mRNA_H-elongata_contig18996.5234.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18996.5234.1
Unique NamemRNA_H-elongata_contig18996.5234.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: D7FZC2_ECTSI (Similar to Imprinted and ancient n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.760e-25
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRGATAASGSAG 213
            GE+AAGSRLAHMLAIT AQNV+VVVSRW+GGIHLGPDRFKHINNAARELLV  GAT A    G
Sbjct:  214 GESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCGATKADAEVG 276
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: A0A6P8FTW5_CLUHA (protein IMPACT isoform X2 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8FTW5_CLUHA)

HSP 1 Score: 90.9 bits (224), Expect = 9.510e-22
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRGAT 192
            GETAAG+RL H+L I D QNV+VVV+RW+GGI LGPDRFKHINN+AR LLVQ G T
Sbjct:   63 GETAAGARLLHLLQILDVQNVMVVVTRWYGGILLGPDRFKHINNSARNLLVQEGYT 118
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: A0A6P8G733_CLUHA (protein IMPACT isoform X1 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8G733_CLUHA)

HSP 1 Score: 90.9 bits (224), Expect = 1.760e-21
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRGAT 192
            GETAAG+RL H+L I D QNV+VVV+RW+GGI LGPDRFKHINN+AR LLVQ G T
Sbjct:   63 GETAAGARLLHLLQILDVQNVMVVVTRWYGGILLGPDRFKHINNSARNLLVQEGYT 118
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: UPI0018ECB4DB (protein IMPACT n=1 Tax=Micropterus salmoides TaxID=27706 RepID=UPI0018ECB4DB)

HSP 1 Score: 89.0 bits (219), Expect = 2.130e-21
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRGATA 195
            GETAAG RL H+L I D +NV+VVVSRW+GGI LGPDRFKHINN AR +LV+ G TA
Sbjct:   28 GETAAGGRLLHLLQILDVRNVMVVVSRWYGGILLGPDRFKHINNCARNILVEEGYTA 84
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: A0A3B4X5I2_SERLL (Impact RWD domain protein n=7 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B4X5I2_SERLL)

HSP 1 Score: 92.4 bits (228), Expect = 4.370e-21
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRGATAASGSAGESK 222
            GETAAG RL H+L I D +NV+VVVSRW+GGI LGPDRFKHINN AR +LV+ G TA+S +A ++K
Sbjct:  201 GETAAGGRLLHLLQILDVRNVMVVVSRWYGGILLGPDRFKHINNCARNILVEEGYTASSDAAAKNK 266
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: A0A0G4G690_VITBC (RWD domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G690_VITBC)

HSP 1 Score: 92.4 bits (228), Expect = 5.720e-21
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRGATAASGSAGESK 222
            GE+AAG RL H+L+I +  N++VVVSRW+GGIHLGPDRFKHINNAAREL+V+ G  A  G  G+ +
Sbjct:  223 GESAAGGRLQHLLSIVNTSNIMVVVSRWYGGIHLGPDRFKHINNAARELMVKCGVIADEGPPGDKR 288
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: UPI001C04350B (protein IMPACT n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C04350B)

HSP 1 Score: 92.8 bits (229), Expect = 5.920e-21
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRGATAASGSAGESK 222
            GETAAG RL H+L I D +NVLVVVSRW+GGI LGPDRFKHINN AR +LV+ G TA++  A +SK
Sbjct:  242 GETAAGGRLLHLLQILDVRNVLVVVSRWYGGILLGPDRFKHINNCARNILVEEGYTASTDEASKSK 307
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: A0A3B4X520_SERLL (Impact RWD domain protein n=10 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B4X520_SERLL)

HSP 1 Score: 92.4 bits (228), Expect = 8.280e-21
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRGATAASGSAGESK 222
            GETAAG RL H+L I D +NV+VVVSRW+GGI LGPDRFKHINN AR +LV+ G TA+S +A ++K
Sbjct:  244 GETAAGGRLLHLLQILDVRNVMVVVSRWYGGILLGPDRFKHINNCARNILVEEGYTASSDAAAKNK 309
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: UPI0009A3793D (protein IMPACT-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A3793D)

HSP 1 Score: 88.2 bits (217), Expect = 8.400e-21
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRG 186
            GETAAG RL H+L I DA+NVLV+VSRW+GGI LGPDRFKHINN AR +LV  G
Sbjct:   53 GETAAGGRLLHLLQILDARNVLVIVSRWYGGILLGPDRFKHINNCARNILVDEG 106
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BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Match: A0A0J9XB17_GEOCN (Similar to Saccharomyces cerevisiae YCR059C YIH1 Protein that inhibits activation of Gcn2p n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XB17_GEOCN)

HSP 1 Score: 91.3 bits (225), Expect = 1.060e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   25 GETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHINNAARELLVQRG 186
            GETAAGSRL H+LA+TD+ NV V VSRWFGGIHLGPDRFKHIN+AARE LV  G
Sbjct:  200 GETAAGSRLLHLLALTDSWNVGVCVSRWFGGIHLGPDRFKHINSAAREALVNGG 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18996.5234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZC2_ECTSI1.760e-2582.54Similar to Imprinted and ancient n=1 Tax=Ectocarpu... [more]
A0A6P8FTW5_CLUHA9.510e-2275.00protein IMPACT isoform X2 n=1 Tax=Clupea harengus ... [more]
A0A6P8G733_CLUHA1.760e-2175.00protein IMPACT isoform X1 n=1 Tax=Clupea harengus ... [more]
UPI0018ECB4DB2.130e-2171.93protein IMPACT n=1 Tax=Micropterus salmoides TaxID... [more]
A0A3B4X5I2_SERLL4.370e-2166.67Impact RWD domain protein n=7 Tax=Percomorphaceae ... [more]
A0A0G4G690_VITBC5.720e-2163.64RWD domain-containing protein n=1 Tax=Vitrella bra... [more]
UPI001C04350B5.920e-2168.18protein IMPACT n=1 Tax=Melanotaenia boesemani TaxI... [more]
A0A3B4X520_SERLL8.280e-2166.67Impact RWD domain protein n=10 Tax=Percomorphaceae... [more]
UPI0009A3793D8.400e-2174.07protein IMPACT-like n=1 Tax=Rhincodon typus TaxID=... [more]
A0A0J9XB17_GEOCN1.060e-2079.63Similar to Saccharomyces cerevisiae YCR059C YIH1 P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18996contigH-elongata_contig18996:642..1821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue6.2e-21
Seed eggNOG ortholog2880.D7FZC2
Preferred nameIMPACT
KEGG rclassRC00024,RC00080,RC00329
KEGG koko:K00135,ko:K01476
KEGG ReactionR00551,R00713,R00714,R02401
KEGG Pathwayko00220,ko00250,ko00310,ko00330,ko00350,ko00650,ko00760,ko01100,ko01110,ko01120,ko01130,ko01230,ko05146,map00220,map00250,map00310,map00330,map00350,map00650,map00760,map01100,map01110,map01120,map01130,map01230,map05146
KEGG ModuleM00027,M00029,M00134
GOsGO:0000122,GO:0000302,GO:0000902,GO:0001932,GO:0001933,GO:0003674,GO:0003779,GO:0003785,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006355,GO:0006357,GO:0006417,GO:0006446,GO:0006469,GO:0006950,GO:0006979,GO:0007154,GO:0007275,GO:0007399,GO:0008092,GO:0008150,GO:0009267,GO:0009268,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010225,GO:0010243,GO:0010447,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010720,GO:0010941,GO:0014070,GO:0016043,GO:0016049,GO:0019207,GO:0019210,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031333,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0031952,GO:0031953,GO:0032056,GO:0032058,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0033673,GO:0034198,GO:0034248,GO:0034250,GO:0034599,GO:0034614,GO:0034644,GO:0035690,GO:0040007,GO:0042149,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042594,GO:0043021,GO:0043022,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043549,GO:0043555,GO:0043558,GO:0043618,GO:0043620,GO:0044087,GO:0044092,GO:0044424,GO:0044464,GO:0044877,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045727,GO:0045859,GO:0045892,GO:0045934,GO:0045936,GO:0045948,GO:0046677,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048588,GO:0048589,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051338,GO:0051348,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0060560,GO:0060733,GO:0060992,GO:0065007,GO:0065009,GO:0070301,GO:0070887,GO:0071214,GO:0071236,GO:0071262,GO:0071264,GO:0071310,GO:0071407,GO:0071417,GO:0071467,GO:0071468,GO:0071478,GO:0071482,GO:0071494,GO:0071495,GO:0071496,GO:0071840,GO:0072755,GO:0080090,GO:0080134,GO:0080135,GO:0097201,GO:0097237,GO:0098772,GO:0104004,GO:0120036,GO:0120039,GO:1901561,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:1990138,GO:1990253,GO:1990497,GO:1990904,GO:1990928,GO:2000026,GO:2000112,GO:2000113,GO:2000765,GO:2001141
EggNOG free text desc.response to benomyl
EggNOG OGsCOG1739@1,KOG3299@2759
EC1.2.1.16,1.2.1.20,1.2.1.79,3.5.3.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.5395236-CDS-H-elongata_contig18996:641..7561622930086.5395236-CDS-H-elongata_contig18996:641..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18996 642..756 -
1691679275.2357132-CDS-H-elongata_contig18996:641..7561691679275.2357132-CDS-H-elongata_contig18996:641..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18996 642..756 -
1622930086.5565689-CDS-H-elongata_contig18996:1714..18211622930086.5565689-CDS-H-elongata_contig18996:1714..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18996 1715..1821 -
1691679275.246711-CDS-H-elongata_contig18996:1714..18211691679275.246711-CDS-H-elongata_contig18996:1714..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18996 1715..1821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18996.5234.1prot_H-elongata_contig18996.5234.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18996 642..1821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18996.5234.1

>prot_H-elongata_contig18996.5234.1 ID=prot_H-elongata_contig18996.5234.1|Name=mRNA_H-elongata_contig18996.5234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MLTLPRPPGETAAGSRLAHMLAITDAQNVLVVVSRWFGGIHLGPDRFKHI
NNAARELLVQRGATAASGSAGESK
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mRNA from alignment at H-elongata_contig18996:642..1821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18996.5234.1 ID=mRNA_H-elongata_contig18996.5234.1|Name=mRNA_H-elongata_contig18996.5234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1180bp|location=Sequence derived from alignment at H-elongata_contig18996:642..1821- (Himanthalia elongata Himel1 dioecious)
ATGCTGACTTTACCGCGCCCCCCAGGAGAGACGGCCGCCGGCAGCCGACT
GGCGCACATGCTGGCCATCACTGATGCTCAAAACGTTCTCGTGGTGGTGT
CCCGGTGGTAAGCGTAAAGTAAAATAGGCGCCTAGTTCATTGTCGTGTGA
AGTCCTATGGATTCGCGTGGAAGCTAGCCAAGAGTACCTACCGCTGTAAC
GATTATTTTCAGCCATACGTTCAAATAATAGATAACAGTAGAGTAGAACT
AGACTCGTTTGCCGGCAACATGCTTGCGCCCCCACAACACACCAATGTTG
CGCCGAGCTTCTGTGATTAGTCAGTCGAAATGAGGTTATCTCTAGCTGTT
TTCAGCTGGAGCGCCCTTGTACAGCGTACGGTAACGTACACGTATACGAC
CTACAGTATTGTGCGTGCAGCACGTCGCGTTGCTGGTGGCGGGCACAGGG
GCGCAGGCACGTCCTCTCCGCATTACATGATCTTGGGGTTGTTACTCCTA
CCGAGATCCCGTGTGGGCAACGAAGCGTCCAGAGGTGGCCGCTTGCGATC
CAGCAGCAACTGCTACGTGTTCGGCTTCCGACGATGTCAAAGTGGTGCCT
CTCTTTTTTTTGTATTATTGTTTTAAAAATTATTGCAGTCGAACAAGAGT
TTCTTGATATCCTATTTCATCCATCCAGGACAGCACCCCTATCCTTCCTA
ACAGACAGTTAAGGCGTGCAAAACTTGAATATGCCCCCCCCCCTCCCCTC
TTGACTGACATTAAATAATGCATACTTATGCTCAGCTCAAAGCGGATGAA
TAAAGGGGGAAACAGTGGGGGAGGGGGGGTGGAAGGGGCAGAGAGGGAGA
AGCATACCAAGAGGATGAGCACAGGGAATGGTGCTTGAAGTTGTTCCGCG
TCACAAGCGCGCCGGATATTGTACCTGCAATTAGTTTTCAAGCATATATA
TGTATAGTTACTTTGTTGCATCCTCTTTTCTTTATATATATCTATTGTAT
GTATTGCATCTAATAACCGAATCGGGCCGACCGGATCGGACGTAACGGCG
GCATTCTTGGACAAGGTTTGGCGGGATTCACCTCGGGCCGGACCGTTTCA
AGCACATCAATAACGCCGCCAGGGAACTCCTCGTGCAGCGCGGCGCGACG
GCGGCGAGCGGCAGTGCTGGGGAAAGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig18996:642..1821-

>mRNA_H-elongata_contig18996.5234.1 ID=mRNA_H-elongata_contig18996.5234.1|Name=mRNA_H-elongata_contig18996.5234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig18996:642..1821- (Himanthalia elongata Himel1 dioecious)
ATGCTGACTTTACCGCGCCCCCCAGGAGAGACGGCCGCCGGCAGCCGACT
GGCGCACATGCTGGCCATCACTGATGCTCAAAACGTTCTCGTGGTGGTGT
CCCGGTGATGCTGACTTTACCGCGCCCCCCAGGAGAGACGGCCGCCGGCA
GCCGACTGGCGCACATGCTGGCCATCACTGATGCTCAAAACGTTCTCGTG
GTGGTGTCCCGGTGGTTTGGCGGGATTCACCTCGGGCCGGACCGTTTCAA
GCACATCAATAACGCCGCCAGGGAACTCCTCGTGCAGCGCGGCGCGACGG
CGGCGAGCGGCAGTGCTGGGGAAAGCAAGGTTTGGCGGGATTCACCTCGG
GCCGGACCGTTTCAAGCACATCAATAACGCCGCCAGGGAACTCCTCGTGC
AGCGCGGCGCGACGGCGGCGAGCGGCAGTGCTGGGGAAAGCAAG
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