mRNA_H-elongata_contig190429.5251.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.130e-65 Identity = 116/125 (92.80%), Postives = 118/125 (94.40%), Query Frame = 1
Query: 22 KHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIE 396
+ QVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRG+GDDG DDV GG LNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGD RFMSIPQEDIE
Sbjct: 655 REQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGDDG--SDDVEGG-LNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIE 776
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE) HSP 1 Score: 220 bits (561), Expect = 5.000e-64 Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 1
Query: 22 KHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIE 396
+ QVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRG+GDDG DDV G LNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGD RFMSIPQEDIE
Sbjct: 908 REQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGDDG--SDDVEEG-LNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIE 1029
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA) HSP 1 Score: 150 bits (378), Expect = 2.220e-39 Identity = 77/126 (61.11%), Postives = 95/126 (75.40%), Query Frame = 1
Query: 22 KHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIEV 399
+ QVELFCIDHLVMVTV+A++EFL LD +FPTTKLH R +GV E D L+G EAA QV++QIL+G+VWEE+AL RAKQ+F Q HE +KSLEG STE LM +MS GD RF+S+P E +
Sbjct: 634 REQVELFCIDHLVMVTVDASEEFLTLDFSFPTTKLHAR----EGVAEGDE----LSGFEAALQVVNQILTGYVWEEDALNRAKQAFYQLHEASIKSLEGSSTEQLMAQMSSGDSRFLSVPHEAVRA 751
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: A0A7S1HIP4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HIP4_HEMAN) HSP 1 Score: 121 bits (303), Expect = 8.580e-30 Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 22 KHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIEV 399
+ QVELFC+DHLV+ + N+EFL+L+ FPT K+ DDVSG ME FQV+H +++ F WEE+AL+RAKQ+F+Q+HE + KSLE + E L++ M GGD R++SIP E +E
Sbjct: 232 REQVELFCVDHLVVAEIACNEEFLFLEFVFPTNKVSNE--------PDDVSG-----MEGVFQVVHGLIADFKWEEDALERAKQAFVQTHEQVSKSLEAAAAEHLLDGMCGGDARYLSIPGEKVEA 344
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: A0A7S1HIF8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HIF8_HEMAN) HSP 1 Score: 121 bits (303), Expect = 2.780e-29 Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 22 KHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIEV 399
+ QVELFC+DHLV+ + N+EFL+L+ FPT K+ DDVSG ME FQV+H +++ F WEE+AL+RAKQ+F+Q+HE + KSLE + E L++ M GGD R++SIP E +E
Sbjct: 693 REQVELFCVDHLVVAEIACNEEFLFLEFVFPTNKVSNE--------PDDVSG-----MEGVFQVVHGLIADFKWEEDALERAKQAFVQTHEQVSKSLEAAAAEHLLDGMCGGDARYLSIPGEKVEA 805
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: A0A7S4HUK7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUK7_9STRA) HSP 1 Score: 119 bits (299), Expect = 9.820e-29 Identity = 59/126 (46.83%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 22 KHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIEV 399
+ QVELFC+DHL+MV + N+E L LD FPTT + G G++ + G+ G EA Q+L +IL F WEE+AL R+KQSF +HE+L K+LEG++TE++ME M+G D RF+SI + +
Sbjct: 768 REQVELFCVDHLIMVEINCNEESLVLDFVFPTTNVGNTGFGENMQL-------GITGTEAVMQILREILVDFHWEEDALGRSKQSFRSAHESLQKNLEGKTTEVIMEGMTGNDKRFLSIDVDTVNA 886
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: A0A7S0CAA1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAA1_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.200e-28 Identity = 56/126 (44.44%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 22 KHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIEV 399
+ QVELFC+DHL+ V ++ N+E + +D FPTT + G G+D + G+ G EA Q+L +I+ GF WEE+AL R+K SF +HE L K+LEG +TE++ME M+G D RF+SI + +
Sbjct: 37 REQVELFCVDHLLQVEIQCNEEAIIIDFVFPTTNVGNTGFGEDAEL-------GITGTEAVMQILREIIIGFKWEEDALGRSKSSFRSAHEGLQKNLEGMTTELIMETMTGQDERFLSIDVDTVNA 155
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: K0TGU5_THAOC (Peptidase_M16_C domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGU5_THAOC) HSP 1 Score: 117 bits (293), Expect = 3.030e-28 Identity = 59/129 (45.74%), Postives = 84/129 (65.12%), Query Frame = 1
Query: 13 RFFKHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIEV 399
RF + QVELF +DHL+MV + N+E L +D FPTT + G GDD + G+ G E+ Q++ +IL F WEE+AL R+KQS+ +HE+L KSLEG STEM+M+ ++ GD RF+SI + +
Sbjct: 70 RFTREQVELFAVDHLIMVEINCNEEALTMDFVFPTTNVGNTGYGDDKRL-------GITGTESVLQIVREILVEFNWEEDALGRSKQSYRTAHESLGKSLEGYSTEMIMDAVASGDSRFLSIDVDTVNA 191
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: A0A7S1BTA2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTA2_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.470e-28 Identity = 57/126 (45.24%), Postives = 83/126 (65.87%), Query Frame = 1
Query: 22 KHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIEV 399
+ QVELFC+DHL+MV + N+EFL D FPT ++ G G++ + G+ G EA Q+L +I+ GF WEE+AL R+KQ+F +H+ L K+LEG +TE LME+M+ D RF+S+ E I+
Sbjct: 370 REQVELFCVDHLIMVEINCNEEFLIFDFVFPTNEVGNVGFGENIKM-------GITGTEAVLQILREIIVGFKWEEDALWRSKQNFYATHDGLSKNLEGMTTEKLMEKMTQNDSRFLSVDHETIDA 488
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Match: A0A7S1BRL0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRL0_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.640e-28 Identity = 57/126 (45.24%), Postives = 83/126 (65.87%), Query Frame = 1
Query: 22 KHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDGVVEDDVSGGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDGRFMSIPQEDIEV 399
+ QVELFC+DHL+MV + N+EFL D FPT ++ G G++ + G+ G EA Q+L +I+ GF WEE+AL R+KQ+F +H+ L K+LEG +TE LME+M+ D RF+S+ E I+
Sbjct: 832 REQVELFCVDHLIMVEINCNEEFLIFDFVFPTNEVGNVGFGENIKM-------GITGTEAVLQILREIIVGFKWEEDALWRSKQNFYATHDGLSKNLEGMTTEKLMEKMTQNDSRFLSVDHETIDA 950 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190429.5251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig190429.5251.1 >prot_H-elongata_contig190429.5251.1 ID=prot_H-elongata_contig190429.5251.1|Name=mRNA_H-elongata_contig190429.5251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp MYIYRFFKHQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGLGDDback to top mRNA from alignment at H-elongata_contig190429:218..1044- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig190429.5251.1 ID=mRNA_H-elongata_contig190429.5251.1|Name=mRNA_H-elongata_contig190429.5251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=827bp|location=Sequence derived from alignment at H-elongata_contig190429:218..1044- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig190429:218..1044- >mRNA_H-elongata_contig190429.5251.1 ID=mRNA_H-elongata_contig190429.5251.1|Name=mRNA_H-elongata_contig190429.5251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig190429:218..1044- (Himanthalia elongata Himel1 dioecious)back to top |