mRNA_H-elongata_contig190531.5257.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190531.5257.1
Unique NamemRNA_H-elongata_contig190531.5257.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: D8LQQ0_ECTSI (GPI ethanolamine phosphate transferase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQQ0_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.240e-34
Identity = 65/95 (68.42%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGG--------------------KLVFMGDDTWTSLYPTYFSRSYPFPSFNTR 225
            QRLKGLTTGGLPTFIDFR+NFHS +IAEDNWVAQ++ RAAR  G                     +LVFMGDDTWTSLYPTYFSRSYPFPSFNTR
Sbjct:  144 QRLKGLTTGGLPTFIDFRDNFHSAQIAEDNWVAQVRERAARRRGASGDVNAXXXXXXXXXXXXXXELVFMGDDTWTSLYPTYFSRSYPFPSFNTR 238
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BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: A0A836CFR5_9STRA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.350e-29
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKLVFMGDDTWTSLYPTYFSRSYPFPSFNTR 225
            QRLKGLTTG LPTFIDFRNNFHSP+I EDNWV Q     A   G  LVFMGDDTW SL+P+ F R++PFPSFNTR
Sbjct:  113 QRLKGLTTGALPTFIDFRNNFHSPQIEEDNWVQQ-----AAALGMPLVFMGDDTWASLFPSQFQRAFPFPSFNTR 182
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BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: A0A4D9CYS9_9STRA (GPI ethanolamine phosphate transferase 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYS9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.180e-25
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKLVFMGDDTWTSLYPTYFSRSYPFPSFNTR 225
            QRLKGLTTG LPTF+DFR NFHSP IAEDN V Q+K       G ++ FMGDDTW  L+P  F RS+P+PSFNTR
Sbjct:  155 QRLKGLTTGALPTFLDFRQNFHSPAIAEDNLVHQLKQ-----AGKRITFMGDDTWELLFPGAFDRSFPYPSFNTR 224
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BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: A0A7R9UGL9_9STRA (GPI ethanolamine phosphate transferase 3 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGL9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.130e-23
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKL-VFMGDDTWTSLYPTYFSRSYPFPSFNTR 225
            QRLKGLTTGGLPTF+DFR NFHS  + EDN ++Q+    + G   +  V MGDDTWT+LYP  F R+YP+PSFN+R
Sbjct:   66 QRLKGLTTGGLPTFVDFRKNFHSSGVEEDNILSQLLKSNSTGLVKEYGVLMGDDTWTALYPESFERAYPYPSFNSR 141
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BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: A0A6D2L725_9BRAS (GPI ethanolamine phosphate transferase 3 n=2 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2L725_9BRAS)

HSP 1 Score: 99.0 bits (245), Expect = 1.810e-22
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKLVFMGDDTWTSLYPTYFSRSYPFPSFNTR 225
            QRLKGLTTGGLPTFID  N+F +P I EDN+++Q+        G +LV MGDDTWT L+P  F +SYPFPSFN +
Sbjct:  138 QRLKGLTTGGLPTFIDVGNSFGAPAIVEDNFISQLVLN-----GKRLVMMGDDTWTQLFPNQFQKSYPFPSFNVK 207
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BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: A0A6P8ZCE0_THRPL (GPI ethanolamine phosphate transferase 3 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZCE0_THRPL)

HSP 1 Score: 99.0 bits (245), Expect = 1.820e-22
Identity = 48/73 (65.75%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKLVFMGDDTWTSLYPTYFSRSYPFPSFN 219
            QRLKGLTTG LPTFID  +NF S EI EDN + Q+     RG G K VFMGDDTWT LYP  F R +PFPSFN
Sbjct:  141 QRLKGLTTGSLPTFIDMGSNFASTEINEDNLIDQL-----RGKGKKAVFMGDDTWTGLYPRRFEREFPFPSFN 208
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BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: UPI001B356BD9 (LOW QUALITY PROTEIN: uncharacterized protein LOC100779849 n=1 Tax=Glycine max TaxID=3847 RepID=UPI001B356BD9)

HSP 1 Score: 98.6 bits (244), Expect = 2.450e-22
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKLVFMGDDTWTSLYPTYFSRSYPFPSFNTR 225
            QRLKGLTTGGLPTF+D  N+F +P I EDN++ Q+        G K+V MGDDTWT L+P +F RSYP+PSFN +
Sbjct:   92 QRLKGLTTGGLPTFVDVGNSFSAPAIVEDNFINQLVQN-----GXKVVMMGDDTWTQLFPHHFERSYPYPSFNVK 161
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BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: A0A6P4Y384_BRABE (GPI ethanolamine phosphate transferase 3 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Y384_BRABE)

HSP 1 Score: 98.6 bits (244), Expect = 2.490e-22
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKLVFMGDDTWTSLYPTYFSRSYPFPSFNTR 225
            QRLKGLTTG LPTFID  +NF S E+ EDN + Q+      GG  K++FMGDDTWT LYP +F + YPFPSFN +
Sbjct:  133 QRLKGLTTGSLPTFIDVSSNFASSEVTEDNVIHQLA-----GGDRKVIFMGDDTWTGLYPKHFHKVYPFPSFNVK 202
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BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: A0A2K3MW30_TRIPR (GPI ethanolamine phosphate transferase 3 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MW30_TRIPR)

HSP 1 Score: 97.4 bits (241), Expect = 3.040e-22
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKLVFMGDDTWTSLYPTYFSRSYPFPSFNTR 225
            QRLKGLTTGGLPTF+D  N+F +P I EDN++ Q+        G K+V MGDDTWT L+P +F RSYP+PSFN +
Sbjct:  133 QRLKGLTTGGLPTFVDVGNSFGAPAIVEDNFINQLFQN-----GKKVVMMGDDTWTQLFPHHFERSYPYPSFNVK 202
[Close]
BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Match: S8CTG6_9LAMI (GPI ethanolamine phosphate transferase 3 (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CTG6_9LAMI)

HSP 1 Score: 98.2 bits (243), Expect = 3.380e-22
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKLVFMGDDTWTSLYPTYFSRSYPFPSFNTR 225
            QRLKGLTTGGLPTFID  N+F +PEI ED+W+ Q+        G ++V MGDDTW  L+P +F RS+PFPSFN +
Sbjct:  108 QRLKGLTTGGLPTFIDVGNSFGAPEIVEDSWIHQLVRN-----GKRVVMMGDDTWVQLFPDHFIRSHPFPSFNVK 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190531.5257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQQ0_ECTSI3.240e-3468.42GPI ethanolamine phosphate transferase 3 n=2 Tax=E... [more]
A0A836CFR5_9STRA6.350e-2972.00GPI ethanolamine phosphate transferase 3 n=1 Tax=T... [more]
A0A4D9CYS9_9STRA9.180e-2565.33GPI ethanolamine phosphate transferase 3 n=2 Tax=M... [more]
A0A7R9UGL9_9STRA1.130e-2360.53GPI ethanolamine phosphate transferase 3 (Fragment... [more]
A0A6D2L725_9BRAS1.810e-2260.00GPI ethanolamine phosphate transferase 3 n=2 Tax=C... [more]
A0A6P8ZCE0_THRPL1.820e-2265.75GPI ethanolamine phosphate transferase 3 n=1 Tax=T... [more]
UPI001B356BD92.450e-2258.67LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A6P4Y384_BRABE2.490e-2260.00GPI ethanolamine phosphate transferase 3 n=3 Tax=B... [more]
A0A2K3MW30_TRIPR3.040e-2258.67GPI ethanolamine phosphate transferase 3 (Fragment... [more]
S8CTG6_9LAMI3.380e-2258.67GPI ethanolamine phosphate transferase 3 (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190531contigH-elongata_contig190531:616..918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.4e-28
Seed eggNOG ortholog2880.D8LQQ0
Preferred namePIGO
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016780,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051377,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.mannose-ethanolamine phosphotransferase activity
EggNOG OGsCOG1524@1,KOG2126@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.7112215-CDS-H-elongata_contig190531:615..7361622930088.7112215-CDS-H-elongata_contig190531:615..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190531 616..736 +
1691679276.1995213-CDS-H-elongata_contig190531:615..7361691679276.1995213-CDS-H-elongata_contig190531:615..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190531 616..736 +
1622930088.7247107-CDS-H-elongata_contig190531:814..9181622930088.7247107-CDS-H-elongata_contig190531:814..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190531 815..918 +
1691679276.2139707-CDS-H-elongata_contig190531:814..9181691679276.2139707-CDS-H-elongata_contig190531:814..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190531 815..918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190531.5257.1prot_H-elongata_contig190531.5257.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190531 616..918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190531.5257.1

>prot_H-elongata_contig190531.5257.1 ID=prot_H-elongata_contig190531.5257.1|Name=mRNA_H-elongata_contig190531.5257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
QRLKGLTTGGLPTFIDFRNNFHSPEIAEDNWVAQIKTRAARGGGGKLVFM
GDDTWTSLYPTYFSRSYPFPSFNTR
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mRNA from alignment at H-elongata_contig190531:616..918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190531.5257.1 ID=mRNA_H-elongata_contig190531.5257.1|Name=mRNA_H-elongata_contig190531.5257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig190531:616..918+ (Himanthalia elongata Himel1 dioecious)
CAGAGACTGAAAGGTCTGACGACGGGTGGGCTGCCGACGTTTATCGACTT
TCGCAACAACTTCCACAGCCCGGAAATCGCTGAGGACAACTGGGTGGCGC
AGATCAAGACGCGAGCGGCTCGTCGAGGAAGACAAGAACGACCTCAGCAT
CGACACCAGAAACGCCTCCTTACAACCGATCCCGAGAGGCGTTTCGAAGG
CGGGGGTGGGGGCAAGCTGGTTTTCATGGGGGACGATACATGGACTTCTC
TGTATCCAACATACTTTTCGCGCAGCTATCCTTTTCCCTCGTTCAACACG
AGG
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Coding sequence (CDS) from alignment at H-elongata_contig190531:616..918+

>mRNA_H-elongata_contig190531.5257.1 ID=mRNA_H-elongata_contig190531.5257.1|Name=mRNA_H-elongata_contig190531.5257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig190531:616..918+ (Himanthalia elongata Himel1 dioecious)
CAGAGACTGAAAGGTCTGACGACGGGTGGGCTGCCGACGTTTATCGACTT
TCGCAACAACTTCCACAGCCCGGAAATCGCTGAGGACAACTGGGTGGCGC
AGATCAAGACGCGAGCGGCTCCAGAGACTGAAAGGTCTGACGACGGGTGG
GCTGCCGACGTTTATCGACTTTCGCAACAACTTCCACAGCCCGGAAATCG
CTGAGGACAACTGGGTGGCGCAGATCAAGACGCGAGCGGCTCGCGGGGGT
GGGGGCAAGCTGGTTTTCATGGGGGACGATACATGGACTTCTCTGTATCC
AACATACTTTTCGCGCAGCTATCCTTTTCCCTCGTTCAACACGAGGGCGG
GGGTGGGGGCAAGCTGGTTTTCATGGGGGACGATACATGGACTTCTCTGT
ATCCAACATACTTTTCGCGCAGCTATCCTTTTCCCTCGTTCAACACGAGG
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