mRNA_H-elongata_contig19047.5254.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19047.5254.1
Unique NamemRNA_H-elongata_contig19047.5254.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19047.5254.1 vs. uniprot
Match: D7G731_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G731_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 2.120e-121
Identity = 238/356 (66.85%), Postives = 277/356 (77.81%), Query Frame = 1 
Query:    1 DVRRIKQQLEVAERRVKNSLYITEAHENMVTKAKEREKDANVRATELDRKLRRALERLESIYRRDMIAGLGASCHRDEWEMHDVERELRAHQMDPELYLPVNTAKRRHLARSEKRLLRLRRRHESQLAALKQAQAVERLHSDLRSAVGCNDLSETKRLLSSGISVNAPDEAGLSAFLYTCGQANEDLVRAMVDAGGDVLDGDGIITGLIIAARKKGSLRVVQTLICEGADVHARDSAGGTALHASVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLAAPTTHPTDHDSNIDI----LGAQLVSLLLEWGASTDIKNFKGLTPVTAALDAKRRSLVVAYQDFFGGDLPSLGIDRE 1056
            + RRIK+QLEVAERRVKNS YI EAHE++  KA EREK+AN RA EL R+L RALE+LESI R+DMI  L  SC RDE +    ERELRAHQMDPELYLPVNTAKRR +ARSEKRL RLR RHESQ AAL QAQA ERLH+DLR A G  D+ +T + L SGISVN PD++GLSAFLY CGQAN +LV+ +VDAGGDVLDGDG ITGLIIAARK G++ VVQTL+  GADV ARDSAGGTALHA+ L     XXXXXXXXXXXXXXXXXXXXXXXX+LA+ ++     D   D+     GA +  LLLEWGAS DIKN KGLTP++AALD + R++V+AY++FFG D     +D +
Sbjct:  172 EARRIKRQLEVAERRVKNSFYINEAHESLAAKATEREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAERELRAHQMDPELYLPVNTAKRRQVARSEKRLRRLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANAELVQILVDAGGDVLDGDGTITGLIIAARK-GTMGVVQTLLEAGADVCARDSAGGTALHAATLHRHVDXXXXXXXXXXXXXXXXXXXXXXXXMLASVSS---GKDGGSDVRGGETGADVAGLLLEWGASADIKNSKGLTPISAALDTRNRAMVLAYREFFGEDSGLAAVDAD 523
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19047.5254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G731_ECTSI2.120e-12166.85Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19047contigH-elongata_contig19047:2529..4348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.7
Seed ortholog evalue1.2e-101
Seed eggNOG ortholog2880.D7G731
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_011230.1
Exons2
Model size1056
Cds size1056
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.4448006-CDS-H-elongata_contig19047:2528..29421622930088.4448006-CDS-H-elongata_contig19047:2528..2942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19047 2529..2942 -
1691679276.0817454-CDS-H-elongata_contig19047:2528..29421691679276.0817454-CDS-H-elongata_contig19047:2528..2942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19047 2529..2942 -
1622930088.46554-CDS-H-elongata_contig19047:3706..43481622930088.46554-CDS-H-elongata_contig19047:3706..4348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19047 3707..4348 -
1691679276.091802-CDS-H-elongata_contig19047:3706..43481691679276.091802-CDS-H-elongata_contig19047:3706..4348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19047 3707..4348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19047.5254.1prot_H-elongata_contig19047.5254.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19047 2529..4348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19047.5254.1

>prot_H-elongata_contig19047.5254.1 ID=prot_H-elongata_contig19047.5254.1|Name=mRNA_H-elongata_contig19047.5254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=352bp
DVRRIKQQLEVAERRVKNSLYITEAHENMVTKAKEREKDANVRATELDRK
LRRALERLESIYRRDMIAGLGASCHRDEWEMHDVERELRAHQMDPELYLP
VNTAKRRHLARSEKRLLRLRRRHESQLAALKQAQAVERLHSDLRSAVGCN
DLSETKRLLSSGISVNAPDEAGLSAFLYTCGQANEDLVRAMVDAGGDVLD
GDGIITGLIIAARKKGSLRVVQTLICEGADVHARDSAGGTALHASVLRGH
VDLSRVLLEAGSDCNAVDQGTNTPLHVLAAPTTHPTDHDSNIDILGAQLV
SLLLEWGASTDIKNFKGLTPVTAALDAKRRSLVVAYQDFFGGDLPSLGID
RE
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mRNA from alignment at H-elongata_contig19047:2529..4348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19047.5254.1 ID=mRNA_H-elongata_contig19047.5254.1|Name=mRNA_H-elongata_contig19047.5254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1820bp|location=Sequence derived from alignment at H-elongata_contig19047:2529..4348- (Himanthalia elongata Himel1 dioecious)
GATGTCAGGCGCATCAAGCAACAGCTGGAAGTTGCCGAGCGCAGGGTGAA
AAATTCCCTGTACATCACCGAAGCTCACGAAAACATGGTGACTAAAGCCA
AAGAAAGAGAGAAAGATGCCAACGTCCGAGCGACCGAGCTTGACCGTAAG
CTGCGGCGCGCGCTCGAGAGGCTGGAGTCGATCTACCGCAGAGATATGAT
CGCCGGACTTGGTGCATCATGCCACAGGGACGAGTGGGAGATGCACGACG
TCGAGCGAGAGCTGCGAGCACATCAGATGGATCCCGAACTATATCTCCCC
GTCAACACCGCGAAGCGACGACACCTTGCACGGTCAGAGAAGCGACTTCT
TCGACTACGACGTCGACACGAGAGTCAGTTGGCCGCGCTGAAACAGGCTC
AGGCGGTAGAGCGATTGCACTCGGATCTGCGTAGTGCAGTGGGGTGTAAC
GATCTGTCCGAGACGAAGAGACTCCTCTCGTCCGGAATTTCAGTTAACGC
CCCCGATGAGGCCGGGCTCTCCGCCTTTTTGTATACATGCGGTCAAGCAA
ACGAAGATTTGGTTCGAGCTATGGTAGACGCTGGTGGCGACGTGCTCGAC
GGCGATGGGATTATCACGGGGCTCATCATCGCCGCTCGCAAGGTACTGTG
CAAGACATACATCTACCAAAATTAAAGTACACTCACTTCGTGCTTGTGAG
GAGCATATTGTTGCAACAAGGCACCCACTTTGACACCCAGTTTAAGATGA
TTGTCTCACAAGTCGGAAAGGTCACGCCGAAGCAATCATTCCCTCCAACC
GTGTGGTGCATCTCCGTGTGATAGTAATGTCCACTCTACCATTTCGTCCA
TGTATTTACAGCATTAAGGGCGGGTATTAACGAGGTTACAAAATATTAAA
TTACAGCCGATTTAAATTTAATCGGGCTCTGATTGGGCCAAGACAAGACA
TTATTTTGATTTCGACCAATCAGAGTCCGATTTAAATTTAAATCGGCCAG
GAATTAAAAAAGTTGTAACCCCGTTAAGGGCGGGTATTAATGGGGTTACA
AAAGTTTTAATTCCAGTCGATTTATATTTTAATCGGGCTCTGATTGGACG
AAGGCTAGGCGTTATTGAGCTTTCTACCAATCAGAGCCTGATTTTAATTT
AAATCGACTGGAAATTTTAATTTTTGTATTCCGATAAGACCCGACCTAAT
ACCCGCCCTAATACTTTAGTTCTTCTGGTCTGTTTATGATATTCTTCTAT
TTATCCCACCTACGGCTGATCTAAACCCCGCCCGACATATTGGTAAAATA
TTAAGCGAACATCGAAAGAAAACCGCCTTCCTGGTTCAGAAACCCAACCG
CCAAGACTTCACCCACAAAATTACTCTGATCTCCCAACCAATGTACCCCT
CATAAGAAGGGTTCCCTACGTGTCGTACAGACGCTCATATGTGAGGGCGC
GGACGTGCATGCCAGAGACTCCGCCGGAGGGACAGCACTTCACGCGTCTG
TCCTTAGAGGGCATGTGGATCTGTCCCGCGTGCTACTTGAAGCCGGATCG
GACTGCAACGCGGTCGATCAGGGCACGAACACTCCACTGCACGTACTGGC
TGCCCCAACCACTCACCCTACTGATCATGATAGCAATATCGATATATTGG
GTGCGCAGCTAGTTTCCTTGCTGCTTGAGTGGGGAGCCTCGACCGACATC
AAGAATTTCAAGGGGCTTACCCCCGTGACCGCCGCCCTCGACGCCAAGAG
GCGGTCGCTCGTGGTGGCCTACCAAGACTTTTTCGGCGGAGATCTACCCA
GCCTTGGCATCGATAGGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig19047:2529..4348-

>mRNA_H-elongata_contig19047.5254.1 ID=mRNA_H-elongata_contig19047.5254.1|Name=mRNA_H-elongata_contig19047.5254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2112bp|location=Sequence derived from alignment at H-elongata_contig19047:2529..4348- (Himanthalia elongata Himel1 dioecious)
GATGTCAGGCGCATCAAGCAACAGCTGGAAGTTGCCGAGCGCAGGGTGAA
AAATTCCCTGTACATCACCGAAGCTCACGAAAACATGGTGACTAAAGCCA
AAGAAAGAGAGAAAGATGCCAACGTCCGAGCGACCGAGCTTGACCGTAAG
CTGCGGCGCGCGCTCGAGAGGCTGGAGTCGATCTACCGCAGAGATATGAT
CGCCGGACTTGGTGCATCATGCCACAGGGACGAGTGGGAGATGCACGACG
TCGAGCGAGAGCTGCGAGCACATCAGATGGATCCCGAACTATATCTCCCC
GTCAACACCGCGAAGCGACGACACCTTGCACGGTCAGAGAAGCGACTTCT
TCGACTACGACGTCGACACGAGAGTCAGTTGGCCGCGCTGAAACAGGCTC
AGGCGGTAGAGCGATTGCACTCGGATCTGCGTAGTGCAGTGGGGTGTAAC
GATCTGTCCGAGACGAAGAGACTCCTCTCGTCCGGAATTTCAGTTAACGC
CCCCGATGAGGCCGGGCTCTCCGCCTTTTTGTATACATGCGGTCAAGCAA
ACGAAGATTTGGTTCGAGCTATGGTAGACGCTGGTGGCGACGTGCTCGAC
GGCGATGGGATTATCACGGGGCTCATCATCGCCGCTCGCAAGGATGTCAG
GCGCATCAAGCAACAGCTGGAAGTTGCCGAGCGCAGGGTGAAAAATTCCC
TGTACATCACCGAAGCTCACGAAAACATGGTGACTAAAGCCAAAGAAAGA
GAGAAAGATGCCAACGTCCGAGCGACCGAGCTTGACCGTAAGCTGCGGCG
CGCGCTCGAGAGGCTGGAGTCGATCTACCGCAGAGATATGATCGCCGGAC
TTGGTGCATCATGCCACAGGGACGAGTGGGAGATGCACGACGTCGAGCGA
GAGCTGCGAGCACATCAGATGGATCCCGAACTATATCTCCCCGTCAACAC
CGCGAAGCGACGACACCTTGCACGGTCAGAGAAGCGACTTCTTCGACTAC
GACGTCGACACGAGAGTCAGTTGGCCGCGCTGAAACAGGCTCAGGCGGTA
GAGCGATTGCACTCGGATCTGCGTAGTGCAGTGGGGTGTAACGATCTGTC
CGAGACGAAGAGACTCCTCTCGTCCGGAATTTCAGTTAACGCCCCCGATG
AGGCCGGGCTCTCCGCCTTTTTGTATACATGCGGTCAAGCAAACGAAGAT
TTGGTTCGAGCTATGGTAGACGCTGGTGGCGACGTGCTCGACGGCGATGG
GATTATCACGGGGCTCATCATCGCCGCTCGCAAGAAGGGTTCCCTACGTG
TCGTACAGACGCTCATATGTGAGGGCGCGGACGTGCATGCCAGAGACTCC
GCCGGAGGGACAGCACTTCACGCGTCTGTCCTTAGAGGGCATGTGGATCT
GTCCCGCGTGCTACTTGAAGCCGGATCGGACTGCAACGCGGTCGATCAGG
GCACGAACACTCCACTGCACGTACTGGCTGCCCCAACCACTCACCCTACT
GATCATGATAGCAATATCGATATATTGGGTGCGCAGCTAGTTTCCTTGCT
GCTTGAGTGGGGAGCCTCGACCGACATCAAGAATTTCAAGGGGCTTACCC
CCGTGACCGCCGCCCTCGACGCCAAGAGGCGGTCGCTCGTGGTGGCCTAC
CAAGACTTTTTCGGCGGAGATCTACCCAGCCTTGGCATCGATAGGGAAAA
GGGTTCCCTACGTGTCGTACAGACGCTCATATGTGAGGGCGCGGACGTGC
ATGCCAGAGACTCCGCCGGAGGGACAGCACTTCACGCGTCTGTCCTTAGA
GGGCATGTGGATCTGTCCCGCGTGCTACTTGAAGCCGGATCGGACTGCAA
CGCGGTCGATCAGGGCACGAACACTCCACTGCACGTACTGGCTGCCCCAA
CCACTCACCCTACTGATCATGATAGCAATATCGATATATTGGGTGCGCAG
CTAGTTTCCTTGCTGCTTGAGTGGGGAGCCTCGACCGACATCAAGAATTT
CAAGGGGCTTACCCCCGTGACCGCCGCCCTCGACGCCAAGAGGCGGTCGC
TCGTGGTGGCCTACCAAGACTTTTTCGGCGGAGATCTACCCAGCCTTGGC
ATCGATAGGGAA
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