mRNA_H-elongata_contig19019.5244.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19019.5244.1
Unique NamemRNA_H-elongata_contig19019.5244.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19019.5244.1 vs. uniprot
Match: D8LJV2_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJV2_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 3.090e-128
Identity = 199/319 (62.38%), Postives = 239/319 (74.92%), Query Frame = 3 
Query:   15 DLSKRWGWSEAAHRYYYPLKALGVFSEKNTNALTSGRMLQTCLNNAERKEWYSLGKISNEFLPKLLWLSTNVWLLSRRLLREGERGKRVQELLFDELWRETRRQMRSIQVDEMMLKKYLGEAQQHTFMTLVQYDHAYTLENRDERMEILTGALWRGVYMSNHKIKESHVRVMAEYIDRELADVYDVDAEDFFAVCIEFGLPPPKFGASKQIRGAEKSHDK----------------PRSPAAGSSSVSLGRGSPV-ERIEHGDFG--EAGNGRWRASLAESGKVYYWHTSSRETTWEKPSDSDAFVPTVMPKDKDTTEA 914
            +L ++WGW + +   Y+P K +GVFS KNTNAL+S RMLQTCLNNAE  EWYS GKISNEFLPKLLWLSTNVWL+SRRLLREGERGK+VQELLFDELWRET+RQMRSI+V EMMLKKYL EAQQHTF+TLVQ+DHAYTLE+R+ERM++LT ALWRGVYMS+  IKE HVRV+AEY+D ELAD+Y VDA +FFAVCIEF  PP     + +++ A                      P      + S + GRG  + E++ HGDFG  +   GRWRA LAESGKVYYWHT SRE TW++P+ ++A+VP+VMPK   T  A
Sbjct:   96 ELHEKWGW-KTSDPLYWPYKIMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQFDHAYTLESREERMDVLTSALWRGVYMSDESIKEPHVRVLAEYVDAELADIYAVDASEFFAVCIEFAPPP-----TAELKAAXXXXXXXXXXXXXXXXGTVAAAPGLEGGAADSTAAGRGGGIGEKVHHGDFGSGDGREGRWRACLAESGKVYYWHTVSREVTWDRPAGAEAYVPSVMPKADQTLTA 408
[Close]
BLAST of mRNA_H-elongata_contig19019.5244.1 vs. uniprot
Match: A0A2R5H0B8_9STRA (Ubiquinol-cytochrome-c reductase complex assembly factor 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0B8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.970e-25
Identity = 81/294 (27.55%), Postives = 135/294 (45.92%), Query Frame = 3 
Query:   18 LSKRWGWSEAAHRYYYPLKALGVFSEKNTNALTSGRMLQTCLNNAE----------RKEWYSLGKISNEFLPKLLWLSTNVWLLSRRLLREGERGKRVQELLFDELWRETRRQMRSIQVDEMMLKKYLGEAQQHTFMTLVQYDHAYTLENRDERMEILTGALWRGVYMSNHKIKESHVRVMAEYIDRELADVYDVDAEDFFAVCIEFGLPPPKFGASKQIRGAEKSHDKPRSPAAGSSSVSLGRGSPVERIEHGDFGEAGNGRWRASLAESGKVYYWHTSSRETTWEKPSDSDA 869
            L+KR+GW+         L+ LG +S+++ +      + ++C   A+            +W  +      F P+      +VW++ RRLL E E G+ +QE LFD  W +T R +R+  V E+ + K+L E Q+  F   + YDH   + N DE +E L  ALWR VY S+  I +  V  +AEY+  +++ +  +D E  F                 ++   E S                 R S ++ +            WR +LA  G+ Y+W+  +RET+W+KP +S+A
Sbjct:   20 LTKRYGWA---------LRLLGFYSKESRDLRHGQALYRSCEEQAQIANKDLSFGLNMDWLDV----QNFHPRQQLTMLHVWMVHRRLLAEDEGGRDLQEALFDACWEQTTRYVRATGVHELTVNKHLSEVQKKCFAAAISYDHGLNITN-DENLE-LGSALWRNVYQSDESIPDECVFRLAEYVRNQVSSLERLDRETVFEA---------------KLSWLELS----------------ARPSTLDSL------------WRPALAADGRTYWWNVETRETSWQKPDESEA 255
[Close]
BLAST of mRNA_H-elongata_contig19019.5244.1 vs. uniprot
Match: F0WM81_9STRA (Uncharacterized protein AlNc14C153G7585 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM81_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.840e-19
Identity = 78/277 (28.16%), Postives = 120/277 (43.32%), Query Frame = 3 
Query:   24 KRWGWSEAAHRYYYPLKALGVFSEKNTNALTSGRMLQTCLNNAERKEWYSLGKISNEFLPKLLWLSTNVWLLSRRLLREGERGKRVQELLFDELWRETRRQMRSIQVDEMMLKKYLGEAQQHTFMTLVQYDHAYTLENRDERMEILTGALWRGVYMSNHKIKESHVRVMAEYIDRELADVYDVDAEDFFAVCIEFGLPPPKFGASKQIRGAEKSHDKPRSPAAGSSSVSLGRGSPVERIEHGDFGEAGNGRWRASLAESGKVYYWHTSSRETTWEKP 854
            K W W             LG  ++ +     S ++LQ+C+N +   E Y   ++  +F  +   L  +VWL+ RRL +EG+ G+ +QEL+FD LW ET  ++R  QV E+ + KYL + QQ  F   V YD        D    I    L +     +H   E HVR   EYI + +  +  +D +      I +   P K    KQI                   V +G+           FG     +WR +L   G++YYW++ SR + W+ P
Sbjct:   45 KSWNWL---------FNLLGYNNQDDKMYRESTKVLQSCVNQSAVPELYQAIRLRPDFRGQQALLMVHVWLIHRRLAKEGDAGRVLQELVFDRLWEETVLRIRHQQVSELTVNKYLKQVQQVCFNACVAYDKGLERSKTDFNTAIRCHLLAQD---DSHSPDEDHVRATYEYIQQNMQMLEKLDEKYLMKGVIPWAQAP-KVSDLKQI-----------------DIVLIGQ----------KFG-----KWRTALDIRGQMYYWNSESRLSAWKLP 276
[Close]
BLAST of mRNA_H-elongata_contig19019.5244.1 vs. uniprot
Match: A0A484DVK9_BRELC (WW domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVK9_BRELC)

HSP 1 Score: 95.9 bits (237), Expect = 1.390e-18
Identity = 72/266 (27.07%), Postives = 124/266 (46.62%), Query Frame = 3 
Query:   78 LGVFSEKNTNALTSGRMLQTCLNNAERKEWYSLGKISNEFLPKLLWLSTNVWLLSRRLLREGERGKRVQELLFDELWRETRRQMRSIQVDEMMLKKYLGEAQQHTFMTLVQYDHAYTLENRDERMEILTGALWRGVYMSNHKIKESHVR------VMAEYIDRELADVYDVDAEDFFAVCIEFGLPPPKFGASKQIRGAEKSHDKPRSPAAGSSSVSLGRGSPVERIEHGDFGEAGNGRWRASLAESGKVYYWHTSSRETTWEKPS 857
            LG  +E +     S  + Q+C+N+  + ++Y    +   F  +   L  +VWL+ RRL  EGE+GK +QEL+FD LW ET  ++R + + E+ + KYL + QQ  F   + YD             +  G  +    ++ H ++           +MAE++ REL ++  VDA+      I +  P P+            +H K R P      V +G     +R           G WR++L   GK+Y+W+ ++R + W++P+
Sbjct:    2 LGFLNEDDRLFRHSSAVFQSCMNHTAQPDYYRALGLPQSFRAQQAILMAHVWLVHRRLALEGEKGKIMQELVFDRLWEETVVRIRYLNISELTVNKYLAQVQQICFNACIAYDKG-----------LKEGPRYFQTAVAQHLLENESTEGLRIASIMAEHMKRELKNLEKVDAKYIMLGTIPW-TPLPE------------THAKIR-PTDVDDVVLIG-----QRF----------GNWRSALDNRGKLYFWNITTRYSIWDRPT 227
[Close]
BLAST of mRNA_H-elongata_contig19019.5244.1 vs. uniprot
Match: A0A024GN83_9STRA (WW domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GN83_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.280e-13
Identity = 72/278 (25.90%), Postives = 115/278 (41.37%), Query Frame = 3 
Query:   24 KRWGWSEAAHRYYYPLKALGVFSEKNTNALTSGRMLQTCLNNAERKEWYSLGKISNEFLPKLLWLSTNVWLLSRRLLREGERGKRVQELLFDELWRETRRQMRSIQVDEMMLKKYLGEAQQHTFMTLVQYDHAYTLENRDERMEILTGALWRGVYMSNHKIKESHVRVMAEYIDRELADVYDVDAEDFFAVCIEFGLPPPKFGASKQIRGAEKSHDKPRSPAAGSSSVSLGRGSPVERIEHGDFGEAGNGRWRASLAESGKVYYWHTSSRETTWEKPS 857
            K W W             LG  +  +     S ++LQ+C+N +     Y   ++  +F  +   L  +VWL+ RRL ++GE G+ +QE +FD LW ET  ++R  +V E+ + KYL + QQ  F   + YD        D    I    L        H   E +V++ + Y+ + +  +  +D        I +   P   G  KQ+                   V +G+           FG      WR +L   GK+YYWH+ SR + WE P+
Sbjct:   66 KSWNWL---------FNLLGYNNNDDKLYRESVKLLQSCVNQSAVPNLYHAIRLRPDFRGQQALLMAHVWLVHRRLGKQGEAGRVLQEGVFDRLWEETVSRIRHQKVSELTVNKYLKQVQQVCFNACIAYDTGLERSKDDFNTAIRCHLLAED---DLHVPDEQYVQMTSTYLWQNMKMLDKLDERYLMKGVIPWDHVPDIAGF-KQL-----------------DVVLIGQ----------KFGN-----WRTALDNCGKMYYWHSESRLSAWELPA 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19019.5244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJV2_ECTSI3.090e-12862.38WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A2R5H0B8_9STRA1.970e-2527.55Ubiquinol-cytochrome-c reductase complex assembly ... [more]
F0WM81_9STRA1.840e-1928.16Uncharacterized protein AlNc14C153G7585 n=1 Tax=Al... [more]
A0A484DVK9_BRELC1.390e-1827.07WW domain-containing protein n=1 Tax=Bremia lactuc... [more]
A0A024GN83_9STRA1.280e-1325.90WW domain-containing protein n=1 Tax=Albugo candid... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19019contigH-elongata_contig19019:448..5263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.4
Seed ortholog evalue4.7e-95
Seed eggNOG ortholog2880.D8LJV2
KEGG koko:K17662
EggNOG free text desc.Ubiquinol-cytochrome C chaperone
EggNOG OGs2CZHZ@1,2SAFG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons7
Model size1986
Cds size792
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.3758187-UTR-H-elongata_contig19019:447..5721622930087.3758187-UTR-H-elongata_contig19019:447..572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19019 448..572 +
1691679275.6139112-UTR-H-elongata_contig19019:447..5721691679275.6139112-UTR-H-elongata_contig19019:447..572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19019 448..572 +
1622930087.5301547-UTR-H-elongata_contig19019:4194..52631622930087.5301547-UTR-H-elongata_contig19019:4194..5263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19019 4195..5263 +
1691679275.7161982-UTR-H-elongata_contig19019:4194..52631691679275.7161982-UTR-H-elongata_contig19019:4194..5263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19019 4195..5263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.3951683-CDS-H-elongata_contig19019:572..6021622930087.3951683-CDS-H-elongata_contig19019:572..602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 573..602 +
1691679275.625343-CDS-H-elongata_contig19019:572..6021691679275.625343-CDS-H-elongata_contig19019:572..602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 573..602 +
1622930087.4170086-CDS-H-elongata_contig19019:1807..19121622930087.4170086-CDS-H-elongata_contig19019:1807..1912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 1808..1912 +
1691679275.6426268-CDS-H-elongata_contig19019:1807..19121691679275.6426268-CDS-H-elongata_contig19019:1807..1912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 1808..1912 +
1622930087.4373784-CDS-H-elongata_contig19019:2244..23251622930087.4373784-CDS-H-elongata_contig19019:2244..2325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 2245..2325 +
1691679275.6569226-CDS-H-elongata_contig19019:2244..23251691679275.6569226-CDS-H-elongata_contig19019:2244..2325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 2245..2325 +
1622930087.4626446-CDS-H-elongata_contig19019:2566..26351622930087.4626446-CDS-H-elongata_contig19019:2566..2635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 2567..2635 +
1691679275.6721582-CDS-H-elongata_contig19019:2566..26351691679275.6721582-CDS-H-elongata_contig19019:2566..2635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 2567..2635 +
1622930087.4800003-CDS-H-elongata_contig19019:3076..32441622930087.4800003-CDS-H-elongata_contig19019:3076..3244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 3077..3244 +
1691679275.6815124-CDS-H-elongata_contig19019:3076..32441691679275.6815124-CDS-H-elongata_contig19019:3076..3244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 3077..3244 +
1622930087.4983437-CDS-H-elongata_contig19019:3485..37131622930087.4983437-CDS-H-elongata_contig19019:3485..3713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 3486..3713 +
1691679275.689547-CDS-H-elongata_contig19019:3485..37131691679275.689547-CDS-H-elongata_contig19019:3485..3713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 3486..3713 +
1622930087.5138936-CDS-H-elongata_contig19019:4083..41941622930087.5138936-CDS-H-elongata_contig19019:4083..4194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 4084..4194 +
1691679275.7020564-CDS-H-elongata_contig19019:4083..41941691679275.7020564-CDS-H-elongata_contig19019:4083..4194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19019 4084..4194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19019.5244.1prot_H-elongata_contig19019.5244.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19019 573..4194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19019.5244.1

>prot_H-elongata_contig19019.5244.1 ID=prot_H-elongata_contig19019.5244.1|Name=mRNA_H-elongata_contig19019.5244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MLQTCLNNAERKEWYSLGKISNEFLPKLLWLSTNVWLLSRRLLREGERGK
RVQELLFDELWRETRRQMRSIQVDEMMLKKYLGEAQQHTFMTLVQYDHAY
TLENRDERMEILTGALWRGVYMSNHKIKESHVRVMAEYIDRELADVYDVD
AEDFFAVCIEFGLPPPKFGASKQIRGAEKSHDKPRSPAAGSSSVSLGRGS
PVERIEHGDFGEAGNGRWRASLAESGKVYYWHTSSRETTWEKPSDSDAFV
PTVMPKDKDTTEA*
back to top

mRNA from alignment at H-elongata_contig19019:448..5263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19019.5244.1 ID=mRNA_H-elongata_contig19019.5244.1|Name=mRNA_H-elongata_contig19019.5244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4816bp|location=Sequence derived from alignment at H-elongata_contig19019:448..5263+ (Himanthalia elongata Himel1 dioecious)
CAGCTCGACATCCCGACCTAAGCAAAAGATGGGGCTGGTCCGAAGCGGCG
CATCGGTATTACTATCCTCTCAAGGCCCTTGGCGTTTTTTCCGAGAAGAA
CACGAACGCGCTGACATCGGGGCGCATGCTGCAGACGTGCCTCAACAACG
CCGAGGTAAAAATATATTAGGGTGACTAAGAAAGGAAAGAAGAAAAACAC
ACGCACTCAGATACACACACACACACGTACATACACATCAAAAACAAAAA
CAAAACAAATAGTTATTGGAGAACAGCCAACATACAACCTTTTGGCTGAT
TAGAGCAGGGGGTGGTCTAGTGTCTGGAAATGACTAAACGGACCTGACTT
TTTTTAGCCCCGGTTCCCGAGGGTTTCTACACAATGCATGTTCGTTTCTT
TAGAGCAGCCTCGGGAACCACATATATCATATAGTACAGGACAACAGGCA
CCCACACCCAAATCCACGCACCAGACCTAACCCGACCCTAATCATAATTC
AAACCTACACCGAAATCAAAGTTTATAGATGCTACAGGTGCTGGACTGAG
TTTTAAATCAAATGCCTGCATGTTCGTTTTTGGTGGATTTGTTCAGGAGC
AGGCGAGTAGAGCAGCCTCGGGAACCACAGAGAGCATATAGTACTGGACA
ACAGACATCCATACCCCAAACTATGTAACAGACCCAACCGGACCCTAACC
CAAACCCACACCCAAATCAAGGTTTACCGTTGCTATATTTGCTGGGCTGA
GTTTGCTCTTGGAGTTGAAATCAAATGCCACAATATTATTGCCTCCTTGA
TGGCCACCCCAGCAGCTGTATTGTAGCAGTTATACATTTTGAGTTGGATG
TGGGTTTGGGTTAGGGTCGGGTTGGGTCCAACTTCTATGTTGGTGTGGGT
TTGGGTTATGATCGGGTTGGGTCCGCTAAAAAACTTAGGTAAGAGCTACC
CTGGTACTCATTGTAAGTAAGAGAGCCAAAAGCCAGGTCCGTTTGCAAAC
GGACCTTGAAAGGTCTGTTTAGTTAAACGCCTAATGTCTCGAGGGGCGAC
GCAAATCGCGTTTGCACCTAATATCTCTGAACGCTGCGACGCGGTGTATG
ATGGCTCTTTTCTCGAGAGTCTGGAGGATGGGTCGGCGCGCCGTTGAACT
CTGCCAAAACTGGTTAATGCCGTCATGGGAAGGAAGTAGGATATATTATT
TTCAGAACCGTACCGAATCGCGAGAAGCTTTCGTGGGTCGCCGAGACGAC
TTCACATCCCTCAAGTACCGTACGTACTCTATGCAGCGCCCTTGCTGAAG
CCTTCAAATTTACGTATTTTGCTCTCCAAATCCGAAACACAACCCTCCCC
ATTTCTTTAGCGCAAGGAATGGTACTCGCTCGGCAAGATCAGCAACGAGT
TCCTTCCGAAGCTCTTGTGGCTTAGCACTAACGTATGGCTGCTCTCCCGC
AGACTTTTGCGTGAGGTGAGGTGTGACGTGACAGTACCCTCCTTTGTTTG
TTTGAGTTGTGCTCGTAACGATTCCTTGCGATATGTTCGGCTCACCCACC
GCCTTCGAAGATATAGAAGCACTGGTGTAGAGGACATACATATTAACTTG
TCACTTGTGGTTTAGCTGCATCGCGACAATGGATGTTGCTGATCGCATCA
CTTAGTTCGCACGGCGCACTCTCCACCAAAACAGTCTGGTAACCTGTGCC
AAAACCGTTTGGTAACCTCTACGTAATCTTTTGATCACGCGTTGAAACCG
CTCTCGATGCGTTTGCTCCCGAATGTTTCGTTCCCTGCTCTTGGCAGGGC
GAGCGAGGCAAGAGGGTCCAGGAGTTGCTGTTTGACGAGCTTTGGCGTGA
GACACGGCGGCAGATGCGTTCCATTCAGGTGATGCCCTTGTTCGCAGTGA
TAATAACGCGAGAGGTGTAGGTGCTTCTCATTCGAGTCGTTATTTCCATA
TTCTGTACGAGAGACGAAATCGACAATCCGCCGCTTGAGGCAGGCAGCGT
AGGTTACAATATACAACTTCAATTGCGTTGTTTGGCCGACTAGGGCTTGT
TGTTGCGCCCCCAACCTCTACCCGGTACAATGAGTCGCACCTTCTCCTTT
GTCGCGATCGTTCTGTCAGGTCGATGAGATGATGCTTAAGAAGTATCTCG
GTGAGGCTCAGCAGCACACGTTCATGACGCTCGTTCAGGTGATGACATCG
ATTGCGCTCAGACCAATGGCCAATCGTATGAATGACACGACTAACGATCC
AACCTAAGCGGCCCAACATATATGAAACATTTAACAGTAGGCCTCTTTCT
TGTTGTTCACGCTGAGTGTAGTTGTTTTTTTGCGTACATTTTGTACTTCG
CGAACCCTGCTCGCGCAGAATCACAGACCCTTCGATCGGCGCCTGACGTC
AGAGATAGCCGAGTGATCCGCACTACCACCGAGTCCTCGCTCGTGTGCTA
GGCGAAAGAGCGCAGGCGTACGTTCTCCCAATCCTCCCATATCGAGTCTT
TGCATCCATGGACCATATCGCGAAGGATTCTATCTCGCTGTAGGACGCAA
ACTAAGCCGCGTTTCCTCATCTGTGCCGCACCACCGGCCGCCCTCGTTAA
TTTCCCCCCTCCCGCCCCTGGCTTTGCAGTACGATCACGCCTACACGTTG
GAAAACCGAGACGAGCGGATGGAGATCCTGACTGGTGCCTTATGGCGAGG
GGTGTACATGAGTAACCATAAAATAAAGGAGTCACATGTGCGGGTCATGG
CAGAGTACATAGACCGGGAGCTCGCCGATGTCTACGACGTAGACGCGGTG
AGATTATTGTGTACTAAATATTTTTTTTCTGCCTTGCTCTTGTTGCATGA
AAAAGAGCGCTTGGGGTCGGTTCCCATCGTTAATTTCTTGCCGTTTGAGC
CACCCTTCCTACGCCACCGAAGATATCGAAATATCAAAATTAATTGTGCG
GCTTCTCTTCATAAGTTATGTTGTGTCATTTCCACGCCGCGGGTAATATA
AACACCTTCTCCACGCCCGACACCCCCTCTGCGACCAGGAAGATTTCTTC
GCGGTATGTATCGAATTCGGGCTGCCCCCGCCGAAGTTCGGAGCCTCGAA
GCAGATCCGAGGCGCCGAAAAATCACATGATAAGCCCAGATCACCAGCAG
CGGGATCGTCCTCTGTGAGTCTGGGGCGCGGCTCGCCTGTGGAGCGTATT
GAGCACGGAGACTTTGGCGAGGCTGGCAATGGCAGGTGGCGCGCTTCCTT
GGCCGAGAGCGGAAAGGTGGGTTCGTGTCCCGTAAACGGGGCGAGTGTTG
TGTGCGATTGAAAATACATCACGTCACAGCCACCTCCGCCTGATGGCGAT
AGTGACGACTGGATCCAATGGAATGTGAAGCATGTGCAATTAAACCTCTC
GCATTTACCGTGTGCCACCGCTGTGGGCATTTTTTTTTTGCGCGGGATAT
AGAGTTGGCAGCCACCTTTCCTCCTCGTACAATGCGAGCGATTTGGCACG
ATGGTGGTGTTTAGGTTAAAATTTGTCGCATACCTATATTTTATACATTT
CGGACGCGTCTCACCGTTTACGCATACCGTCGCAATACATCCCGTCTTGC
GGCCAACTTTGTGCGTGCACGGGTGAAAATATGAAGGTGTACTACTGGCA
CACGTCGTCAAGAGAGACTACTTGGGAAAAGCCGTCCGACAGTGATGCTT
TCGTGCCAACCGTCATGCCCAAGGACAAGGACACGACAGAGGCATAAATT
TCGTAAATTTGACAGCTATAAAACTACGGACCTATGTCGATCCAATTAGT
TCAGCTCAAACGCCCGGTGCGTGTTGTTCTAGGTCGCTACAGTTGGCAGT
TGCCCGCGCGAGTGTTCTCGTGGTAAGGCTTTGAACTCGTCGCGGGTGGA
TCTACCGGTACGCATCTGCACACTTCCCGCACGATCGAGTCGTGTGGGCT
TGGAGACACAATAGGCGCCCACAGAATGAATGGTGTTGGATCAGACGGCA
CACCCTCTTGTGTTAATTTTTGAAGCGCGGGATGAAGAAAGCTTTGGAAT
CGATTGTCGGTGGGAAAATTCCAACTCGTGTTTGGAGACGGACTGTGAAA
TAGGACAGCCGGCTTGCTTTAGCCCGTTTACTGTGCTTCTGATGTCAAAT
TCACGTACCGTAGGCGTTTTCGTGGTGCGGCGAGGGTCGATGTGCCGTTT
CAAATTTTGATGGTAAACGCGCGGAGGTCGTTCCGACACTCATGTAGTCA
GAATTCAATGCTATAGTCCAAAGACTATAGTCCAAAGTAACTGCAACATA
GCACCGAGGATGGAAGAGGCGATTATTTCGTTCTGGCGACTCCGAAGGTT
TGCATCTGTATATGTACCTGCGCACCTACTCGCCACTCCTTGATTCAAGG
GATACCATACCATACCCCGTTTATGAAGCCGCTACAGGATAATATTAAGT
AATAATGCAGCATGCGTCGGTCGTGCTCGGTCTGTCCCAGGTCTTGTGCG
AGTCGGGCTCCGTTTTTATCTGGGATTCGGCATACACATGGTTTACACGT
TTATTTATGTATCTTGTGTAAAGAGTTCCAAGTGCTGACGCTCTTCTCCT
TGAAAAAGCACAGCTTTTCTAATGTGCGGTTGAGCCATGCATTGACGACT
GACGCGGGGTGATATTATGTTTTCTTCAGTAAAGTTGTCGGTTGACAATA
GTTGAACCCCTTGACGGATACGTCAAGGACACGTCCCAATTCTTAAACTA
GTATATTTCCATAAATACGCTTTGACGCACTGTCAAGAACATGCCAACCG
ACAACGTGTTCTTCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19019:448..5263+

>mRNA_H-elongata_contig19019.5244.1 ID=mRNA_H-elongata_contig19019.5244.1|Name=mRNA_H-elongata_contig19019.5244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig19019:448..5263+ (Himanthalia elongata Himel1 dioecious)
ATGCTGCAGACGTGCCTCAACAACGCCGAGATGCTGCAGACGTGCCTCAA
CAACGCCGAGCGCAAGGAATGGTACTCGCTCGGCAAGATCAGCAACGAGT
TCCTTCCGAAGCTCTTGTGGCTTAGCACTAACGTATGGCTGCTCTCCCGC
AGACTTTTGCGTGAGCGCAAGGAATGGTACTCGCTCGGCAAGATCAGCAA
CGAGTTCCTTCCGAAGCTCTTGTGGCTTAGCACTAACGTATGGCTGCTCT
CCCGCAGACTTTTGCGTGAGGGCGAGCGAGGCAAGAGGGTCCAGGAGTTG
CTGTTTGACGAGCTTTGGCGTGAGACACGGCGGCAGATGCGTTCCATTCA
GGGCGAGCGAGGCAAGAGGGTCCAGGAGTTGCTGTTTGACGAGCTTTGGC
GTGAGACACGGCGGCAGATGCGTTCCATTCAGGTCGATGAGATGATGCTT
AAGAAGTATCTCGGTGAGGCTCAGCAGCACACGTTCATGACGCTCGTTCA
GGTCGATGAGATGATGCTTAAGAAGTATCTCGGTGAGGCTCAGCAGCACA
CGTTCATGACGCTCGTTCAGTACGATCACGCCTACACGTTGGAAAACCGA
GACGAGCGGATGGAGATCCTGACTGGTGCCTTATGGCGAGGGGTGTACAT
GAGTAACCATAAAATAAAGGAGTCACATGTGCGGGTCATGGCAGAGTACA
TAGACCGGGAGCTCGCCGATGTCTACGACGTAGACGCGTACGATCACGCC
TACACGTTGGAAAACCGAGACGAGCGGATGGAGATCCTGACTGGTGCCTT
ATGGCGAGGGGTGTACATGAGTAACCATAAAATAAAGGAGTCACATGTGC
GGGTCATGGCAGAGTACATAGACCGGGAGCTCGCCGATGTCTACGACGTA
GACGCGGAAGATTTCTTCGCGGTATGTATCGAATTCGGGCTGCCCCCGCC
GAAGTTCGGAGCCTCGAAGCAGATCCGAGGCGCCGAAAAATCACATGATA
AGCCCAGATCACCAGCAGCGGGATCGTCCTCTGTGAGTCTGGGGCGCGGC
TCGCCTGTGGAGCGTATTGAGCACGGAGACTTTGGCGAGGCTGGCAATGG
CAGGTGGCGCGCTTCCTTGGCCGAGAGCGGAAAGGAAGATTTCTTCGCGG
TATGTATCGAATTCGGGCTGCCCCCGCCGAAGTTCGGAGCCTCGAAGCAG
ATCCGAGGCGCCGAAAAATCACATGATAAGCCCAGATCACCAGCAGCGGG
ATCGTCCTCTGTGAGTCTGGGGCGCGGCTCGCCTGTGGAGCGTATTGAGC
ACGGAGACTTTGGCGAGGCTGGCAATGGCAGGTGGCGCGCTTCCTTGGCC
GAGAGCGGAAAGGTGTACTACTGGCACACGTCGTCAAGAGAGACTACTTG
GGAAAAGCCGTCCGACAGTGATGCTTTCGTGCCAACCGTCATGCCCAAGG
ACAAGGACACGACAGAGGCATAAGTGTACTACTGGCACACGTCGTCAAGA
GAGACTACTTGGGAAAAGCCGTCCGACAGTGATGCTTTCGTGCCAACCGT
CATGCCCAAGGACAAGGACACGACAGAGGCATAA
back to top