS-H-elongata_contig19065:6040..61181622930090.7814708-CDS-H-elongata_contig19065:6040..6118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 6041..6118 -
1691679276.6443145-CDS-H-elongata_contig19065:6040..61181691679276.6443145-CDS-H-elongata_contig19065:6040..6118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19065 6041..6118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19065.5265.1

>prot_H-elongata_contig19065.5265.1 ID=prot_H-elongata_contig19065.5265.1|Name=mRNA_H-elongata_contig19065.5265.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFEL
SILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEG
YRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLK
DNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMF
MASVAVGKAFRTSESVPLTPANAPRLVTTPSLERWVGQALNYDEVVVFRE
EAALPNPSHRLLS*
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mRNA from alignment at H-elongata_contig19065:3726..6251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19065.5265.1 ID=mRNA_H-elongata_contig19065.5265.1|Name=mRNA_H-elongata_contig19065.5265.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2526bp|location=Sequence derived from alignment at H-elongata_contig19065:3726..6251- (Himanthalia elongata Himel1 dioecious)
CAGGGCAGCCTGGGTAGAGGAAGATACGGGCCACTTGTTTTTGTACTGTG GTACTCGGTGTGCGCACGCGGCGGGCTCGCCTGATTTCGTCGGGAAGGGG TGGTGCAGCTTGCCCGGGTGCGTGGGAATCAATATGATCAATCCTGGGAC CAAGGAGGAGATGGGTTACTGCTGCGAAGGTCACCGACTACTAGCTACTC AGCGATCCTTGGTGAGCCCGGCAGGCGTAGAGGCGTGTGCGTGCGCTGCC CGCGCTTGAGAAAAACTCCCTCTACTCCCGGATGATCTCCATTCCCTCGC CGAGCGTTACCAGGTGTCTTGAATTGTTCTGGGATTGCCTTGCGTTTCTG GTTCAACGCTAACCCGACAGGGACCGGTCTCGGAGCCCTTCGTCGATCGA ACCTTCCGCGGTGGTACTACAAGCGCGACGGACTTCGAGCTGAGCATCCT CATGAAACTGCACCCGAACTACGCCTCGGTCAAAGAGCAGTTCCTCCAGA GTTGGGTTAAGCCCGAGCCCGTCGGCGGCGTTTCAGTCATTCGAATTTTA AAAATTAAGGTGGAACAAAAAGATACCGCCAGGAGACTTAGCGGTATTAC AAATCTGGCAGTTAACGTCGTCGGAACGTCACTGTCATGCGCTTGTCGCG CTGCGCGGTCCCATGGATTCGTTGTCTGTGTTTTGGAATCGGTATGTAAT CTATGCCTAACACCCACCGGAACTTTCATCGCAGCGAGTAACTCTCCATA TGGCCCATAATTTATTTCTCCTAATGCTGGACGTTGATGACGTCATGTTA TCGCCCCGGGGGGGGGGGGATTCATGTTCGCGGTCCGCCTGCAGTTGCCG GAGAGTGTTCGACGCCAGAACGAGGGCTACCGCCGTGTCGTGACCAACGT GGCAAGGCGCTTTCACGGCACATCATGCTCTAGAATCTGCACATTTTTCG TCGATTTAAAGGTGGTGCGGAAGTCGGCGCATCATCGCTGCTACCGATCA ACGTTAGACTGGTGTCCCCGATAACGGTCGAAATACCGAAATATTGTTGG CGATACCTGGCTTTGGGGTACCAGATGTCCTTAACTTGATTTTGTCGAGA CATCCGAGTATTTGCACATACTGTGCGAGTTTCCGCATTCAGCAGGTTTA CTCGTTCAATAGCTCCAGAAGAATCGTCGAAGAAAGATCAGCTCTGTGCG GTGCTTGACCGAAAGGCCTTTTTTTATCTATCCGTTCTTCTCTGAGTTCA AGTGATTATCAAGAGTGCCTGGTGTCCTCTTGGTGGTTTGCATGTCGCAC GTTGACAGGAAGGACCCTGTGGTGAGTCGGAATGTAACGTTTGCAGCATA TGCACCCATGGGTTCCAGCTCAAGGACAACGTGGGCCACACGGCGCGACA GACAGGAATCAATCTGCGCTACGGTCACGGGCTATACTTCAGCAGCATTT CTGGCAAGGCCAACGACTACGCGTCGGAATCTGAAAAGGTATCCTTTTGA GACGACCTCAAGGTAAAACTCAACGCAGCGAATGAAAAAATTATCTCCAG CACAAGCGTGGTACTCGTGATAAACGATACGTAGTAGAATCGTAGCCGCT CCCAAGGACAGGACAAAGTCGCAAACACACTTTGAAGTGTCAAGACTGTT TTGCGTAGGCGGTCGCTAGTTGTAAAAGGCGACGCCCTTCAAAATTTCGT GCTTCTTCTTCAGCTGAACAGATCTGGCAACCTAGTCCGGTGCATGTTCA TGGCAAGCGTCGCGGTGGGGAAGGCGTTCAGGACCTCCGAGAGTGTGCCC TTGACCCCAGCCAATGCCCCCCGCCTGGTTACAACTCCGTCATTGGAGAG GTTTGTATTTTGCATGCCCTCCTCTGAGCGAATGCCTTTTGCACACCTGT GTTAAGGTGCTGTGGGACGGGGCTTCTTCAATTATTTCTTATTTTTGCCG CTGTGCACAATGCACAATCTTCGGCGTGTGGTTTATAAATGGCCACCTGA GACAGTCCAAATTGAAATTGCTGTTCGTCACGCTTGCAGACATTCAGCTT CTTCCAACCCGGGATATATACCTCAGCAAGCACGCCCGTTTTTTTTTTCA CCGGTGTGTCCTCTACCCCAAAGGTGGGTCGGTCAAGCGCTGAACTACGA CGAAGTCGTCGTGTTTAGAGAGGAGGCCGCCCTACCAAACCCATCTCATC GTCTACTGTCTTAACTAAGTAAAACACGCCTCGAGGACGCGCACAGCGTA CCGCTTTGCTCTCCAGGAGCGTGTCGAAATATAAGCAGGAGTTGCGGGTA GGAGATCCTCTTCGATTGCGTCATCAGGATGGCCAGCGAACGCTTCGAGG CACATGTCACCAGTGACTGACATGGTTCTTGTCCGGCCCCGTCGTGTGCC CTTTTGTTAATGTATTATAGCTACTCTAGAGGCTAGAGGCTAGAGGGCTG CTACCTGGTAAAACATTTTATTCTACGTTAGATACTATACTATACTATAT TATACTATACTATACATATCTGCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig19065:3726..6251-

>mRNA_H-elongata_contig19065.5265.1 ID=mRNA_H-elongata_contig19065.5265.1|Name=mRNA_H-elongata_contig19065.5265.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig19065:3726..6251- (Himanthalia elongata Himel1 dioecious)
ATGATCAATCCTGGGACCAAGGAGGAGATGGGTTACTGCTGCGAAGGTCA
CCGACTACTAGCTACTCAGCGATCCTTGATGATCAATCCTGGGACCAAGG
AGGAGATGGGTTACTGCTGCGAAGGTCACCGACTACTAGCTACTCAGCGA
TCCTTGGGACCGGTCTCGGAGCCCTTCGTCGATCGAACCTTCCGCGGTGG
TACTACAAGCGCGACGGACTTCGAGCTGAGCATCCTCATGAAACTGCACC
CGAACTACGCCTCGGTCAAAGAGCAGTTCCTCCAGAGTTGGGTTAAGCCC
GAGCCCGTCGGCGGCGTTTCAGTCATTCGAATTTTAAAAATTAAGGGACC
GGTCTCGGAGCCCTTCGTCGATCGAACCTTCCGCGGTGGTACTACAAGCG
CGACGGACTTCGAGCTGAGCATCCTCATGAAACTGCACCCGAACTACGCC
TCGGTCAAAGAGCAGTTCCTCCAGAGTTGGGTTAAGCCCGAGCCCGTCGG
CGGCGTTTCAGTCATTCGAATTTTAAAAATTAAGTTGCCGGAGAGTGTTC
GACGCCAGAACGAGGGCTACCGCCGTGTCGTGACCAACGTGGCAAGGCGC
TTTCACGGCACATCATGCTCTAGAATCTGCACATTTTTCGTCGATTTAAA
GTTGCCGGAGAGTGTTCGACGCCAGAACGAGGGCTACCGCCGTGTCGTGA
CCAACGTGGCAAGGCGCTTTCACGGCACATCATGCTCTAGAATCTGCACA
TTTTTCGTCGATTTAAAGGAAGGACCCTGTGGTGAGTCGGAATGTAACGT
TTGCAGCATATGCACCCATGGGTTCCAGCTCAAGGACAACGTGGGCCACA
CGGCGCGACAGACAGGAATCAATCTGCGCTACGGTCACGGGCTATACTTC
AGCAGCATTTCTGGCAAGGCCAACGACTACGCGTCGGAATCTGAAAAGGA
AGGACCCTGTGGTGAGTCGGAATGTAACGTTTGCAGCATATGCACCCATG
GGTTCCAGCTCAAGGACAACGTGGGCCACACGGCGCGACAGACAGGAATC
AATCTGCGCTACGGTCACGGGCTATACTTCAGCAGCATTTCTGGCAAGGC
CAACGACTACGCGTCGGAATCTGAAAAGCTGAACAGATCTGGCAACCTAG
TCCGGTGCATGTTCATGGCAAGCGTCGCGGTGGGGAAGGCGTTCAGGACC
TCCGAGAGTGTGCCCTTGACCCCAGCCAATGCCCCCCGCCTGGTTACAAC
TCCGTCATTGGAGAGCTGAACAGATCTGGCAACCTAGTCCGGTGCATGTT
CATGGCAAGCGTCGCGGTGGGGAAGGCGTTCAGGACCTCCGAGAGTGTGC
CCTTGACCCCAGCCAATGCCCCCCGCCTGGTTACAACTCCGTCATTGGAG
AGGTGGGTCGGTCAAGCGCTGAACTACGACGAAGTCGTCGTGTTTAGAGA
GGAGGCCGCCCTACCAAACCCATCTCATCGTCTACTGTCTTAAGTGGGTC
GGTCAAGCGCTGAACTACGACGAAGTCGTCGTGTTTAGAGAGGAGGCCGC
CCTACCAAACCCATCTCATCGTCTACTGTCTTAA
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