mRNA_H-elongata_contig190033.5236.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190033.5236.1
Unique NamemRNA_H-elongata_contig190033.5236.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig190033.5236.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 6.420e-10
Identity = 30/37 (81.08%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 FASAVSEARAGVMAGLGAASMESYQRAYPFLIKLHSL 111
            FA+A+++ARA VMAGLGAASMESY+RAYPFL+KLHSL
Sbjct: 1226 FAAAITQARADVMAGLGAASMESYRRAYPFLLKLHSL 1262
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BLAST of mRNA_H-elongata_contig190033.5236.1 vs. uniprot
Match: A0A6H5KWD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.450e-10
Identity = 30/37 (81.08%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 FASAVSEARAGVMAGLGAASMESYQRAYPFLIKLHSL 111
            FA+A+++ARA VMAGLGAASMESY+RAYPFL+KLHSL
Sbjct:   69 FAAAITQARADVMAGLGAASMESYRRAYPFLLKLHSL 105
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BLAST of mRNA_H-elongata_contig190033.5236.1 vs. uniprot
Match: A0A5J4XEM8_9CHLO (Serine threonine-kinase ATR-like (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XEM8_9CHLO)

HSP 1 Score: 47.4 bits (111), Expect = 5.050e-5
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   13 VSEARAGVMAGLGAASMESYQRAYPFLIKLHSL 111
            ++EAR+ VMA L AASMESY RAYP+L+KLH L
Sbjct: 1590 IAEARSEVMAPLSAASMESYTRAYPYLVKLHML 1622
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BLAST of mRNA_H-elongata_contig190033.5236.1 vs. uniprot
Match: A0A7S2AXE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AXE0_9STRA)

HSP 1 Score: 45.1 bits (105), Expect = 8.690e-5
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 FASAVSEARAGVMAGLGAASMESYQRAYPFLIKLHSL 111
            F  A+  ARA VM GL AAS ESYQRAYP L++LH L
Sbjct:   69 FQGAMRNARAHVMQGLAAASRESYQRAYPLLMRLHIL 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190033.5236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FT24_ECTSI6.420e-1081.08Similar to ataxia telangiectasia and Rad3 related ... [more]
A0A6H5KWD2_9PHAE6.450e-1081.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5J4XEM8_9CHLO5.050e-569.70Serine threonine-kinase ATR-like (Fragment) n=1 Ta... [more]
A0A7S2AXE0_9STRA8.690e-564.86Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190033contigH-elongata_contig190033:420..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue6.7e-08
Seed eggNOG ortholog2880.D7FT24
KEGG koko:K06640
KEGG Pathwayko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0890@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.8161228-CDS-H-elongata_contig190033:419..5301622930086.8161228-CDS-H-elongata_contig190033:419..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190033 420..530 -
1691679275.3584087-CDS-H-elongata_contig190033:419..5301691679275.3584087-CDS-H-elongata_contig190033:419..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190033 420..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190033.5236.1prot_H-elongata_contig190033.5236.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190033 420..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190033.5236.1

>prot_H-elongata_contig190033.5236.1 ID=prot_H-elongata_contig190033.5236.1|Name=mRNA_H-elongata_contig190033.5236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
FASAVSEARAGVMAGLGAASMESYQRAYPFLIKLHSL
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mRNA from alignment at H-elongata_contig190033:420..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190033.5236.1 ID=mRNA_H-elongata_contig190033.5236.1|Name=mRNA_H-elongata_contig190033.5236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig190033:420..530- (Himanthalia elongata Himel1 dioecious)
TTCGCGTCTGCCGTATCGGAGGCTAGGGCCGGCGTGATGGCCGGGCTGGG
AGCGGCCAGTATGGAGTCGTACCAACGGGCCTACCCTTTCCTGATCAAGC
TACACAGCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig190033:420..530-

>mRNA_H-elongata_contig190033.5236.1 ID=mRNA_H-elongata_contig190033.5236.1|Name=mRNA_H-elongata_contig190033.5236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig190033:420..530- (Himanthalia elongata Himel1 dioecious)
TTCGCGTCTGCCGTATCGGAGGCTAGGGCCGGCGTGATGGCCGGGCTGGG
AGCGGCCAGTATGGAGTCGTACCAACGGGCCTACCCTTTCCTGATCAAGC
TACACAGCCTCTTCGCGTCTGCCGTATCGGAGGCTAGGGCCGGCGTGATG
GCCGGGCTGGGAGCGGCCAGTATGGAGTCGTACCAACGGGCCTACCCTTT
CCTGATCAAGCTACACAGCCTC
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