mRNA_H-elongata_contig190471.5255.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190471.5255.1
Unique NamemRNA_H-elongata_contig190471.5255.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: D8LLN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN3_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.030e-20
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1
Query:    4 LPRGVEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMAQ 180
            + RGVEDIIR RGA PATVA+L GRPHVGLT  QLE+L+EAGPR +KCSRRDLAVA+AQ
Sbjct:   76 MARGVEDIIRERGAVPATVAVLQGRPHVGLTASQLESLAEAGPRARKCSRRDLAVALAQ 134          
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: A0A835YQE2_9STRA (Pseudouridine-5'-phosphate glycosidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.060e-12
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   16 VEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMAQ 180
            VE+I+R  G TPAT+AI+ G P VGLT  QLE L++AG   +KCSRRD+A+AMAQ
Sbjct:   52 VEEIVREHGCTPATIAIMEGMPCVGLTQEQLEVLAKAGTSVRKCSRRDIALAMAQ 106          
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: A0A7S2TTA8_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TTA8_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 7.460e-11
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   10 RGVEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMAQ 180
            R VED++R  GATPAT+AIL G+  VGLT  QLE L   G + +KCSRRDLA+ +AQ
Sbjct:   81 RRVEDVVRKYGATPATIAILDGKVLVGLTSNQLEKLGTLGSKCRKCSRRDLALVVAQ 137          
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: A0A7S2GBG0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GBG0_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 8.180e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   10 RGVEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMA 177
            R VED+IR +GATPAT+ IL G+ HVG+T  QLE L   G   +K SRRDLA  +A
Sbjct:   44 REVEDVIRKQGATPATIGILGGKVHVGMTTEQLETLGRLGLECRKVSRRDLAAVVA 99          
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: E1ZLK7_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLK7_CHLVA)

HSP 1 Score: 64.3 bits (155), Expect = 1.410e-10
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 DLPRGVEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMA 177
            D  R VE ++R+ GA PAT+A+L G PHVGLT  QLE L+ AG   +K SRRDL + MA
Sbjct:   78 DTARQVEAVVRAHGAVPATIAVLRGVPHVGLTAAQLERLARAGSAVRKVSRRDLPLVMA 136          
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: UPI001557C40C (pseudouridine-5'-phosphate glycosidase n=1 Tax=Pseudoruegeria sp. HB172150 TaxID=2721164 RepID=UPI001557C40C)

HSP 1 Score: 63.9 bits (154), Expect = 1.680e-10
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   10 RGVEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMAQAR 186
            R VED IR+ GATPAT+AIL GR H+GLTPGQLE L++A     K SR DLAVA+A  R
Sbjct:   42 RLVEDDIRAAGATPATIAILDGRLHIGLTPGQLETLAQA-QNVLKLSRADLAVALATGR 99          
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: A0A261XU02_9FUNG (PfkB domain-containing protein (Fragment) n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XU02_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 4.110e-10
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   16 VEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMA 177
            VEDIIRS G  PAT+AI+ G+ ++GLTP  LE L E G ++ K SRRDLAV MA
Sbjct:  106 VEDIIRSNGCVPATIAIMDGKVNIGLTPEHLEKLGEMGAKSHKTSRRDLAVVMA 159          
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: A0A8H7VZH1_9FUNG (Uncharacterized protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7VZH1_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 4.290e-10
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   10 RGVEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMAQAR 186
            + VE IIR +GA PAT+AIL G+ H+GLT   LE L + GP+ +K SRRDL+V ++Q R
Sbjct:   55 KAVEAIIRQQGAIPATIAILDGKVHIGLTDESLEQLGKVGPKAQKTSRRDLSVVLSQKR 113          
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: A0A5J4Y1R7_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y1R7_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 4.800e-10
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   16 VEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMAQ 180
            VE+++RS  A PATVA+LAG PHVGLT  QL  +++ G + KK SRRDLA  MA+
Sbjct:   67 VEEVVRSNAAVPATVAVLAGVPHVGLTENQLHDIAKKGLKVKKTSRRDLAYVMAR 121          
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Match: A0A8H7QL76_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7QL76_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 5.610e-10
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   10 RGVEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCSRRDLAVAMAQ 180
            + VE+IIR +GA PAT+A+L GR H+GLT   LE L + GP+ +K SRRDL+V ++Q
Sbjct:  451 KAVENIIREQGAVPATIALLDGRVHIGLTDETLEHLGKIGPKAQKTSRRDLSVVLSQ 507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190471.5255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN3_ECTSI2.030e-2077.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQE2_9STRA5.060e-1261.82Pseudouridine-5'-phosphate glycosidase n=1 Tax=Tri... [more]
A0A7S2TTA8_9EUKA7.460e-1159.65Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S2GBG0_9DINO8.180e-1157.14Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
E1ZLK7_CHLVA1.410e-1055.93Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
UPI001557C40C1.680e-1064.41pseudouridine-5'-phosphate glycosidase n=1 Tax=Pse... [more]
A0A261XU02_9FUNG4.110e-1061.11PfkB domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8H7VZH1_9FUNG4.290e-1054.24Uncharacterized protein n=1 Tax=Thamnidium elegans... [more]
A0A5J4Y1R7_9CHLO4.800e-1058.18Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A8H7QL76_9FUNG5.610e-1054.39Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190471contigH-elongata_contig190471:997..1182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog2880.D8LLN3
KEGG rclassRC00002,RC00017,RC00432,RC00433
KEGG koko:K16329,ko:K16330
KEGG ReactionR01055,R03315
KEGG Pathwayko00240,map00240
GOsGO:0001522,GO:0003674,GO:0003824,GO:0004730,GO:0006139,GO:0006213,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009116,GO:0009451,GO:0009987,GO:0016070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016835,GO:0016836,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050225,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:1901135,GO:1901360,GO:1901564,GO:1901657
EggNOG free text desc.Pseudouridine-metabolizing bifunctional protein
EggNOG OGsCOG2313@1,KOG3009@2759
EC2.7.1.83,4.2.1.70
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.5121233-CDS-H-elongata_contig190471:996..11821622930088.5121233-CDS-H-elongata_contig190471:996..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190471 997..1182 -
1691679276.1009686-CDS-H-elongata_contig190471:996..11821691679276.1009686-CDS-H-elongata_contig190471:996..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190471 997..1182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190471.5255.1prot_H-elongata_contig190471.5255.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190471 997..1182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190471.5255.1

>prot_H-elongata_contig190471.5255.1 ID=prot_H-elongata_contig190471.5255.1|Name=mRNA_H-elongata_contig190471.5255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
DLPRGVEDIIRSRGATPATVAILAGRPHVGLTPGQLEALSEAGPRTKKCS
RRDLAVAMAQAR
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mRNA from alignment at H-elongata_contig190471:997..1182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190471.5255.1 ID=mRNA_H-elongata_contig190471.5255.1|Name=mRNA_H-elongata_contig190471.5255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig190471:997..1182- (Himanthalia elongata Himel1 dioecious)
GATCTCCCTAGGGGCGTGGAGGACATCATCCGCTCCCGGGGCGCGACTCC GGCAACGGTGGCGATCCTCGCGGGTAGGCCGCACGTGGGACTGACGCCGG GCCAGCTGGAAGCGCTGTCCGAGGCCGGGCCTCGGACGAAGAAGTGTTCG AGGCGCGATCTCGCTGTCGCGATGGCACAGGCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig190471:997..1182-

>mRNA_H-elongata_contig190471.5255.1 ID=mRNA_H-elongata_contig190471.5255.1|Name=mRNA_H-elongata_contig190471.5255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig190471:997..1182- (Himanthalia elongata Himel1 dioecious)
GATCTCCCTAGGGGCGTGGAGGACATCATCCGCTCCCGGGGCGCGACTCC
GGCAACGGTGGCGATCCTCGCGGGTAGGCCGCACGTGGGACTGACGCCGG
GCCAGCTGGAAGCGCTGTCCGAGGCCGGGCCTCGGACGAAGAAGTGTTCG
AGGCGCGATCTCGCTGTCGCGATGGCACAGGCAAGGGATCTCCCTAGGGG
CGTGGAGGACATCATCCGCTCCCGGGGCGCGACTCCGGCAACGGTGGCGA
TCCTCGCGGGTAGGCCGCACGTGGGACTGACGCCGGGCCAGCTGGAAGCG
CTGTCCGAGGCCGGGCCTCGGACGAAGAAGTGTTCGAGGCGCGATCTCGC
TGTCGCGATGGCACAGGCAAGG
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