mRNA_H-elongata_contig106406.524.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: D8LTJ6_ECTSI (Myosin IA, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTJ6_ECTSI) HSP 1 Score: 179 bits (455), Expect = 9.940e-50 Identity = 98/138 (71.01%), Postives = 107/138 (77.54%), Query Frame = 1
Query: 1 VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARRHPSLSAQFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQRLQENVRVRRQGYASRMAFGHFVRRY 414
VTY AD FIEKNADRLH DV SLL++S+NPLAA LF++ A + NKARRHPSLSAQFKKQVD LC SLARCRPHYVRCIKPNSTKTPL++D TM THQ L+ENVRVRRQGYA RM F HFVRRY
Sbjct: 297 VTYAADRFIEKNADRLHDDVKSLLAKSTNPLAAELFREGARSTGPHNKARRHPSLSAQFKKQVDALCGSLARCRPHYVRCIKPNSTKTPLKVDETMLTHQVTYLG--------LRENVRVRRQGYAYRMPFEHFVRRY 426
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: A0A6H5KZ38_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ38_9PHAE) HSP 1 Score: 179 bits (455), Expect = 1.120e-49 Identity = 98/138 (71.01%), Postives = 107/138 (77.54%), Query Frame = 1
Query: 1 VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARRHPSLSAQFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQRLQENVRVRRQGYASRMAFGHFVRRY 414
VTY AD FIEKNADRLH DV SLL++S+NPLAA LF++ A + NKARRHPSLSAQFKKQVD LC SLARCRPHYVRCIKPNSTKTPL++D TM THQ L+ENVRVRRQGYA RM F HFVRRY
Sbjct: 643 VTYAADRFIEKNADRLHGDVKSLLAKSTNPLAAELFREGARSAGPHNKARRHPSLSAQFKKQVDALCGSLARCRPHYVRCIKPNSTKTPLKVDETMLTHQVTYLG--------LRENVRVRRQGYAYRMPFEHFVRRY 772
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: A0A835YR46_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR46_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.950e-25 Identity = 64/140 (45.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 1 VTYEADN-FIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARRHPSLSAQFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQR-LQENVRVRRQGYASRMAFGHFVRRY 414
V Y AD+ F++KN D +++D+ L+++S NPLAA LF+ ++ + A +A+R S+SAQFK+QV L +LA+C PHYVRCIKPN K P D +HQ AL+ L+EN+RVRRQG+ R+++ F RRY
Sbjct: 577 VAYTADDLFMDKNRDSMYQDLGDLIARSENPLAAGLFEGHSQ-QTLAQRAKRPVSISAQFKRQVGALHDTLAKCAPHYVRCIKPNDDKAPCAADTQRVSHQPSTVLALLEVTYLGLEENLRVRRQGFVHRISYADFARRY 715
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: A0A7S2SEZ6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEZ6_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.440e-22 Identity = 59/138 (42.75%), Postives = 79/138 (57.25%), Query Frame = 1
Query: 1 VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARRHPSLSAQFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQRLQENVRVRRQGYASRMAFGHFVRRY 414
V Y+ + F+EKN D L D+V L++S PL LF + KA+R PS+S QFK+QV EL +L +C+PHY+RCIKPN+ K D + HQ K L ENV+VRR G+ R+ F F+RRY
Sbjct: 497 VVYQYEGFVEKNLDSLFLDLVETLAESGMPLMRDLFDDQRTEK---EKAKRPPSVSTQFKRQVTELMATLEKCQPHYIRCIKPNAAKRSNFTDPELMLHQV--------KYLGLTENVKVRRAGFCHRVTFERFLRRY 623
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: A0A0B2VQF3_TOXCA (Unconventional myosin-Ie n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2VQF3_TOXCA) HSP 1 Score: 97.4 bits (241), Expect = 7.310e-21 Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 1 VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARRHP-SLSAQFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQRLQENVRVRRQGYASRMAFGHFVRRY 414
V Y D F EKN D L++D++SL+ QS P ++F E ++ A+ P S S++ + Q ++L +SL +C PHYVRCIKPN TK PL+ D HQ L+EN+RVRR G+A R F F+ RY
Sbjct: 551 VVYNVDCFCEKNRDVLYQDLISLMQQSQRPFLVQMFP-----EMVSSGAKSKPTSFSSKIRTQANDLVESLTKCAPHYVRCIKPNETKRPLDWDDKRVLHQVEYLG--------LKENIRVRRAGFAYRRTFERFIYRY 676
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: A0A7S4MKL6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MKL6_9EUKA) HSP 1 Score: 96.7 bits (239), Expect = 1.360e-20 Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 1
Query: 1 VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARRHPSLSA-QFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQRLQENVRVRRQGYASRMAFGHFVRRY 414
VTYE D F +KN D L D++ ++ S+N LF N N +R+ P+ + + K +L K+L+ C PHYVRCIKPN TK PL+ D HQA+ L ENVRVRR G+A R F F++RY
Sbjct: 509 VTYEVDGFCDKNKDTLFNDLIEMMQCSTNRFLVNLFPDNTKD----NSSRKRPTTAGFKIKTSCQQLMKTLSACTPHYVRCIKPNETKKPLDWDEPRVKHQAQYLGLL--------ENVRVRRAGFAYRAEFARFLKRY 635
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: F1KTI8_ASCSU (Myosin-Ie n=1 Tax=Ascaris suum TaxID=6253 RepID=F1KTI8_ASCSU) HSP 1 Score: 95.9 bits (237), Expect = 2.530e-20 Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1
Query: 1 VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARRHP-SLSAQFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQRLQENVRVRRQGYASRMAFGHFVRRY 414
V Y +NF EKN D L++D++SL+ S P + +F E ++ A+ P S S++ + Q ++L SL +C PHYVRCIKPN TK PL+ D HQ L+EN+RVRR G+A R F F+ RY
Sbjct: 509 VVYNVENFCEKNRDVLYQDLISLMQISQRPFLSHMFP-----ETVSSGAKTKPTSFSSKIRSQANDLVDSLTKCAPHYVRCIKPNETKRPLDWDDKRVLHQVEYLG--------LKENIRVRRAGFAYRRPFERFIYRY 634
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: A0A0M3JSI6_ANISI (Uncharacterized protein n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3JSI6_ANISI) HSP 1 Score: 94.7 bits (234), Expect = 6.400e-20 Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 1 VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARRHP-SLSAQFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQRLQENVRVRRQGYASRMAFGHFVRRY 414
V Y D F EKN D L++D++SL+ S P A +F + ++ A+ P S S++ + Q ++L +SL +C PHYVRCIKPN TK PL+ D HQ + L+EN+RVRR G+A R F F+ RY
Sbjct: 477 VVYNVDCFCEKNRDVLYQDLISLMQHSERPFLAHMFP-----DVISSGAKTKPTSFSSKIRTQANDLVESLTKCAPHYVRCIKPNETKRPLDWDDKRVLHQVQYLG--------LRENIRVRRAGFAYRRKFEKFIYRY 602
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: A0A4U5PCL6_STECR (Uncharacterized protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5PCL6_STECR) HSP 1 Score: 94.7 bits (234), Expect = 6.420e-20 Identity = 59/139 (42.45%), Postives = 76/139 (54.68%), Query Frame = 1
Query: 1 VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKAR-RHPSLSAQFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQRLQENVRVRRQGYASRMAFGHFVRRY 414
V Y D F ++N D L+ D++ L+ QS NP A LF E N A+ + S S + K Q + L +SL +C PHYVRCIKPN TK PL+ D HQ L+EN+RVRR G+A R AF F+ RY
Sbjct: 506 VVYNIDGFCDRNRDVLYDDLILLMQQSKNPFMASLFP-----EQINNGAKTKRTSASTKIKNQANALVESLMKCSPHYVRCIKPNETKKPLDWDEQRVHHQVEYLG--------LKENIRVRRAGFAYRRAFEKFLWRY 631
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Match: UPI001643D0BA (LOW QUALITY PROTEIN: unconventional myosin-VIIa n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=UPI001643D0BA) HSP 1 Score: 94.0 bits (232), Expect = 1.240e-19 Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 1
Query: 1 VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARRHPSLSAQFKKQVDELCKSLARCRPHYVRCIKPNSTKTPLEMDVTMTTHQARRRAALISKMQRLQENVRVRRQGYASRMAFGHFVRRY 414
V YE F+EKN D LH D++ L+ S N ++FQ + A K R P+LS+QFK+ ++ L ++L+ C+P +VRCIKPN K P++ D + Q R + E +R+RR GY R F FV RY
Sbjct: 536 VHYETRGFLEKNRDSLHTDIIQLVHSSKNKFIKQIFQADVAMGVETRK--RSPTLSSQFKRSLELLMRTLSVCQPFFVRCIKPNELKKPMQFDRELCVRQLRYSGMM--------ETIRIRRAGYPIRYTFAEFVDRY 663 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106406.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106406.524.1 >prot_H-elongata_contig106406.524.1 ID=prot_H-elongata_contig106406.524.1|Name=mRNA_H-elongata_contig106406.524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp VTYEADNFIEKNADRLHRDVVSLLSQSSNPLAARLFQQNAAAEPAANKARback to top mRNA from alignment at H-elongata_contig106406:260..1652- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106406.524.1 ID=mRNA_H-elongata_contig106406.524.1|Name=mRNA_H-elongata_contig106406.524.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1393bp|location=Sequence derived from alignment at H-elongata_contig106406:260..1652- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106406:260..1652- >mRNA_H-elongata_contig106406.524.1 ID=mRNA_H-elongata_contig106406.524.1|Name=mRNA_H-elongata_contig106406.524.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig106406:260..1652- (Himanthalia elongata Himel1 dioecious)back to top |