mRNA_H-elongata_contig19064.5263.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19064.5263.1
Unique NamemRNA_H-elongata_contig19064.5263.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: D8LTC5_ECTSI (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTC5_ECTSI)

HSP 1 Score: 458 bits (1179), Expect = 5.040e-157
Identity = 258/408 (63.24%), Postives = 286/408 (70.10%), Query Frame = 1
Query:    1 EELLRVAHIHREVLRPGVLSQALLRIAKPLVQVAKQSAMEKVREDPRLLDIFMAASAPAAPTQDLVSEHLQYPRASRGIAMRTANDRPLLSGAQAADIVWACGLLRWLPGDGG----------RIEHLLELIARTAASPGGIDGWHVTNVVWALDRLG-------------GFATEVARGGS-------CGRY--------------------EALDELREKVAPLPFRAVPSLFEGLRVEDFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRR--HTFYLFSGDCVRMTAGCQRDYQHCVKVAKEDVGPRISLVFKQSL 1068
            E+LL VA+ HR  LRPG+LSQALLR+AKPLVQV++Q+A E V  DPRL  +F+AAS+PAA       E    P A+ G           LSG QAAD+VWACGLL+WLP D            R+  L+ L+AR A+S  GID  HVTNV+WAL+RLG                 E ARG         CG                      EA++ELR +V  LPFRA+PSLFEGLRVEDFR EVAF RDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVM+PT FSPNVLRLRD LY+RTGVLYDGVLLNLYES SSAMRYHSDPDVGT+WTQDTSVVSVGDTRQF LR TLDHS R  H FYL SGDCVRMT GCQRDYQHCVKVAKE+VG RISLVFKQS+
Sbjct:   52 EDLLGVAYSHRAALRPGLLSQALLRLAKPLVQVSRQTAREAVLADPRLQALFLAASSPAAADG---GETAAEPAAAGGTNQS-------LSGPQAADVVWACGLLQWLPADDXXXXXXXXXHRRLAQLVALVARAASSKVGIDDGHVTNVLWALERLGVSKSPAEKKRKRKACEAEAARGAETPIAAPGCGAKXXXXXXXXXXXXXXGVWEGDEAVEELRSRVENLPFRAIPSLFEGLRVEDFRDEVAFRRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMEPTSFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRQFALRRTLDHSPRGRHAFYLSSGDCVRMTDGCQRDYQHCVKVAKEEVGARISLVFKQSI 449          
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A836CIU8_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU8_9STRA)

HSP 1 Score: 227 bits (579), Expect = 4.280e-69
Identity = 131/275 (47.64%), Postives = 166/275 (60.36%), Query Frame = 1
Query:  283 AADIVWACGLLRWLPGDGGRIEHLLELIARTAASPGGIDGWHVTNVVWALDRLGGFATEVARGGSCGRYEALDELRE--KVAPLPF----RAVPSLFEGLRVEDFRKEVAFGRDEILLGGG---KVLSESRLTAWQSSDGLPFAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKV----AKEDVGPRISLVFKQSL 1068
            A D +WA GLL   P +G     L  L+AR AA    +    ++ +VW+L R+G              +    EL+   +   LPF    R +P+ +    VE   +EV F RDEI LG G   KVL ESRLTAWQS  GL F+YSGK M P P +P V++LR+ L + TG LYDGVL+NLY + S  MR+H DP  G  WT++T+VVSVG+TRQFV+R   DH+ RH FY+ SGDCVRM   CQRD+QHCVKV    A    GPR+S VFKQS+
Sbjct:   22 AVDALWALGLLGQPPSEGT----LKVLLARLAADASKLQPGQLSAIVWSLQRMG------------AEHLCPQELKRPLEALKLPFSVHQRLLPASWSN--VESIMQEVEFRRDEIRLGEGGVEKVLEESRLTAWQSCTGLSFSYSGKTMAPQPMTPTVIKLREALAEHTGQLYDGVLINLYMTPSVGMRFHQDPGQGEEWTEETAVVSVGETRQFVMRRVDDHADRHVFYVSSGDCVRMFGACQRDWQHCVKVEGGAAAAGGGPRVSFVFKQSM 278          
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A6T6VXL3_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6VXL3_9EUKA)

HSP 1 Score: 194 bits (494), Expect = 2.590e-55
Identity = 107/244 (43.85%), Postives = 143/244 (58.61%), Query Frame = 1
Query:  394 IDGWHVTNVVWALDRLGGFATEVARGGSCGRYEALDELREKVAPLPFRAVPSLFEGLRVEDFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCV-------------------KVAKEDVGPRISLVFKQSL 1068
            +DG +++N+VWA   LG     +A               E+ + LPFR     F  L +E+ R+EV F  DE+ LGG KV+ E R TAWQ+S  +PF YSGK M P   +P +  +R+++Y+ TGV YD  L+NLY  SSS MR+HSDPD G +W+ +T+VVSVGDTR F+LRET  H +RH FY+ SGD + M   CQ  YQH +                   K +K   GPR+S+VFKQSL
Sbjct:  141 LDGVNLSNLVWACRILGIDPPALAL--------------ERESLLPFRLHLQAFPELDIEEIRREVQFKTDEVKLGG-KVIRERRETAWQTSSNVPFRYSGKEMAPAAMTPIIQMVRNKIYNLTGVYYDCALINLYPDSSSGMRFHSDPDQGGIWSHNTAVVSVGDTRLFILRETWKHEKRHHFYVRSGDVMEMVRDCQEKYQHAIRTEESHKFTREMAVETSEFKPSKYTYGPRVSIVFKQSL 369          
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A7S3Z587_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z587_9EUKA)

HSP 1 Score: 179 bits (454), Expect = 2.810e-51
Identity = 98/208 (47.12%), Postives = 123/208 (59.13%), Query Frame = 1
Query:  526 LPFRAVPSLFEGLRVEDFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKVAKEDV---------------------------GPRISLVFKQSL 1068
            LPF     +F+ L V+    EV F  +++ L G K LSE R TAWQSS   PF YSGKVM P+PF+P V  +RD ++  TGV YD  LLNLY   +S MR+HSDPD G  W+ +T+VVSVGDTR FV+RE  DHS+RH FY+ SGD + M   CQ+ YQH ++  +  V                           GPRIS+VFKQSL
Sbjct:    1 LPFTLKMGVFDNLTVDSLLDEVDFKTEQVELQG-KKLSERRQTAWQSSTNKPFRYSGKVMSPSPFTPLVQEIRDRIFKLTGVPYDCALLNLYPDGTSGMRFHSDPDQGIHWSTNTAVVSVGDTRLFVMREMDDHSKRHQFYVTSGDVLIMHGDCQQRYQHSIRTEEPGVRAAGVALDGSSSSSSSRSKHQRWSAALGPRISIVFKQSL 207          
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A8J5XM98_DIALT (Fe2OG dioxygenase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XM98_DIALT)

HSP 1 Score: 172 bits (435), Expect = 1.020e-46
Identity = 135/371 (36.39%), Postives = 178/371 (47.98%), Query Frame = 1
Query:    4 ELLRVAHIHREVLRPGVLSQALLRIAKPLVQVAKQSAMEKVREDPRLLDIFMAASAPAAPTQDLVSEHLQYPRASRGIAMRTANDRPLLSGAQAADIVWACGLLRWLP--GDGGRIEHLLELIARTAASPGGIDGWHVTNVVWALDRLGGFATEVARGGSCGRYEALDE---LREKVAPLPFRAVPSL-----FEGLRVE---DFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPT-PFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKVAKE--DVGPRISLVFKQSL 1068
            E++R    H   L P   S ALLR A         SA+++ R D        AA A +A T  LV+         R +A    N       + A   + A  LL W      G +   +L+ +A  A +PG +     T V WA               +C  +  L     +  ++A LPFR +  +     +E L  E     R+E+   RD     G +++ E+RLT WQS  G+PF+YSGK M P  P       +RD L   +G+ YD  L+NLYE     MRYH DPD GT+W+ DT V S G TR FVLR T DH+  H F L  GD V M   CQ +YQHCV+V ++  D GPRISLVFKQSL
Sbjct:   36 EIMRAVREHAGSLSPAAASFALLRAA---------SALKQPRHDAE-----RAAIAGSADTL-LVA---------RAVAQGVTN------ASTAVIALRALALLGWRADRSTGAKAACVLDKLAARACAPGELTIAEQTAVEWA---------------ACKLHLTLPTPPTVSAQLAALPFRVLSGVCVAVPYETLEAELRPHLRRELIALRDS---RGERLVPEARLTGWQSRAGVPFSYSGKSMAPNVPDGGQFAAVRDTLRALSGIEYDSCLVNLYEHGKVGMRYHQDPDQGTLWSTDTHVASFGCTRAFVLRRTADHALHHEFTLQHGDVVHMFGACQAEYQHCVRVERDEADAGPRISLVFKQSL 358          
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A835WWM2_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WWM2_9CHLO)

HSP 1 Score: 176 bits (447), Expect = 1.430e-46
Identity = 117/282 (41.49%), Postives = 149/282 (52.84%), Query Frame = 1
Query:  250 ANDRPLLSGAQAADIVWACGLLRWLPGDGGRIEHLLELIARTAASPGGIDGWHVTNVVWALDRLGGFATEVARGGSCGRYE---ALDELREKVAPLPFRAVPSLFEGLRVEDFRKEVAFGRDEILL-GGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTP--FSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKV--AKEDVGPRISLVFKQSLR 1071
            A   P L+ A+ A +  A   L   PG  G         A  AA+P  +      ++VWA+                G Y+    +  L  ++A +PF  VP    GLR+EDF  EV   RD I L  G K + ESRLT WQS  G  F YSGK M P P   +P V ++RDEL   TGV YD VL+N Y      MRYH DP  G VW+ +++VVS+GDTR F+ RE  D+  R  + + +GD VRM   CQ   QHCV+V  A ED GPR+SLVFK+ LR
Sbjct:  335 AQGLPPLAAARLAQLTAAVDTLVCAPGHAG---------AAAAAAPV-LTQQQQADLVWAV----------------GHYDWGHCVAALAPRMA-VPFTVVPQFMPGLRLEDFMAEVRLNRDTIYLEDGSKAVEESRLTGWQSDIGATFKYSGKEMIPDPSGMTPAVRQVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYG-VWSPESAVVSIGDTRTFIFREITDYDSRWQYRVRNGDVVRMWGDCQDRLQHCVRVERAAEDAGPRMSLVFKERLR 588          
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A2K3DVE4_CHLRE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DVE4_CHLRE)

HSP 1 Score: 174 bits (442), Expect = 1.190e-45
Identity = 107/254 (42.13%), Postives = 141/254 (55.51%), Query Frame = 1
Query:  343 IEHLLELIARTAAS------PGGIDGWHVTNVVWALDRLGGFATEVARGGSCGRYEALDELREKVAPLPFRAVPSLFEGLRVEDFRKEVAFGRDEILL-GGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTP--FSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKV--AKEDVGPRISLVFKQSLR 1071
            ++ L++  A  A S      P  +   H+ ++VWA+             G C     +  L   +A +PF  VP    GL+++DF  EV   RD I L  G K + ESRLT WQS  G  F YSGK M P P   +P V ++RDEL   TGV YD VL+N Y      MRYH DP  G VW+ +++VVS+GDTR F+ RE  D++ R  + + +GD VRM   CQ   QHCV+V  A ED GPR+SLVFK+ LR
Sbjct:  387 VDQLVKATAAAATSSSQPQQPAPLSQQHLADLVWAVAHYD--------WGHC-----VGALAPAMA-VPFAVVPQFMPGLKLQDFMAEVRLNRDVIYLEDGSKAVEESRLTGWQSDIGATFKYSGKEMVPDPSGMTPAVRKVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYG-VWSPESAVVSIGDTRTFIFREISDYNSRWQYRVRNGDVVRMWGDCQDRLQHCVRVERAAEDAGPRMSLVFKERLR 625          
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A250WY46_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WY46_9CHLO)

HSP 1 Score: 167 bits (422), Expect = 2.250e-45
Identity = 87/186 (46.77%), Postives = 116/186 (62.37%), Query Frame = 1
Query:  523 PLPFRAVPSLFEGLRVEDFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPT-PFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKVAKED-----VGPRISLVFKQ 1062
            PLPF+  P     L+++ F KEV   +D I L  G+ + E RLT WQS  G  F YSGK+M+P+ P SP + ++RD+L D TGV +D VL+N Y+     MR+HSDP  G  WT  T+VVS+G  R+FV RET +   R  + + +GD V M   CQ   QHC+KV +ED     +GPR+SLVFKQ
Sbjct:  127 PLPFKFCPGYMRNLKLQSFLKEVQLQQDVIELHDGRRVEEPRLTGWQSDIGATFEYSGKIMRPSGPLSPEIRKVRDQLIDLTGVKFDSVLINYYKDGRCGMRFHSDPLYGC-WTSSTAVVSIGQARRFVFRETHNVQSRWEYTVKTGDVVFMFGDCQDRLQHCIKVEREDKGALEMGPRMSLVFKQ 311          
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A835TLQ1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TLQ1_CHLIN)

HSP 1 Score: 172 bits (437), Expect = 5.790e-44
Identity = 96/187 (51.34%), Postives = 115/187 (61.50%), Query Frame = 1
Query:  526 LPFRAVPSLFEGLRVEDFRKEVAFGRDEILL-GGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTP--FSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKV--AKEDVGPRISLVFKQSLR 1071
            +PF  VP    GLR+EDF  EVA  RD I L  G K + ESRLT WQS     F YSGK M P P   +P V ++RDEL   TGV YD VL+N Y      MRYH DP  G VW+ +++VVSVGDTR F+ RE  D+  R  + + +GD VRM   CQ   QHCV+V  A  D GPR+SLVFK+ LR
Sbjct:  825 VPFAVVPQFMPGLRLEDFMAEVALNRDVIYLEDGSKAVEESRLTGWQSDIAATFKYSGKEMIPDPSGMTPAVRKVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYG-VWSPESAVVSVGDTRTFIFREIADYDSRWQYRVRNGDVVRMWGDCQDRLQHCVRVERAAADAGPRMSLVFKERLR 1010          
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A7S0S918_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S918_9CHLO)

HSP 1 Score: 155 bits (392), Expect = 1.160e-38
Identity = 75/165 (45.45%), Postives = 109/165 (66.06%), Query Frame = 1
Query:  586 EVAFGRDEILLGGGKVLSESRLTAWQSSDGLP-FAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRET-LDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKVAK--EDVGPRISLVFKQSL 1068
            EV F  ++++   GK + E R T W + +G+   AYSGK+M+PTPF+P V R+RDELY+ TG  +D  LLNLY   S++ +YH+DPD+G +W +D+ +VSVG+TR+F  R      +  H F + SGDC+ M A C   Y+HCV  A+  E+  PR S+VFK+S+
Sbjct:  423 EVPFKAEQLVTRDGKRVDERRETCWMAEEGVGGLAYSGKIMRPTPFTPTVARIRDELYEETGERFDCALLNLYPDGSTSCKYHTDPDLGRLWARDSIIVSVGETRRFAFRRLGATDAEAHWFRVRSGDCIHMFADCNDSYEHCVMKAESEENDAPRASIVFKRSV 587          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTC5_ECTSI5.040e-15763.24Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A836CIU8_9STRA4.280e-6947.64Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6T6VXL3_9EUKA2.590e-5543.85Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S3Z587_9EUKA2.810e-5147.12Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A8J5XM98_DIALT1.020e-4636.39Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A835WWM2_9CHLO1.430e-4641.49Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A2K3DVE4_CHLRE1.190e-4542.13Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A250WY46_9CHLO2.250e-4546.77Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A835TLQ1_CHLIN5.790e-4451.34Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A7S0S918_9CHLO1.160e-3845.45Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19064contigH-elongata_contig19064:1938..4824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score462.6
Seed ortholog evalue1.7e-127
Seed eggNOG ortholog2880.D8LTC5
KEGG koko:K10859
EggNOG free text desc.2OG-Fe(II) oxygenase superfamily
EggNOG OGs2DH22@1,2S5VN@2759
EC1.14.11.33
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase AlkB-like
Ec32 orthologEc-12_006050.1
Exons4
Model size1077
Cds size1077
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19064.5263.1prot_H-elongata_contig19064.5263.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19064 1938..4824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930090.285349-CDS-H-elongata_contig19064:1937..22051622930090.285349-CDS-H-elongata_contig19064:1937..2205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19064 1938..2205 -
1691679276.507676-CDS-H-elongata_contig19064:1937..22051691679276.507676-CDS-H-elongata_contig19064:1937..2205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19064 1938..2205 -
1622930090.3387945-CDS-H-elongata_contig19064:2715..28941622930090.3387945-CDS-H-elongata_contig19064:2715..2894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19064 2716..2894 -
1691679276.5190766-CDS-H-elongata_contig19064:2715..28941691679276.5190766-CDS-H-elongata_contig19064:2715..2894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19064 2716..2894 -
1622930090.3563182-CDS-H-elongata_contig19064:3038..35841622930090.3563182-CDS-H-elongata_contig19064:3038..3584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19064 3039..3584 -
1691679276.5280404-CDS-H-elongata_contig19064:3038..35841691679276.5280404-CDS-H-elongata_contig19064:3038..3584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19064 3039..3584 -
1622930090.3697217-CDS-H-elongata_contig19064:4740..48241622930090.3697217-CDS-H-elongata_contig19064:4740..4824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19064 4741..4824 -
1691679276.5368657-CDS-H-elongata_contig19064:4740..48241691679276.5368657-CDS-H-elongata_contig19064:4740..4824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19064 4741..4824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19064.5263.1

>prot_H-elongata_contig19064.5263.1 ID=prot_H-elongata_contig19064.5263.1|Name=mRNA_H-elongata_contig19064.5263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp
EELLRVAHIHREVLRPGVLSQALLRIAKPLVQVAKQSAMEKVREDPRLLD
IFMAASAPAAPTQDLVSEHLQYPRASRGIAMRTANDRPLLSGAQAADIVW
ACGLLRWLPGDGGRIEHLLELIARTAASPGGIDGWHVTNVVWALDRLGGF
ATEVARGGSCGRYEALDELREKVAPLPFRAVPSLFEGLRVEDFRKEVAFG
RDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTPFSPNVLRLRDE
LYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQ
FVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKVAKEDVGPRISL
VFKQSLRL*
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mRNA from alignment at H-elongata_contig19064:1938..4824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19064.5263.1 ID=mRNA_H-elongata_contig19064.5263.1|Name=mRNA_H-elongata_contig19064.5263.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2887bp|location=Sequence derived from alignment at H-elongata_contig19064:1938..4824- (Himanthalia elongata Himel1 dioecious)
GAGGAACTGCTGAGGGTCGCCCACATTCATAGAGAGGTGCTGCGACCCGG TGTTCTTTCCCAGGCTCTTCTCCGAATCGCGAAGGTGAGATTTAAGTGAA GAGCATGGCACAGCGGTCAGCAGCACATGGAAACTTAAGGTTTCCACCTT TGCCTGTAAAACCGACTCTTATGGAGCAGAAAAATATAACCCCAAAACGT TATTCTTGTATTTTGGCCGTAAAACCTATTTTAAGGCTCGGAAAAAAACG CTTTCAGATCCCTTTTCCTCGGAGGAGCCGCTTTTGGAGGAGCAGTTGGT AAGAAATGTTGGCCAAAATGTAGCAATAATTCGTAAAAACATGGTCAGAA ATCACCGCGCCAGGCTATACGAAGACGTAAGAGCGGGACTGTTGTCTATC AGCCAACCCGGACAATCAAAGTGGCACTGTTCCTTCAGGAACCCTTTGAA GGCAGCAAATACATAAATCTTGAACGAGTTGGTTGTATACTTCTTTGCGC TATGATCATGGCCTCGTGGCGCTTGATGTCGATGCAGGCGCTATTAAGCG CTTAGTTCGTAGTGAGGTAACAACCCCCTGCCGCGGATTTTTCGATATCG CACCTCGTTTTCTTGGCATTGTTTATACTGGATTTAGTGTGCTTTTCCTT GCAGGGTGTTTGGGATGCCAAATATGTTACCGTTTTTTCAGATGGTTGAC AATTTTGCACGACATGCGAATTTGTCCTACACCCTACACCCTTAACTCAA TCACACCTTTCGAACATCCACACTAAATCCTATATACTTCACTACACCAC GAATGGTATAGTCAAAGGGACTATGACCAACTATCGTCACGTTTGAGTGT GTTCATTACACCCTATGAGCACAAAATCTCCCCAAGCAAGATTTGAGGAG GTAAAGCCTATCAAGGCGCAGGCGCCAGCGTTGGGTAAAGCATATATCAA CCGAAGGTACAACAAGTATAGCACACATTTACGGTGAAAGAACAATCACG ATACAAGTTCAGTACTAATGGCTAAACTGCGATTACTAGGATATCATATC TCCTTGAGAGTTTTATGAATTGAATATATTTTCGGCAGGAGCGCTACCAC GTTGAGATCGCGCATGTGCTCCATATTTTACGCCGCTGAGCATACCGCGT ATTAGAACAGCAACAGCAGCGTTGCTGCGTGCTGCGTTTTTTGGGTGCAA ACAATCAATTAATCTTTCCGGGATATCCTACGGCTCGCAGCCTCTCGTGC AGGTAGCTAAACAATCCGCAATGGAAAAGGTGAGAGAAGACCCCAGACTG CTGGACATTTTCATGGCTGCGTCCGCGCCTGCAGCCCCAACGCAGGACTT GGTTAGCGAGCATTTGCAGTATCCACGAGCATCGAGGGGTATCGCGATGC GCACGGCAAACGATCGCCCCCTTCTGTCAGGTGCCCAGGCCGCGGACATC GTTTGGGCTTGTGGCTTGCTCCGGTGGCTCCCCGGCGATGGTGGCCGCAT TGAGCATCTCTTGGAATTGATTGCGCGGACCGCTGCGTCGCCGGGCGGCA TCGATGGGTGGCACGTGACGAACGTCGTATGGGCGCTCGACCGATTGGGC GGGTTTGCAACCGAAGTGGCGCGCGGGGGATCTTGTGGTCGATACGAAGC ACTTGATGAGCTCCGAGAGAAGGTGGCACCCCTTCCGTTCCGAGCAGTTC CGTCGCTCTTCGAAGGTCTTCGCGTCGAGGACTTTAGGAAGGAAGTGGCG TTCGGCAGGGACGAAATCCTTCTTGGAGGCGGAAAGGTAAATCGGTCGGT TCATGTTGATGTACTTTTTTTAAACTGTTGACAGTTCTTGGGTGAATAAT CAATTTCTATAATAGTTACGCCGAGCTAAAGCGTCATTACGGTTTCAAAA TGTCTTGGAGCTATCGCTTGACTCGACCAGGTTCTTTCGGAGTCCAGGCT GACCGCTTGGCAAAGCAGCGACGGCTTACCCTTCGCCTACAGTGGCAAGG TGATGAAGCCGACGCCATTCTCTCCTAACGTGCTCCGTCTCCGAGACGAG CTGTATGATAGGACTGGAGTGCTGTACGACGGGGTGCTGCTGAACCTTTA CGAGTCCAGGTATAGTGCTTGCGAAATTGATCGCGTCACCGCGGCGTTTG ATCAAAACGTGCGATTGAATTATGTTGTCAACCTGTGGTGGAGTTCTCAA AAGTGATGTTTCGATTTCCAATGAGGCAGTACTGAAATACCCCAGAGAGG TTCTTATTGTTCATTTCTTGATGCTTTGTATATAGCTCCACAGTTGGTAA TAAAATGAGTACCGAACGTTTCTTGGTCGTATACCAAGTAGACTCAGGCA TTTGGTATACAACAATTATCATAATCTCAATTAGGGTTAGGATTGGGTTG GATTGGATCCACTTGAACCATGTTACCCTGTATTTAAATTAATTATATGG ACCATCCGCCGCTGTCTATCAAATGTTTTAAAAATACTCATCTCGCTGAC TTACGATCGCTCTTTTCCCTGGGAAACATGTTGGACTAAATGTGTTTCCT ACACACATAAAACCACCCCATCCGTCCACAACCATTTTTCGCCGTCTGAC TGCGGTGGGGCCGCGCCAGCTCGAGTGCTATGCGGTACCACTCCGACCCA GACGTGGGTACCGTCTGGACCCAAGACACTTCCGTCGTCTCCGTCGGAGA TACTCGCCAATTCGTCCTGCGCGAGACCCTCGATCACTCCCGGCGCCACA CATTTTACCTCTTCAGCGGGGACTGCGTCAGAATGACCGCCGGCTGCCAG CGAGACTACCAACACTGCGTGAAGGTGGCGAAGGAGGACGTAGGCCCACG GATATCCCTCGTGTTCAAGCAGAGCTTGCGGTTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig19064:1938..4824-

>mRNA_H-elongata_contig19064.5263.1 ID=mRNA_H-elongata_contig19064.5263.1|Name=mRNA_H-elongata_contig19064.5263.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2154bp|location=Sequence derived from alignment at H-elongata_contig19064:1938..4824- (Himanthalia elongata Himel1 dioecious)
GAGGAACTGCTGAGGGTCGCCCACATTCATAGAGAGGTGCTGCGACCCGG
TGTTCTTTCCCAGGCTCTTCTCCGAATCGCGAAGGAGGAACTGCTGAGGG
TCGCCCACATTCATAGAGAGGTGCTGCGACCCGGTGTTCTTTCCCAGGCT
CTTCTCCGAATCGCGAAGCCTCTCGTGCAGGTAGCTAAACAATCCGCAAT
GGAAAAGGTGAGAGAAGACCCCAGACTGCTGGACATTTTCATGGCTGCGT
CCGCGCCTGCAGCCCCAACGCAGGACTTGGTTAGCGAGCATTTGCAGTAT
CCACGAGCATCGAGGGGTATCGCGATGCGCACGGCAAACGATCGCCCCCT
TCTGTCAGGTGCCCAGGCCGCGGACATCGTTTGGGCTTGTGGCTTGCTCC
GGTGGCTCCCCGGCGATGGTGGCCGCATTGAGCATCTCTTGGAATTGATT
GCGCGGACCGCTGCGTCGCCGGGCGGCATCGATGGGTGGCACGTGACGAA
CGTCGTATGGGCGCTCGACCGATTGGGCGGGTTTGCAACCGAAGTGGCGC
GCGGGGGATCTTGTGGTCGATACGAAGCACTTGATGAGCTCCGAGAGAAG
GTGGCACCCCTTCCGTTCCGAGCAGTTCCGTCGCTCTTCGAAGGTCTTCG
CGTCGAGGACTTTAGGAAGGAAGTGGCGTTCGGCAGGGACGAAATCCTTC
TTGGAGGCGGAAAGCCTCTCGTGCAGGTAGCTAAACAATCCGCAATGGAA
AAGGTGAGAGAAGACCCCAGACTGCTGGACATTTTCATGGCTGCGTCCGC
GCCTGCAGCCCCAACGCAGGACTTGGTTAGCGAGCATTTGCAGTATCCAC
GAGCATCGAGGGGTATCGCGATGCGCACGGCAAACGATCGCCCCCTTCTG
TCAGGTGCCCAGGCCGCGGACATCGTTTGGGCTTGTGGCTTGCTCCGGTG
GCTCCCCGGCGATGGTGGCCGCATTGAGCATCTCTTGGAATTGATTGCGC
GGACCGCTGCGTCGCCGGGCGGCATCGATGGGTGGCACGTGACGAACGTC
GTATGGGCGCTCGACCGATTGGGCGGGTTTGCAACCGAAGTGGCGCGCGG
GGGATCTTGTGGTCGATACGAAGCACTTGATGAGCTCCGAGAGAAGGTGG
CACCCCTTCCGTTCCGAGCAGTTCCGTCGCTCTTCGAAGGTCTTCGCGTC
GAGGACTTTAGGAAGGAAGTGGCGTTCGGCAGGGACGAAATCCTTCTTGG
AGGCGGAAAGGTTCTTTCGGAGTCCAGGCTGACCGCTTGGCAAAGCAGCG
ACGGCTTACCCTTCGCCTACAGTGGCAAGGTGATGAAGCCGACGCCATTC
TCTCCTAACGTGCTCCGTCTCCGAGACGAGCTGTATGATAGGACTGGAGT
GCTGTACGACGGGGTGCTGCTGAACCTTTACGAGTCCAGGTTCTTTCGGA
GTCCAGGCTGACCGCTTGGCAAAGCAGCGACGGCTTACCCTTCGCCTACA
GTGGCAAGGTGATGAAGCCGACGCCATTCTCTCCTAACGTGCTCCGTCTC
CGAGACGAGCTGTATGATAGGACTGGAGTGCTGTACGACGGGGTGCTGCT
GAACCTTTACGAGTCCAGCTCGAGTGCTATGCGGTACCACTCCGACCCAG
ACGTGGGTACCGTCTGGACCCAAGACACTTCCGTCGTCTCCGTCGGAGAT
ACTCGCCAATTCGTCCTGCGCGAGACCCTCGATCACTCCCGGCGCCACAC
ATTTTACCTCTTCAGCGGGGACTGCGTCAGAATGACCGCCGGCTGCCAGC
GAGACTACCAACACTGCGTGAAGGTGGCGAAGGAGGACGTAGGCCCACGG
ATATCCCTCGTGTTCAAGCAGAGCTTGCGGTTGTAACTCGAGTGCTATGC
GGTACCACTCCGACCCAGACGTGGGTACCGTCTGGACCCAAGACACTTCC
GTCGTCTCCGTCGGAGATACTCGCCAATTCGTCCTGCGCGAGACCCTCGA
TCACTCCCGGCGCCACACATTTTACCTCTTCAGCGGGGACTGCGTCAGAA
TGACCGCCGGCTGCCAGCGAGACTACCAACACTGCGTGAAGGTGGCGAAG
GAGGACGTAGGCCCACGGATATCCCTCGTGTTCAAGCAGAGCTTGCGGTT
GTAA
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