mRNA_H-elongata_contig190435.5252.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190435.5252.1
Unique NamemRNA_H-elongata_contig190435.5252.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.620e-33
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   31 VFYLADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            VF +ADLSMKFERHLDC+AVDF+PL EGYEKLAFLLADRTL FHAGYG+HH+VR+PRFGRSLAYQRE+C+
Sbjct:   81 VFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAFHAGYGKHHSVRIPRFGRSLAYQRETCD 150
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BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.990e-21
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   31 VFYLADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            V+ +A+LSMKFERHLD + V    L  G+EKL FL ADRTL FHA YG HH VR+PRFGR LAYQ+ +C+
Sbjct:   98 VYEVAELSMKFERHLDAECVAMEVLSAGFEKLVFLQADRTLAFHAAYGMHHAVRIPRFGRDLAYQQAACD 167
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BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: A0A7R9YC92_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC92_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.700e-19
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    4 APSLLPPSPVFY-LADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            A  + PPS   Y L +L +K ER LDC+ VDF+ L E Y K+A LLADRTL FHA YG+H+ +R+P+FGR L YQ  SC+
Sbjct:   83 ATGVYPPSVKIYELEELGLKVERRLDCEVVDFLLLSEDYSKIALLLADRTLAFHAAYGKHYELRIPKFGRCLDYQPTSCD 162
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BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: A0A1Q3AMX3_CEPFO (NUC153 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3AMX3_CEPFO)

HSP 1 Score: 89.0 bits (219), Expect = 7.260e-19
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 LAPSLLPPS-PVFYLADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            +A  + PP   V+ L +LS+KFERHLD + VDF  L   Y KLAFL ADR++  HA YG+HHT+R+PR GR +AY   SC+
Sbjct:  106 IASGIYPPQVKVYELRELSLKFERHLDSEIVDFQVLAHDYSKLAFLCADRSVSLHAKYGKHHTLRIPRMGRDMAYDCWSCD 186
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BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: A0A7S3F079_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F079_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 1.130e-18
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   34 FYLADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            + L +LS+KF RH + D V F  L   ++K  F+LADRT+EFH+ +GRHHT R+P FGR++AYQRE+C+
Sbjct:   13 YELRELSLKFSRHFEADVVQFQILSADWKKCVFMLADRTIEFHSQFGRHHTTRIPHFGRTIAYQRETCD 81
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BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: A0A7S3AY23_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AY23_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 1.150e-18
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   34 FYLADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            + L +LS+KF RH + D V F  L   ++K  F+LADRT+EFH+ +GRHHT R+P FGR++AYQRE+C+
Sbjct:   92 YELRELSLKFSRHFEADVVQFQILSADWKKCVFMLADRTIEFHSQFGRHHTTRIPHFGRTIAYQRETCD 160
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BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: A0A7S3AXP8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AXP8_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 1.340e-18
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   34 FYLADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            + L +LS+KF RH + D V F  L   ++K  F+LADRT+EFH+ +GRHHT R+P FGR++AYQRE+C+
Sbjct:   13 YELRELSLKFSRHFEADVVQFQILSADWKKCVFMLADRTIEFHSQFGRHHTTRIPHFGRTIAYQRETCD 81
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BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: A0A8K0GYF6_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0GYF6_9ROSA)

HSP 1 Score: 87.8 bits (216), Expect = 1.840e-18
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 LAPSLLPPS-PVFYLADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            +A  + PP   V+ L DLS+KFERHLD + +DF  L + Y KLAFL ADR++  HA YG+H+T+R+PR GR LAY   SC+
Sbjct:   75 IASGIYPPQVKVYMLDDLSLKFERHLDSEIIDFQILGDDYSKLAFLCADRSVSLHAKYGKHYTLRIPRMGRDLAYDCWSCD 155
[Close]
BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: A0A1Y1IEX9_KLENI (NUC153 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEX9_KLENI)

HSP 1 Score: 87.0 bits (214), Expect = 3.440e-18
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:   31 VFYLADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            V+  + LSMKFERHLD + VDF  L + Y KLAFL ADRTL+FHA +G ++  R+P+FGR+L Y R SC+
Sbjct:   85 VYEFSQLSMKFERHLDSEIVDFQVLGDDYSKLAFLCADRTLQFHARFGAYYKTRIPKFGRALTYDRWSCD 154
[Close]
BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Match: A0A7S4IGB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IGB1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.380e-18
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   40 LADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRTLEFHAGYGRHHTVRMPRFGRSLAYQRESCE 240
            L++L MKFER+LD +AVD + L E Y KLA L  DRT+EFHA YG H ++R+P FGR++ Y+  SCE
Sbjct:   82 LSELGMKFERYLDAEAVDLLFLGEDYGKLALLRGDRTVEFHAPYGSHASIRIPTFGRAMGYEPTSCE 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190435.5252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI1.620e-3384.29NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z278_9STRA4.990e-2162.86WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7R9YC92_9STRA2.700e-1955.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Q3AMX3_CEPFO7.260e-1953.09NUC153 domain-containing protein n=1 Tax=Cephalotu... [more]
A0A7S3F079_9EUKA1.130e-1853.62Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S3AY23_9EUKA1.150e-1853.62Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S3AXP8_9EUKA1.340e-1853.62Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A8K0GYF6_9ROSA1.840e-1853.09Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A1Y1IEX9_KLENI3.440e-1857.14NUC153 domain-containing protein n=1 Tax=Klebsormi... [more]
A0A7S4IGB1_9STRA4.380e-1856.72Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190435contigH-elongata_contig190435:138..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.9e-29
Seed eggNOG ortholog2880.D7G3M9
Preferred nameNOL10
KEGG koko:K14788
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG2321@1,KOG2321@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.3052108-CDS-H-elongata_contig190435:137..3771622930088.3052108-CDS-H-elongata_contig190435:137..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190435 138..377 +
1691679276.040975-CDS-H-elongata_contig190435:137..3771691679276.040975-CDS-H-elongata_contig190435:137..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190435 138..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190435.5252.1prot_H-elongata_contig190435.5252.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190435 138..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190435.5252.1

>prot_H-elongata_contig190435.5252.1 ID=prot_H-elongata_contig190435.5252.1|Name=mRNA_H-elongata_contig190435.5252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
LAPSLLPPSPVFYLADLSMKFERHLDCDAVDFVPLVEGYEKLAFLLADRT
LEFHAGYGRHHTVRMPRFGRSLAYQRESCE
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mRNA from alignment at H-elongata_contig190435:138..377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190435.5252.1 ID=mRNA_H-elongata_contig190435.5252.1|Name=mRNA_H-elongata_contig190435.5252.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig190435:138..377+ (Himanthalia elongata Himel1 dioecious)
CTTGCTCCCTCCCTCTTACCCCCCTCCCCCGTTTTTTACTTGGCTGACCT
CTCAATGAAGTTCGAGCGGCACCTGGACTGCGACGCCGTCGACTTCGTCC
CCCTCGTGGAGGGCTATGAAAAGCTGGCCTTCCTCCTGGCGGACCGTACG
CTGGAGTTCCACGCGGGCTACGGCAGGCATCACACCGTTAGAATGCCTCG
CTTCGGGAGGTCCCTGGCGTATCAGCGGGAGTCCTGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig190435:138..377+

>mRNA_H-elongata_contig190435.5252.1 ID=mRNA_H-elongata_contig190435.5252.1|Name=mRNA_H-elongata_contig190435.5252.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig190435:138..377+ (Himanthalia elongata Himel1 dioecious)
CTTGCTCCCTCCCTCTTACCCCCCTCCCCCGTTTTTTACTTGGCTGACCT
CTCAATGAAGTTCGAGCGGCACCTGGACTGCGACGCCGTCGACTTCGTCC
CCCTCGTGGAGGGCTATGAAAAGCTGGCCTTCCTCCTGGCGGACCGTACG
CTGGAGTTCCACGCGGGCTACGGCAGGCATCACACCGTTAGAATGCCTCG
CTTCGGGAGGTCCCTGGCGTATCAGCGGGAGTCCTGTGAGCTTGCTCCCT
CCCTCTTACCCCCCTCCCCCGTTTTTTACTTGGCTGACCTCTCAATGAAG
TTCGAGCGGCACCTGGACTGCGACGCCGTCGACTTCGTCCCCCTCGTGGA
GGGCTATGAAAAGCTGGCCTTCCTCCTGGCGGACCGTACGCTGGAGTTCC
ACGCGGGCTACGGCAGGCATCACACCGTTAGAATGCCTCGCTTCGGGAGG
TCCCTGGCGTATCAGCGGGAGTCCTGTGAG
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