mRNA_H-elongata_contig19035.5249.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19035.5249.1
Unique NamemRNA_H-elongata_contig19035.5249.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19035.5249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19035contigH-elongata_contig19035:4919..5459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size541
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19035.5249.1prot_H-elongata_contig19035.5249.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19035 5014..5358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.0880291-UTR-H-elongata_contig19035:4918..50131622930088.0880291-UTR-H-elongata_contig19035:4918..5013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19035 4919..5013 +
1691679275.9496841-UTR-H-elongata_contig19035:4918..50131691679275.9496841-UTR-H-elongata_contig19035:4918..5013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19035 4919..5013 +
1622930088.1184702-UTR-H-elongata_contig19035:5358..54591622930088.1184702-UTR-H-elongata_contig19035:5358..5459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19035 5359..5459 +
1691679275.9805784-UTR-H-elongata_contig19035:5358..54591691679275.9805784-UTR-H-elongata_contig19035:5358..5459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19035 5359..5459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.1031573-CDS-H-elongata_contig19035:5013..53581622930088.1031573-CDS-H-elongata_contig19035:5013..5358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19035 5014..5358 +
1691679275.964131-CDS-H-elongata_contig19035:5013..53581691679275.964131-CDS-H-elongata_contig19035:5013..5358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19035 5014..5358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19035.5249.1

>prot_H-elongata_contig19035.5249.1 ID=prot_H-elongata_contig19035.5249.1|Name=mRNA_H-elongata_contig19035.5249.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MQAAHFSRSWSIAASFPAGSSMSAVILRTRASTFGSTGLAVPLPSTPNAF
TTFLTMVHVWHKTSGQNSPRWNLQRMERVMYFAHRQLRRRRHASTRALAA
GFDSKQQPKGQARP*
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mRNA from alignment at H-elongata_contig19035:4919..5459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19035.5249.1 ID=mRNA_H-elongata_contig19035.5249.1|Name=mRNA_H-elongata_contig19035.5249.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=541bp|location=Sequence derived from alignment at H-elongata_contig19035:4919..5459+ (Himanthalia elongata Himel1 dioecious)
TGAGACGCGCTTCCTTGAAAAGGGCCAGCTGGCGCCGGAACTTGGTTGCA
GGGTGGTCACCGAAGCGTTTGCACGCATACTGCGACGGGTCGCTGATGCA
GGCCGCGCACTTCTCTCGTAGCTGGTCCATCGCTGCGTCTTTTCCCGCAG
GGAGCTCGATGTCCGCTGTCATCCTGCGCACAAGGGCATCCACGTTCGGC
AGCACTGGCTTGGCGGTGCCCTTACCGTCAACACCAAATGCCTTTACCAC
TTTCCTCACGATGGTCCATGTCTGGCACAAAACATCAGGTCAGAACTCGC
CCCGCTGGAACCTGCAGAGGATGGAACGGGTAATGTATTTTGCGCATCGC
CAGCTGCGAAGGCGCCGCCATGCCTCAACACGCGCACTAGCAGCAGGTTT
TGATTCAAAACAGCAACCCAAAGGCCAAGCCCGGCCCTAAACGGAGTTGT
ACCATTGCGAGGTGTTATTTTCGGGGATTGTTAGCATAACTTGCGCTTGG
GTATGGATCCTAGAGATAAGCTAGATAGACTCAAACATGGG
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Coding sequence (CDS) from alignment at H-elongata_contig19035:4919..5459+

>mRNA_H-elongata_contig19035.5249.1 ID=mRNA_H-elongata_contig19035.5249.1|Name=mRNA_H-elongata_contig19035.5249.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig19035:4919..5459+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGCCGCGCACTTCTCTCGTAGCTGGTCCATCGCTGCGTCTTTTCC
CGCAGGGAGCTCGATGTCCGCTGTCATCCTGCGCACAAGGGCATCCACGT
TCGGCAGCACTGGCTTGGCGGTGCCCTTACCGTCAACACCAAATGCCTTT
ACCACTTTCCTCACGATGGTCCATGTCTGGCACAAAACATCAGGTCAGAA
CTCGCCCCGCTGGAACCTGCAGAGGATGGAACGGGTAATGTATTTTGCGC
ATCGCCAGCTGCGAAGGCGCCGCCATGCCTCAACACGCGCACTAGCAGCA
GGTTTTGATTCAAAACAGCAACCCAAAGGCCAAGCCCGGCCCTAAATGCA
GGCCGCGCACTTCTCTCGTAGCTGGTCCATCGCTGCGTCTTTTCCCGCAG
GGAGCTCGATGTCCGCTGTCATCCTGCGCACAAGGGCATCCACGTTCGGC
AGCACTGGCTTGGCGGTGCCCTTACCGTCAACACCAAATGCCTTTACCAC
TTTCCTCACGATGGTCCATGTCTGGCACAAAACATCAGGTCAGAACTCGC
CCCGCTGGAACCTGCAGAGGATGGAACGGGTAATGTATTTTGCGCATCGC
CAGCTGCGAAGGCGCCGCCATGCCTCAACACGCGCACTAGCAGCAGGTTT
TGATTCAAAACAGCAACCCAAAGGCCAAGCCCGGCCCTAA
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