mRNA_H-elongata_contig190279.5245.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5K9M9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M9_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 2.280e-13 Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
L+Q++K SV L + Q V D+ G+LLR++ I +RW +FF LLN KS L+PDI R+ Q P LG P EE+ A K ++ KA G DSLPA +LK
Sbjct: 4 LYQHLKRSVSLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERMTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGNDSLPAEMLK 111
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JJQ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ9_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 2.620e-13 Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
L+Q++K SV L + Q V D++G+LLR++ I +RW +FF LLN KS L+PDI R+ Q P LG P EE+ A K ++ KA G DSLPA LLK
Sbjct: 4 LYQHLKRSVGLSGRQARGQQFVADEDGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 111
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5J7A9_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A9_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.280e-12 Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
L+Q++K SV L + Q V D+ G+LLR++ I +RW +FF LLN KS L+PDI R+ Q P LG P EE+ A K ++ KA G DSLPA LLK
Sbjct: 4 LYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 111
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG6_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 1.740e-12 Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
L+Q++K SV L + Q V D+ G+LLR++ I +RW +FF L N KS L+PDI R+ Q P LG P EE+ A K ++ KA+G DSLPA LLK
Sbjct: 230 LYQHLKRSVGLSRRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLFNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKALGHDSLPAELLK 337
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JYS1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS1_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 2.330e-12 Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
L+Q++K SV L + Q V D+ G+LLR++ I +RW +FF LLN KS L+PDI R+ Q P LG P EE+ A K ++ KA G DSLPA LLK
Sbjct: 165 LYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 272
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.360e-12 Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
L+Q++K SV L K Q V D+ G+LLR++ I +RW +FF LL+ KS L+PDI R+ Q P LG P EE+ A K ++ KA G DSLPA LLK
Sbjct: 4 LYQHLKRSVGLSGRKAGGQQFVADENGVLLRNRDDILQRWAKFFSTLLDTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 111
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JDS0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS0_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 3.930e-12 Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 34 LFQNI-KSVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
L+Q++ +SV L + Q V D+ G+LLR++ I +RW +FF LLN KS L+PDI R+ Q P LG P EE+ A K ++ KA G DSLPA LLK
Sbjct: 184 LYQHLTRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIVERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 291
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 5.660e-12 Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 1 EKQLRVGNQNKLFQNIKSVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
EK+ R G+Q ++++K + +E + SQ + D++G +LRD IR+RW ++F LLN KS +D ++ + P L P+ E+ A++ + KAVGLD LPA L+K
Sbjct: 29 EKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIK 143
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JQV7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV7_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 8.300e-12 Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 37 FQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
+Q++K SV L + Q V D+ G+LLR++ I +RW +FF LLN KS L+PDI R+ Q P LG P EE+ A K ++ KA G DSLPA LLK
Sbjct: 228 YQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 334
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5L1Q6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q6_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 8.300e-12 Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVAS---ALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
L+Q++K SV L + Q V D+ G+LLR++ I +RW +FF LLN KS L+P I R+ Q P A LG P EE+ A K ++ KA G DSLPA LLK
Sbjct: 250 LYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPHIIERVTQRPAARDTRRLGDVPRLEEVARATKGLKNWKAPGHDSLPAELLK 357 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig190279.5245.1 >prot_H-elongata_contig190279.5245.1 ID=prot_H-elongata_contig190279.5245.1|Name=mRNA_H-elongata_contig190279.5245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp EKQLRVGNQNKLFQNIKSVQLEETKKVKSQCVCDKEGILLRDKGRIRERWback to top mRNA from alignment at H-elongata_contig190279:548..892+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig190279.5245.1 ID=mRNA_H-elongata_contig190279.5245.1|Name=mRNA_H-elongata_contig190279.5245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig190279:548..892+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig190279:548..892+ >mRNA_H-elongata_contig190279.5245.1 ID=mRNA_H-elongata_contig190279.5245.1|Name=mRNA_H-elongata_contig190279.5245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig190279:548..892+ (Himanthalia elongata Himel1 dioecious)back to top |