mRNA_H-elongata_contig190122.5242.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190122.5242.1
Unique NamemRNA_H-elongata_contig190122.5242.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: D8LDX4_ECTSI (Fumarate hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX4_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.360e-39
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 1
Query:    1 QAKGVLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNTA 255
            QA GVLLPGLR+LH AL+AKA EW  VIKIGRTHTQDATPLTLGQEFGGYAAQVEY I+RVE +L SLYRLALGGTAVGTGLNTA
Sbjct:  172 QAHGVLLPGLRELHDALTAKAKEWEKVIKIGRTHTQDATPLTLGQEFGGYAAQVEYGIKRVENTLPSLYRLALGGTAVGTGLNTA 256          
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: E9IJ45_SOLIN (Fumarate hydratase (Fragment) n=1 Tax=Solenopsis invicta TaxID=13686 RepID=E9IJ45_SOLIN)

HSP 1 Score: 128 bits (322), Expect = 1.120e-34
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   13 VLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNTAK 258
            VL+PGL +LH+AL+ KA EW D+IKIGRTHTQDA PLTLGQEF GYAAQVEY I+R++ +L  LY+LALGGTAVGTGLNT K
Sbjct:  118 VLIPGLEELHKALNKKAGEWKDIIKIGRTHTQDAVPLTLGQEFSGYAAQVEYGIKRIKDTLPRLYQLALGGTAVGTGLNTKK 199          
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: A0A0C9R9E1_9HYME (Fumarate hydratase n=4 Tax=Opiinae TaxID=68883 RepID=A0A0C9R9E1_9HYME)

HSP 1 Score: 130 bits (327), Expect = 4.820e-34
Identity = 65/82 (79.27%), Postives = 69/82 (84.15%), Query Frame = 1
Query:   13 VLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNTAK 258
            VLLPGL KLHQAL AKA  W D+IKIGRTHTQDA PLTLGQEF GYA QVEYSI RV+ +L  LY+LALGGTAVGTGLNT K
Sbjct:  172 VLLPGLTKLHQALDAKAKAWKDIIKIGRTHTQDAVPLTLGQEFSGYATQVEYSIARVKDTLPRLYQLALGGTAVGTGLNTKK 253          
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: A0A0D1EJG4_9RHOB (Fumarate hydratase class II n=27 Tax=Rhodobacterales TaxID=204455 RepID=A0A0D1EJG4_9RHOB)

HSP 1 Score: 128 bits (321), Expect = 3.050e-33
Identity = 65/85 (76.47%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    4 AKGVLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNTAK 258
            A+  LLPGLRKLHQAL AK+ E+ D+IKIGRTHTQDATPLTLGQEFGGYA QV   IERVEA L  +Y LA GGTAVGTGLNT K
Sbjct:  156 ARDTLLPGLRKLHQALEAKSDEFKDIIKIGRTHTQDATPLTLGQEFGGYAHQVAKGIERVEACLPDIYELAQGGTAVGTGLNTRK 240          
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: A3K2D2_9RHOB (Fumarate hydratase class II n=13 Tax=Rhodobacterales TaxID=204455 RepID=A3K2D2_9RHOB)

HSP 1 Score: 127 bits (320), Expect = 4.310e-33
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 QAKGVLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNTAK 258
            QA+ VLLPGL+KLH AL AK+ E+ D+IKIGRTHTQDATPLTLGQEFGGYA QV+  IERVE+ L  +Y LA GGTAVGTGLNT K
Sbjct:  155 QARDVLLPGLKKLHAALEAKSNEFKDIIKIGRTHTQDATPLTLGQEFGGYAHQVKKGIERVESCLPDIYELAQGGTAVGTGLNTKK 240          
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: A0A397DNZ1_9STRA (Fumarate hydratase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DNZ1_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.520e-33
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   13 VLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNTAK 258
            VLLPGLRKLH AL AK  E++D+IKIGRTHTQDATP+TLGQEF GY  Q+ YSI+RVEA L +LY+LALGGTAVGTGLNT K
Sbjct:  902 VLLPGLRKLHAALDAKVTEFDDIIKIGRTHTQDATPMTLGQEFSGYREQIAYSIQRVEAVLPNLYKLALGGTAVGTGLNTTK 983          
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: A0A8D8C4D9_CULPI (Fumarate hydratase (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8C4D9_CULPI)

HSP 1 Score: 120 bits (301), Expect = 6.040e-33
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query:   13 VLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNT 252
            VLLPGL+ LH AL+AKA ++ D+IKIGRTHTQDA PL+LGQEFGGY  QV+YSI RV+ASL  +Y LA GGTAVGTGLNT
Sbjct:   75 VLLPGLQTLHDALAAKAEQFKDIIKIGRTHTQDAVPLSLGQEFGGYVQQVKYSIGRVKASLPRVYELAAGGTAVGTGLNT 154          
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: UPI0006256B71 (fumarate hydratase, mitochondrial isoform X1 n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006256B71)

HSP 1 Score: 127 bits (320), Expect = 6.840e-33
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   13 VLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNTAK 258
            VLLPGL++LHQAL  KA EW ++IKIGRTHTQDA PLTLGQEF GYA Q+E+ I+RV+A+L  LY LALGGTAVGTGLNT K
Sbjct:  204 VLLPGLKQLHQALHKKAEEWKNIIKIGRTHTQDAVPLTLGQEFSGYATQIEFGIQRVQATLPRLYMLALGGTAVGTGLNTRK 285          
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: UPI0014307D7C (class II fumarate hydratase n=1 Tax=Pseudooceanicola sp. HF7 TaxID=2721560 RepID=UPI0014307D7C)

HSP 1 Score: 124 bits (312), Expect = 9.100e-33
Identity = 63/85 (74.12%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    4 AKGVLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNTAK 258
            A+ VL+PGL KL +AL AKA E+ D+IKIGRTHTQDATPLTLGQEFGGYA QV   IERV+ASL  +Y LA GGTAVGTGLNT K
Sbjct:   30 ARDVLIPGLEKLAEALEAKAEEFKDIIKIGRTHTQDATPLTLGQEFGGYAHQVRKGIERVKASLGDIYELAQGGTAVGTGLNTKK 114          
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Match: A0A3R7A9J8_9STRA (Fumarate hydratase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A9J8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.150e-32
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   13 VLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGYAAQVEYSIERVEASLASLYRLALGGTAVGTGLNTAK 258
            VLLPGLRKLH AL AK AE++ +IKIGRTHTQDATP+TLGQEF GY  Q+ YSI+RVEA L +LY+LALGGTAVGTGLNT K
Sbjct:  770 VLLPGLRKLHAALDAKVAEFDGIIKIGRTHTQDATPMTLGQEFSGYREQIAYSIQRVEAVLPNLYKLALGGTAVGTGLNTTK 851          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190122.5242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDX4_ECTSI2.360e-3985.88Fumarate hydratase n=1 Tax=Ectocarpus siliculosus ... [more]
E9IJ45_SOLIN1.120e-3474.39Fumarate hydratase (Fragment) n=1 Tax=Solenopsis i... [more]
A0A0C9R9E1_9HYME4.820e-3479.27Fumarate hydratase n=4 Tax=Opiinae TaxID=68883 Rep... [more]
A0A0D1EJG4_9RHOB3.050e-3376.47Fumarate hydratase class II n=27 Tax=Rhodobacteral... [more]
A3K2D2_9RHOB4.310e-3374.42Fumarate hydratase class II n=13 Tax=Rhodobacteral... [more]
A0A397DNZ1_9STRA4.520e-3376.83Fumarate hydratase n=4 Tax=Aphanomyces astaci TaxI... [more]
A0A8D8C4D9_CULPI6.040e-3373.75Fumarate hydratase (Fragment) n=1 Tax=Culex pipien... [more]
UPI0006256B716.840e-3374.39fumarate hydratase, mitochondrial isoform X1 n=1 T... [more]
UPI0014307D7C9.100e-3374.12class II fumarate hydratase n=1 Tax=Pseudooceanico... [more]
A0A3R7A9J8_9STRA1.150e-3276.83Fumarate hydratase n=1 Tax=Aphanomyces invadans Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190122contigH-elongata_contig190122:121..1052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.1e-32
Seed eggNOG ortholog2880.D8LDX4
KEGG rclassRC00443
KEGG koko:K01679
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
EggNOG free text desc.fumarate hydratase activity
EggNOG OGsCOG0114@1,KOG1317@2759
EC4.2.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFumarate hydratase (Fumarase)
Ec32 orthologEc-23_003460.1
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.2452817-CDS-H-elongata_contig190122:120..2791622930087.2452817-CDS-H-elongata_contig190122:120..279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190122 121..279 +
1691679275.5530143-CDS-H-elongata_contig190122:120..2791691679275.5530143-CDS-H-elongata_contig190122:120..279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190122 121..279 +
1622930087.2609127-CDS-H-elongata_contig190122:953..10521622930087.2609127-CDS-H-elongata_contig190122:953..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190122 954..1052 +
1691679275.5643725-CDS-H-elongata_contig190122:953..10521691679275.5643725-CDS-H-elongata_contig190122:953..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190122 954..1052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190122.5242.1prot_H-elongata_contig190122.5242.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190122 121..1052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190122.5242.1

>prot_H-elongata_contig190122.5242.1 ID=prot_H-elongata_contig190122.5242.1|Name=mRNA_H-elongata_contig190122.5242.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
QAKGVLLPGLRKLHQALSAKAAEWNDVIKIGRTHTQDATPLTLGQEFGGY
AAQVEYSIERVEASLASLYRLALGGTAVGTGLNTAK
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mRNA from alignment at H-elongata_contig190122:121..1052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190122.5242.1 ID=mRNA_H-elongata_contig190122.5242.1|Name=mRNA_H-elongata_contig190122.5242.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=932bp|location=Sequence derived from alignment at H-elongata_contig190122:121..1052+ (Himanthalia elongata Himel1 dioecious)
CAGGCAAAAGGCGTGTTGTTGCCTGGGCTCCGCAAGCTGCATCAGGCCCT GTCGGCAAAAGCGGCAGAGTGGAATGACGTGATCAAGATCGGTCGAACGC ACACTCAGGACGCGACGCCGCTGACACTGGGGCAGGAATTCGGGGGTTAC GCGGCTCAGGTATGGGGCTGGGTGGTGGTGATGTAAACATAAAGGGGGAG TGATGTAAACATAAAGGGGGAAAGGGAAGGGAAGGGAAGGGGTCGATCCC TCTGCGACGGTCGTTCACCTGAGCGAGTCACACCTCGTGTCAAGTCGTGC CTCCCGTCGAAATCCTACGTTCTGATACTCGTTGCACTTAACTTGTGAGG CGATACAGGTCAGTCTCCTATCGCACTTCTTAGCCTCGGGGGATGGATAT ATATATATATATAATATATATATTATACAATTATGCGCGTATGTCGCGAC GAGGAAAATAATAGGTGGTCGATGACGTATGATTGAACCAACCAATGGTA ATTTACTATTGTAGTTATCGCGTGACCGCCAAAACGTTTCTGAAAATCAC GGGAATCTTCCTTCTCGAATGTATTTCTGTCTTCCTTTACATCTGTCTCT CTCGCTGTTTCTTTTTGTATCTAGATGTCTGTCTCGATCTAGATGCCCCT ATATGCCTGTCTTTCTACGAATCATATTGATGAGATGTCTTTCTCAATTA ACGAAAGTGCTGTAAGCTAGGCCGCGGCTCAAACGTGCTGTTGGCTATTG AACTCCCCCCTCAACCACCCTTCCCCCAACCCGGATGCCTTCATTTATCT GTCACTACTCCCCTTGACTCCCTCCCCCCTCAGGTCGAGTACAGCATTGA ACGGGTCGAGGCCAGCCTGGCGTCGCTTTATCGGCTTGCCCTCGGCGGCA CCGCAGTCGGGACCGGCCTCAACACCGCGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig190122:121..1052+

>mRNA_H-elongata_contig190122.5242.1 ID=mRNA_H-elongata_contig190122.5242.1|Name=mRNA_H-elongata_contig190122.5242.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig190122:121..1052+ (Himanthalia elongata Himel1 dioecious)
CAGGCAAAAGGCGTGTTGTTGCCTGGGCTCCGCAAGCTGCATCAGGCCCT
GTCGGCAAAAGCGGCAGAGTGGAATGACGTGATCAAGATCGGTCGAACGC
ACACTCAGGACGCGACGCCGCTGACACTGGGGCAGGAATTCGGGGGTTAC
GCGGCTCAGCAGGCAAAAGGCGTGTTGTTGCCTGGGCTCCGCAAGCTGCA
TCAGGCCCTGTCGGCAAAAGCGGCAGAGTGGAATGACGTGATCAAGATCG
GTCGAACGCACACTCAGGACGCGACGCCGCTGACACTGGGGCAGGAATTC
GGGGGTTACGCGGCTCAGGTCGAGTACAGCATTGAACGGGTCGAGGCCAG
CCTGGCGTCGCTTTATCGGCTTGCCCTCGGCGGCACCGCAGTCGGGACCG
GCCTCAACACCGCGAAGGTCGAGTACAGCATTGAACGGGTCGAGGCCAGC
CTGGCGTCGCTTTATCGGCTTGCCCTCGGCGGCACCGCAGTCGGGACCGG
CCTCAACACCGCGAAG
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