mRNA_H-elongata_contig190630.5262.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190630.5262.1
Unique NamemRNA_H-elongata_contig190630.5262.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190630.5262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190630contigH-elongata_contig190630:34..394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size155
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930090.2248776-CDS-H-elongata_contig190630:33..1101622930090.2248776-CDS-H-elongata_contig190630:33..110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190630 34..110 +
1691679276.4846177-CDS-H-elongata_contig190630:33..1101691679276.4846177-CDS-H-elongata_contig190630:33..110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190630 34..110 +
1622930090.2476702-CDS-H-elongata_contig190630:316..3921622930090.2476702-CDS-H-elongata_contig190630:316..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190630 317..392 +
1691679276.4971063-CDS-H-elongata_contig190630:316..3921691679276.4971063-CDS-H-elongata_contig190630:316..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190630 317..392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190630.5262.1prot_H-elongata_contig190630.5262.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190630 34..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190630.5262.1

>prot_H-elongata_contig190630.5262.1 ID=prot_H-elongata_contig190630.5262.1|Name=mRNA_H-elongata_contig190630.5262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
AKACSIHCDASNKSTSVRVPAHLILRWTLFLLLTLSAALRSDPEPSHELS
H
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mRNA from alignment at H-elongata_contig190630:34..394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190630.5262.1 ID=mRNA_H-elongata_contig190630.5262.1|Name=mRNA_H-elongata_contig190630.5262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=361bp|location=Sequence derived from alignment at H-elongata_contig190630:34..394+ (Himanthalia elongata Himel1 dioecious)
GCAAAGGCGTGTTCGATACACTGTGACGCCTCGAATAAATCTACCTCCGT
GCGTGTACCCGCGCATCTTATACTAAGGCGAGTCGTTTTATGTGAATTCC
CTCCTTCCCCAGGGTATTAAAAACTCATCTCAGCCCATTTTTTTCTGCTG
CCCAAGTGCTTTCTATCACTCATATAACTGTTACAGAAAAGGCACTATTT
CCATCGCATTAGTAACGACAGTATTTTCATCGACGAGAGTTCTCCTTCCC
TGCTCTCATTAACCCCCTTCCGTTTCCGTCCAGGTGGACACTCTTCCTCC
TCTTGACCTTATCGGCGGCCCTCAGAAGCGACCCCGAACCGTCCCACGAG
TTGTCCCACGC
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Coding sequence (CDS) from alignment at H-elongata_contig190630:34..394+

>mRNA_H-elongata_contig190630.5262.1 ID=mRNA_H-elongata_contig190630.5262.1|Name=mRNA_H-elongata_contig190630.5262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig190630:34..394+ (Himanthalia elongata Himel1 dioecious)
GCAAAGGCGTGTTCGATACACTGTGACGCCTCGAATAAATCTACCTCCGT
GCGTGTACCCGCGCATCTTATACTAAGGCAAAGGCGTGTTCGATACACTG
TGACGCCTCGAATAAATCTACCTCCGTGCGTGTACCCGCGCATCTTATAC
TAAGGTGGACACTCTTCCTCCTCTTGACCTTATCGGCGGCCCTCAGAAGC
GACCCCGAACCGTCCCACGAGTTGTCCCACGTGGACACTCTTCCTCCTCT
TGACCTTATCGGCGGCCCTCAGAAGCGACCCCGAACCGTCCCACGAGTTG
TCCCAC
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