mRNA_H-elongata_contig19031.5248.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19031.5248.1
Unique NamemRNA_H-elongata_contig19031.5248.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: D7FM24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM24_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 1.340e-97
Identity = 147/188 (78.19%), Postives = 164/188 (87.23%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLGDNDPDWLSGVGPAAVSLVFVAAYKLGKKVNSTKLKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTLVDWKYRPEAELELEGRTYSRINIPMWVGCVIVIGWAVVLVGSLTLFPESGLGALFKAFFRIGSIIYGGGQ 564
            MVVSMG YRAGIPGGLLSFALWN PSFI+L LAGLGV++LLGD+DPDWLSG+GPAA+SLVFVAAYKLGKKVN + LKF+LSLVS CVTL INGDE+I+P VSAWVFPLMLVCGG+V L D K    AEL LEG+TYSRINIPMW+G  I +GWA +LV S++ FP SGLG LFKAFFRIGSIIYGGGQ
Sbjct:   78 MVVSMGAYRAGIPGGLLSFALWNIPSFIVLTLAGLGVKELLGDDDPDWLSGLGPAAISLVFVAAYKLGKKVNKSPLKFSLSLVSACVTLLINGDEDINPNVSAWVFPLMLVCGGLVMLADSK----AELALEGKTYSRINIPMWLGGAIAVGWATILVVSISAFPGSGLGGLFKAFFRIGSIIYGGGQ 261          
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: A0A2R5G6L9_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G6L9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.670e-40
Identity = 93/209 (44.50%), Postives = 124/209 (59.33%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLGDNDPDWLSGVGPAAVSLVFVAAYKLGKKVNS------TKLKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTLVDWK--------YRPEAEL-ELEGRTYSR-INIPMWVGCVIVIGWAVVLVGSLTL-----FPESGLGALFKAFFRIGSIIYGGGQ 564
            MVV++G  RAGIPGGL++F LWN PSFI+ V   L     L +  PD+L G+  AA SLVF+AAY LG KV S       KLK  L+  ST  TL I GD+ I+ + ++  FP+ML+ GG++T+VD +        + P  E+ E + R+  + INI   +G ++ I W V LV  + L         G G LF+AFFR GSIIYGGGQ
Sbjct:  101 MVVAIGATRAGIPGGLVAFVLWNLPSFIVCVTVALLAVSTLDETLPDYLIGLPAAATSLVFLAAYSLGVKVLSHEESYVQKLKIALATASTVGTLLITGDDRINNRWASLAFPVMLIIGGVITVVDSRRPGKLENYFTPPTEIDEADNRSILKNINISPRLGLLLFITWIVTLVSFIALRSAGVLAPGGYGELFEAFFRTGSIIYGGGQ 309          
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: A0A7S3UPW9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPW9_HETAK)

HSP 1 Score: 145 bits (366), Expect = 9.330e-40
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLL-GDNDPDWLSGVGPAAVSLVFVAAYKLGKKVNSTK---LKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTL 354
            MVVS GT++ GI GGLL+FALWN PSF++LVLAGLGVR  L GD DP W+SG+ PAA SL+FVA + LGKKV   +   LK  L+L S  +T+ +NGD NI P  SAW+FPL+LV GG+  L
Sbjct:   97 MVVSTGTFKGGILGGLLAFALWNLPSFVVLVLAGLGVRTFLDGDADPAWMSGLAPAASSLLFVACFTLGKKVTGGEPRTLKIALALTSALITVLLNGDNNIDPAASAWLFPLLLVLGGLAVL 218          
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: A0A7S2KXW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KXW7_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.350e-36
Identity = 84/201 (41.79%), Postives = 121/201 (60.20%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLGDNDPD-WLSGVGPAAVSLVFVAAYKLGKKVNSTKLKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTLVDWK-------YR-PEAELELEGRTYSRINIPMWVGCVIVIGWAVVLVGSLTLFPESGLG----ALFKAFFRIGSIIYGGGQ 564
            +VVS    RAG  GGLL+F LWN P  I+L   G+ +++ +  +DP  +L G+ PAA+SLVF A Y  G K++  +L   L+  S  + + +NGD+NI P  + +VFP+ML+CGG+VT  D K       Y+ P+   + + +T+ RI I + VG  I I WAVVLV S+ L     +      LF+  +RIGSII+GGGQ
Sbjct:  109 LVVSTALARAGPVGGLLAFFLWNLPGLIVLTTCGVLIKEFINPDDPPFYLIGLPPAAISLVFKAFYGFGLKLD--QLGIALATFSCIIAILLNGDDNIEPTATQYVFPIMLLCGGLVTYFDSKRENPWGTYKTPKGWDKEDDKTFKRIGISVPVGIFIWIVWAVVLVASIVLVDVGDVDNEYLQLFEKMYRIGSIIFGGGQ 307          
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: A0A485L153_9STRA (Aste57867_14606 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L153_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.140e-33
Identity = 83/204 (40.69%), Postives = 114/204 (55.88%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLGDNDPDWLSGVGPAAVSLVFVAAYKLGKKV-NSTKLKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTLVD--WKYRPEAELELEGRTYS-----RINIPMWVGCVIVIGWAVVLVGSLTLFPE--------SGLGALFKAFFRIGSIIYGGGQ 564
            +V SMG +RAG  GGLL+F +W  P F+I+ LAGLG +  LG+  P W+ G+ PAAVSLV +AA KL  K     ++K  ++ VS CV L        + K+  W+FP +++ GG+ TL    + Y         G   +      + IP WVG VI++ WAV    +L+ F          S LG LF AFFR+GSII+GGGQ
Sbjct:   84 VVSSMGLFRAGPLGGLLAFVIWCLPGFVIMTLAGLGAQHYLGNGLPSWMIGLAPAAVSLVIIAATKLWTKACGDDQVKMAIATVSACVVLS-------TQKLGTWIFPALMIAGGLTTLAAPLFGYTKSFVKASRGGVINPLVQRELGIPAWVGVVIILAWAVAF-ATLSYFDSVVRHALGRSFLG-LFYAFFRMGSIIFGGGQ 278          
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: A0A067CUR6_SAPPC (Uncharacterized protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CUR6_SAPPC)

HSP 1 Score: 133 bits (334), Expect = 2.560e-33
Identity = 77/202 (38.12%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLGDNDPDWLSGVGPAAVSLVFVAAYKLGKKV-NSTKLKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTLVDWKY---RPEAELELEGRTYS-----RINIPMWVGCVIVIGWAVVLVGSLTLFPESG-LG----ALFKAFFRIGSIIYGGGQ 564
            ++ SMG +RAG  GG+L+F +W  P F++++LAGLG ++ LG   P W+ G+ PAAVSLV +AA KL +K     +LK +++ +S+CV L   G       +  W+FPL+++ GG  TL         P    + +   +S      + IP W G ++++GW     G L     +G LG     LF AFFR+GSII+GGGQ
Sbjct:   84 VLTSMGIFRAGPLGGILAFLVWTAPGFLVMLLAGLGAQEYLGAGVPLWMVGLAPAAVSLVIIAATKLWQKACGDDQLKMSIAAISSCVVLATQG-------LGTWIFPLLMIAGGFTTLSAMALGYPNPLVAAKRQDNGHSPHFERELGIPAWAGVLLILGWLAAF-GLLAYLDSTGTLGRSYLGLFYAFFRMGSIIFGGGQ 277          
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: A0A6T7FFJ8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7FFJ8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.490e-32
Identity = 84/202 (41.58%), Postives = 111/202 (54.95%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLG-DNDPDWLSGVGPAAVSLVFVAAYKLGKKVNSTKLKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTLVDWKY-RPEAELELE--------GRTYSRINIPMWVGCVIVIGWAVVLVGSLTLFP----ESGLGALFKAFFRIGSIIYGGGQ 564
            +VVS  T RAG  GGL++F LW  P  +IL + G+ +   +  DN P +L G+ PAA SLVF A Y    K++  KL   LS+ S  V + INGD NI  KVS WV+P ML  GG+VT  D +  +P +E             R   RI IP+WVG  I   W  +LV  + L      E+    +F+  +RIGSII+GGGQ
Sbjct:  122 LVVSTATSRAGPLGGLVAFFLWTLPGLVILTVCGVLIETFVDQDNAPFYLIGLPPAATSLVFKAFYGFSTKLD--KLGIFLSMCSGMVAILINGDYNIDVKVSQWVYPTMLAVGGLVTYTDSRREKPFSEYTKSKKGWDVQSDRLMKRIGIPLWVGAAIAGVWLFLLVSCILLVDVFKVENTYLGIFEVMYRIGSIIFGGGQ 321          
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: B7G7I4_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7I4_PHATC)

HSP 1 Score: 130 bits (328), Expect = 3.260e-32
Identity = 82/202 (40.59%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLGDNDPDW-LSGVGPAAVSLVFVAAYKLGKKVNSTKLKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTLVDWKY-RPEAELELEGR--------TYSRINIPMWVGCVIVIGWAVVLVGSLTLFPESGLG----ALFKAFFRIGSIIYGGGQ 564
            +V+S    RAG  GGLL+F LWN P  IIL L G  +   +  N P W L G+ PAA+SLVF A Y    K++S  L   L+L S  V + +N D++I P  S WVFP  L  GG+VT +D K  +P A     G+        T  RI IP+WVG +I + W  +L+  + L   + +      +F+  +RIGSII+GGGQ
Sbjct:  124 LVISTALSRAGPLGGLLAFFLWNLPGLIILTLCGALIDAFVDPNSPPWYLIGLPPAAISLVFKAFYGFAIKLDS--LGIILALCSCLVAIVLNNDDDIDPASSQWVFPTTLALGGLVTYLDSKREKPFATYASPGKGWDKDSDETMKRIGIPLWVGALIFLLWLGILILVIILVDVAEVDNVYLKIFETMYRIGSIIFGGGQ 323          
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: A0A7S2YB08_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YB08_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.960e-32
Identity = 77/203 (37.93%), Postives = 114/203 (56.16%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLGDNDPDW-LSGVGPAAVSLVFVAAYKLGKKVNSTKLKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTLVDWK----YRPEAELELEG------RTYSRINIPMWVGCVIVIGWAVVLVGSLTLFPESGLG----ALFKAFFRIGSIIYGGGQ 564
            +V+S  T RAG  GGL++F LWN P  I+L   G+ + + +  ++  W L+G+ PAA+SLVF A Y    K++S  L+  ++L S+ V + IN D NI P  S WVFP  L  GG+ T +D K    +    +   +G       T+ RI IP+WVG +I + W  VL   + L   + +      +F+  +RIGSII+GGGQ
Sbjct:  134 LVISTATSRAGPLGGLMAFFLWNLPGLIVLTCCGVLIDEFVNPDEAPWYLAGLPPAAISLVFKAFYGFASKLDS--LQIWMALCSSLVAILINNDANIKPSSSQWVFPCCLALGGLTTYIDSKRANPFSTYTKSPSKGWDRDDDTTFKRIGIPLWVGALIFLVWGGVLALVIILVDVAEVTNVYLEIFETMYRIGSIIFGGGQ 334          
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Match: A0A1V9ZB66_9STRA (Chromate Ion Transporter (CHR) Family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB66_9STRA)

HSP 1 Score: 129 bits (323), Expect = 8.190e-32
Identity = 75/200 (37.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:    1 MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLGDNDPDWLSGVGPAAVSLVFVAAYKLGKKV-NSTKLKFTLSLVSTCVTLFINGDENISPKVSAWVFPLMLVCGGIVTLVDWKYRPEAELELEGRTYS-------RINIPMWVGCVIVIGWAVVLVGSLTLFPESGLG----ALFKAFFRIGSIIYGGGQ 564
            ++ SMG +RAG  GG+L+F  W  P F++++ AGLG ++ LG   P W++G+ PAAVSLV +AA KL +K      LK  ++ VS+CV L   G       +  W+FPL+++ GG+ T+          L    R +         + IP+WVG  ++ GW         L     LG     LF AFFR+GSII+GGGQ
Sbjct:   81 VLTSMGIFRAGPLGGILAFVTWMLPGFLVMLFAGLGAQEYLGGGVPVWMAGLAPAAVSLVIIAAVKLWQKACGDDSLKMAIAGVSSCVVLATQG-------LGTWIFPLLMLLGGLTTVAASAAGYAKPLIAPKRGHGGSPHFERELGIPLWVGAALIAGWIAAFGLLAYLDTTHALGHHYLGLFYAFFRMGSIIFGGGQ 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19031.5248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM24_ECTSI1.340e-9778.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5G6L9_9STRA7.670e-4044.50Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S3UPW9_HETAK9.330e-4059.84Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2KXW7_9STRA2.350e-3641.79Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A485L153_9STRA1.140e-3340.69Aste57867_14606 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CUR6_SAPPC2.560e-3338.12Uncharacterized protein (Fragment) n=2 Tax=Saprole... [more]
A0A6T7FFJ8_9STRA1.490e-3241.58Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7G7I4_PHATC3.260e-3240.59Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S2YB08_9STRA5.960e-3237.93Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1V9ZB66_9STRA8.190e-3237.50Chromate Ion Transporter (CHR) Family n=1 Tax=Achl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19031contigH-elongata_contig19031:4997..7099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.8
Seed ortholog evalue4.8e-79
Seed eggNOG ortholog2880.D7FM24
KEGG koko:K07240
KEGG TC2.A.51.1
EggNOG free text desc.Chromate transporter
EggNOG OGs2QRJG@2759,COG2059@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionChromate transporter
Ec32 orthologEc-01_010380.1
Exons3
Model size612
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19031.5248.1prot_H-elongata_contig19031.5248.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19031 4997..7099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.0113502-CDS-H-elongata_contig19031:4996..52301622930088.0113502-CDS-H-elongata_contig19031:4996..5230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19031 4997..5230 -
1691679275.9021025-CDS-H-elongata_contig19031:4996..52301691679275.9021025-CDS-H-elongata_contig19031:4996..5230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19031 4997..5230 -
1622930088.0265868-CDS-H-elongata_contig19031:5969..61491622930088.0265868-CDS-H-elongata_contig19031:5969..6149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19031 5970..6149 -
1691679275.9136815-CDS-H-elongata_contig19031:5969..61491691679275.9136815-CDS-H-elongata_contig19031:5969..6149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19031 5970..6149 -
1622930088.045974-CDS-H-elongata_contig19031:6901..70991622930088.045974-CDS-H-elongata_contig19031:6901..7099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19031 6902..7099 -
1691679275.930753-CDS-H-elongata_contig19031:6901..70991691679275.930753-CDS-H-elongata_contig19031:6901..7099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19031 6902..7099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19031.5248.1

>prot_H-elongata_contig19031.5248.1 ID=prot_H-elongata_contig19031.5248.1|Name=mRNA_H-elongata_contig19031.5248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
MVVSMGTYRAGIPGGLLSFALWNTPSFIILVLAGLGVRDLLGDNDPDWLS
GVGPAAVSLVFVAAYKLGKKVNSTKLKFTLSLVSTCVTLFINGDENISPK
VSAWVFPLMLVCGGIVTLVDWKYRPEAELELEGRTYSRINIPMWVGCVIV
IGWAVVLVGSLTLFPESGLGALFKAFFRIGSIIYGGGQASDTWHGSRTRR
ISR*
back to top

mRNA from alignment at H-elongata_contig19031:4997..7099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19031.5248.1 ID=mRNA_H-elongata_contig19031.5248.1|Name=mRNA_H-elongata_contig19031.5248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2103bp|location=Sequence derived from alignment at H-elongata_contig19031:4997..7099- (Himanthalia elongata Himel1 dioecious)
ATGGTGGTGTCCATGGGGACGTATCGAGCGGGAATCCCCGGGGGTCTCCT CTCCTTCGCGCTGTGGAACACCCCGAGCTTCATCATCCTCGTCCTGGCTG GGCTCGGCGTCAGGGATCTCCTCGGCGACAATGACCCTGACTGGCTGTCC GGCGTGGGTCCCGCCGCGGTCTCGCTCGTATTCGTGGCGGCCTACAAGGT TTGTCGAATCCGATGCTTGAGCTGAAGCATTATCTAGGGGGAGGGAGTGT TCGATGGCCGCGTCTTGAACGTCTTTTGAAGGCGACTTCCTCTCGAGAGA GACAGTCTAATCGGCCACCGTCTCGGTTGGAAACCCCGCCGAGGCGAGGC AAGGGTGGGCGTTTTAAACTTACATCGGTTGTTAATGTTGTCATTTATCT TCATTTGGATATTAGTCACTTTACGTCCTCTCGCACCGCCGTTTCTCGCG CGCCGCCCCAACGTACACGCCCCAGTAAAACCTTTATCATCTTCCTCCCT CCCGTCCCGACCAAATCGAACCAAAAGTGGGAGCAAGGAAAATTATGTTA CATATCAAGGTCGGGAACGCCTTGCACGGCAAGCCTTTTTGTTTTGTTTC GTGAAACCGTGGCGCTCCCCTCTTCTACCCCTCTCCGCTTCCCTTCCCCT CCATAACCAACTCCCTCTCTCCCTCTTCCCTTCCCCTCCCCTCCCCTTCT TAGAACTTCTTATAATGTACTGACCTTCCCTCCAAGATCTAAACCCTTTC ACTCACTACACATCTTTCTCGGCTGCTTCCTCGTCTCGAACTTGTCCCCC TCTCCCCCCGCCTTTCCCCTTCACCAATCCTAATTTCCCCCGCCTTACCT GCTTCATCCTTCCGAGGACGCTTGGTCAACTGCCTAACAGCTAAGGTATG CAAATCGTGACTGCGTCCCCACCCCTATCCCCAACCCCGGTGAAACGCAG CTGGGAAAGAAGGTGAACAGCACCAAGCTGAAGTTCACCCTGTCCCTAGT CTCGACGTGCGTGACGCTGTTCATCAACGGCGATGAGAACATCTCTCCCA AGGTGTCCGCCTGGGTTTTCCCGTTAATGCTAGTCTGCGGCGGCATAGTG ACCCTCGTGGACTGGAAGTACCGACCCGAAGTCTACGCGGCTGCCGGTCG AACTAAAAGTGAGCAGAGCCAAAACCCGCCGGCGTGCACCTACCTTCTGG CCACGGGCCCCGTCAGCGCGCGAATCATTATATTGTATCGTTGCGAGCGC TTCTAATTTCCTAAACTCACCCCGAATGAAAGAAAAAGCGTCGAGTTCCG GTGGGTTACGTAGAGAGATGGAGAATTTTATGGAGAAGTGTGATCTTGAG CCGGCATGTGTATATCGGTACTGACTTCAGCGCAAGGCCTCTCGAGTGGG GAAACCGAGAGCTGCCGAGCCGTGGTCGGCGTCGACCCGATCGATATGAG ACAAACGTTTTGGCGTCCTTTGCGTCCTTTGTTTTTGGCTCCATTCCTTG ATAAGGTTGTATACATCCCCCTTGGGCCGCCCGCCCATCTTGGAAACGGT CTTCTTCTCTGAATACCGAGCCGCAAAGAGGACCTGTGCGCCGACTGACC TCTGCACCCTATCAACCCGCCCTACACGCACTTTTTCCATCTGGGTCCCC GCCACCGAACTGATACCGCTGTTGCCACTGTTGCTGTTACTGCTACTCAC CACATCGCGGCGCCCCTCCTCCCACACCCTTCCCGGCGTAGAAACTCCGC TATGTGTATAGACTATATTACGTCCAATGCTATAATACCGTCTTAACCCA CAACAATGTTGAAATACTTATTTTAAAATGTAAAATGCCGCCCCGACGAA CACAATAATGGCAGCCAAGGCGGAGCTCGAGCTCGAGGGCAGGACCTACT CGAGGATTAACATACCCATGTGGGTAGGCTGCGTGATCGTTATCGGGTGG GCAGTGGTGCTTGTAGGCTCTCTCACTCTCTTCCCGGAATCGGGTCTGGG GGCGCTCTTCAAGGCGTTCTTCCGTATCGGCTCTATCATTTACGGGGGAG GGCAGGCAAGCGACACATGGCACGGGTCTCGAACACGCCGTATCTCACGG TGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19031:4997..7099-

>mRNA_H-elongata_contig19031.5248.1 ID=mRNA_H-elongata_contig19031.5248.1|Name=mRNA_H-elongata_contig19031.5248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig19031:4997..7099- (Himanthalia elongata Himel1 dioecious)
ATGGTGGTGTCCATGGGGACGTATCGAGCGGGAATCCCCGGGGGTCTCCT
CTCCTTCGCGCTGTGGAACACCCCGAGCTTCATCATCCTCGTCCTGGCTG
GGCTCGGCGTCAGGGATCTCCTCGGCGACAATGACCCTGACTGGCTGTCC
GGCGTGGGTCCCGCCGCGGTCTCGCTCGTATTCGTGGCGGCCTACAAGAT
GGTGGTGTCCATGGGGACGTATCGAGCGGGAATCCCCGGGGGTCTCCTCT
CCTTCGCGCTGTGGAACACCCCGAGCTTCATCATCCTCGTCCTGGCTGGG
CTCGGCGTCAGGGATCTCCTCGGCGACAATGACCCTGACTGGCTGTCCGG
CGTGGGTCCCGCCGCGGTCTCGCTCGTATTCGTGGCGGCCTACAAGCTGG
GAAAGAAGGTGAACAGCACCAAGCTGAAGTTCACCCTGTCCCTAGTCTCG
ACGTGCGTGACGCTGTTCATCAACGGCGATGAGAACATCTCTCCCAAGGT
GTCCGCCTGGGTTTTCCCGTTAATGCTAGTCTGCGGCGGCATAGTGACCC
TCGTGGACTGGAAGTACCGACCCGAACTGGGAAAGAAGGTGAACAGCACC
AAGCTGAAGTTCACCCTGTCCCTAGTCTCGACGTGCGTGACGCTGTTCAT
CAACGGCGATGAGAACATCTCTCCCAAGGTGTCCGCCTGGGTTTTCCCGT
TAATGCTAGTCTGCGGCGGCATAGTGACCCTCGTGGACTGGAAGTACCGA
CCCGAAGCGGAGCTCGAGCTCGAGGGCAGGACCTACTCGAGGATTAACAT
ACCCATGTGGGTAGGCTGCGTGATCGTTATCGGGTGGGCAGTGGTGCTTG
TAGGCTCTCTCACTCTCTTCCCGGAATCGGGTCTGGGGGCGCTCTTCAAG
GCGTTCTTCCGTATCGGCTCTATCATTTACGGGGGAGGGCAGGCAAGCGA
CACATGGCACGGGTCTCGAACACGCCGTATCTCACGGTGAGCGGAGCTCG
AGCTCGAGGGCAGGACCTACTCGAGGATTAACATACCCATGTGGGTAGGC
TGCGTGATCGTTATCGGGTGGGCAGTGGTGCTTGTAGGCTCTCTCACTCT
CTTCCCGGAATCGGGTCTGGGGGCGCTCTTCAAGGCGTTCTTCCGTATCG
GCTCTATCATTTACGGGGGAGGGCAGGCAAGCGACACATGGCACGGGTCT
CGAACACGCCGTATCTCACGGTGA
back to top