mRNA_H-elongata_contig190078.5239.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: D7G0D7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D7_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 5.290e-14 Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
E+FLERV VNFE+ST + K +P R E+ MCL+ G WY ++ KD TFP +DPV+SLDVQ+
Sbjct: 273 EDFLERVSVNFEVSTTPEGSKVEPGRVREMAMCLR----GSWYTIRAKDGTFPAEDPVKSLDVQI 333
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A0S8BNE1_9PROT (Uncharacterized protein n=1 Tax=Acidithiobacillales bacterium SG8_45 TaxID=1703383 RepID=A0A0S8BNE1_9PROT) HSP 1 Score: 55.8 bits (133), Expect = 1.810e-7 Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 10 FLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
F+++V+ FE++ E KP RAGE GM L G+WY+L IKD+ P DDPV LDV +
Sbjct: 270 FIDQVKSAFEVT--ESSSPVKPQRAGEFGMYLN----GQWYKLSIKDELIPADDPVARLDVSL 326
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A1W9QP82_9BACT (Uncharacterized protein n=1 Tax=Candidatus Cloacimonas sp. 4484_275 TaxID=1970770 RepID=A0A1W9QP82_9BACT) HSP 1 Score: 54.7 bits (130), Expect = 4.640e-7 Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
+EFL++V F++ V + KP++A GM L GKWY+L + T+P+DDPV+SLDV +
Sbjct: 268 DEFLKKVGEKFKVEEVTGNKPYKPEKAHTFGMYLD----GKWYKLTALEGTYPKDDPVKSLDVSI 328
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A381I7M5_CLODI (SpoOJ/ParA/ParB/repB family protein n=1 Tax=Clostridioides difficile TaxID=1496 RepID=A0A381I7M5_CLODI) HSP 1 Score: 52.4 bits (124), Expect = 8.390e-7 Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 1
Query: 4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
EEF+ +++ NFE+ +E K KPD+ G GM L KWY++K +DPV SLD+ +
Sbjct: 70 EEFINKIKENFELEEIEGKEKYKPDKKGTFGMYLGD----KWYKMKANKNLLEIEDPVDSLDISI 130
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: UPI000FD8018D (DUF1015 family protein n=1 Tax=Sulfurivermis fontis TaxID=1972068 RepID=UPI000FD8018D) HSP 1 Score: 53.1 bits (126), Expect = 1.620e-6 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 46 TVEQHGKK-KPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
TVE+ G + KP RAGE GM LK G+WYRL IK + P+DDPV+ LDV +
Sbjct: 279 TVEKTGGQCKPARAGEFGMYLK----GQWYRLTIKPELVPQDDPVKRLDVSL 326
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: UPI00115EF336 (DUF1015 family protein n=1 Tax=Clostridioides difficile TaxID=1496 RepID=UPI00115EF336) HSP 1 Score: 52.4 bits (124), Expect = 2.530e-6 Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 1
Query: 4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
EEF+ +++ NFE+ +E K KPD+ G GM L KWY++K +DPV SLD+ +
Sbjct: 112 EEFINKIKENFELEEIEGKEKYKPDKKGTFGMYLGD----KWYKMKANKNLLEIEDPVDSLDISI 172
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A1F6TB06_9PROT (Uncharacterized protein n=2 Tax=Candidatus Muproteobacteria TaxID=1817795 RepID=A0A1F6TB06_9PROT) HSP 1 Score: 52.4 bits (124), Expect = 3.040e-6 Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 1
Query: 4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
E FL ++R F ++ + K P RAGE GM L G+WYRL IK + P DDPVR LDV +
Sbjct: 268 EAFLAKLRAAFAVAPADSAVK--PARAGEFGMYLA----GRWYRLGIKPELVPGDDPVRRLDVSL 326
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: W7TNQ3_9STRA (Uncharacterized conserved protein UCP033563 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNQ3_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 3.050e-6 Identity = 33/84 (39.29%), Postives = 43/84 (51.19%), Query Frame = 1
Query: 4 EEFLERVRVNFEISTV-----------------EQHGKK--KPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
+EFL +V NFE+S G K +P GE+GMCL+ G WYRLK ++ + P+ DPV SLDVQV
Sbjct: 274 DEFLSKVMENFEVSKSGGEEVKPDEGAGNGGEPRPGGNKIVRPTVKGEVGMCLR----GTWYRLKAREASVPKHDPVNSLDVQV 353
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A3B1ANF2_9ZZZZ (Related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1ANF2_9ZZZZ) HSP 1 Score: 51.2 bits (121), Expect = 7.770e-6 Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 1
Query: 4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
+EFL + NFE+ +Q K P++ GM L +WYRL IKD P+DDPVR LDV +
Sbjct: 267 DEFLRQCAENFEVQASDQEVK--PEKPNVFGMYLDN----QWYRLVIKDNLIPQDDPVRRLDVSL 325
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A3D1RPN9_9FIRM (DUF1015 domain-containing protein n=1 Tax=Syntrophomonas sp. TaxID=2053627 RepID=A0A3D1RPN9_9FIRM) HSP 1 Score: 51.2 bits (121), Expect = 7.770e-6 Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1
Query: 10 FLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
FL+ V F+I+ G +P+ IGM L+ G+WY LK+++ +FP DDPV LDV +
Sbjct: 271 FLDAVGRKFDITPCSDRGPYRPECKHRIGMYLQ----GRWYTLKVREGSFPADDPVERLDVSI 329 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig190078.5239.1 >prot_H-elongata_contig190078.5239.1 ID=prot_H-elongata_contig190078.5239.1|Name=mRNA_H-elongata_contig190078.5239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp IEEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDback to top mRNA from alignment at H-elongata_contig190078:274..471+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig190078.5239.1 ID=mRNA_H-elongata_contig190078.5239.1|Name=mRNA_H-elongata_contig190078.5239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig190078:274..471+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig190078:274..471+ >mRNA_H-elongata_contig190078.5239.1 ID=mRNA_H-elongata_contig190078.5239.1|Name=mRNA_H-elongata_contig190078.5239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig190078:274..471+ (Himanthalia elongata Himel1 dioecious)back to top |