mRNA_H-elongata_contig18995.5233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18995.5233.1
Unique NamemRNA_H-elongata_contig18995.5233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: D8LNQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ9_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 8.870e-110
Identity = 245/533 (45.97%), Postives = 299/533 (56.10%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQVNRNKILCVELKGELFFGSSRQVLEQVTGMLGLDKTPGSMRKSSVISGGQAGPEAAASSGNGNAEERTPGEAAQQWCGWALKALLKRFKAKACAQDADANVSVLKVEMKSSTQDAFVRSSKHILRFDLFFLSPNRDAIVPASGRMRKHYYRLRSIDRSIVLSIKTPKRSPASARSRGHRSRSVSLSRGDQDRRRHFSLPVSNSSPSDTYKTLLSNTKRFLKPM-KMVTSGDNRNNPEERSPIFRPSPQAKWYGAARRGWIGEADEMVEPGRGDTESVGEGTVSSDDLEEEDELPSFIVLDCSKVTNIDASAARVCFLALQRVTETHGVSIAYAGLTNMMETLL--RHAISCDNVAVFPSFYPALDWCETQLIRSVASTDEETSGRLWASSHFHQRE 1599
            SYIFSQTLF+RR GC SRL+GW V VSELA+C+VT+DPMA+VPL FF+ATL+FIAV+L VEWLWE+REKLL YEY +LL TFVAIQVVGL+ GL+ G+  S   FVISYASE++NT+ERV+KR R MRPASQRRLLQV+R+KILCVEL+GELFFGSS+QVL +VT MLGL   P   R      G      AAA   +G + + T  EA Q+W G   KAL K F A+A                                                  GR                L  ++P+ SP     RG  SRS    RG        S   + + P      + +     +    K++ +GD+R   E        S      G A     GE +E                    D  EE EL SFIVLDCSKVTNIDASAAR CFL LQR+ E +GV IAYAGLT  METLL    AI  DNVAVF +F+ A+DWCETQLIRS+ + +++ +   WA+SHF +RE
Sbjct:  303 SYIFSQTLFTRRTGCQSRLIGWFVAVSELAMCVVTIDPMAFVPLLFFAATLSFIAVELSVEWLWEVREKLLAYEYFVLLATFVAIQVVGLNQGLVAGVAFSTAIFVISYASERKNTLERVHKRGRFMRPASQRRLLQVHRDKILCVELRGELFFGSSQQVLREVTAMLGLAAPPVGKRGKEATPGVAT---AAAGGADGGSSQSTRKEAFQRWWGKVHKALRKCFTARA--------------------------------------------------GR--------------TALEDRSPEGSPL----RGGSSRSPLSRRGT-------SYGAAGAGPRTNGGAVAAMEAGTVTDAGKVLGAGDSRGRDETAGGAVNVSG-----GTASLAAGGEEEEQ-------------------DSAEEGELISFIVLDCSKVTNIDASAARTCFLPLQRLAEANGVCIAYAGLTERMETLLSIHKAIGLDNVAVFKTFFTAVDWCETQLIRSLDAYEDDGNASFWATSHFSRRE 733
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: A0A835ZH57_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH57_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.540e-49
Identity = 196/668 (29.34%), Postives = 284/668 (42.51%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMA----------------------------YVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQVNRNKILCVELKGELFFGSSRQVLEQVTGMLGLDKTPGSM----RKSSVISGGQAGPEAAASSGNGNAEE------------RTPGEAA----QQWCGWALKALLKRFKAKACAQDADANVSVLKVEMKSSTQDAFVRSSKHILRFDLFFLSPNRDAIVPASGRMRKHYYRL------RSIDRSIVLSIKTPKRSPASARSRGHRSRSVSLSRGDQDRRRHFSLPVSNSSPSD----TYKTLLSNTKRFLKPMKMVTSGDNRNNPEERSPIFRPSPQAKWYGAARR---------GWIGEADE-----------MVEPGRGDTE------------------------------------------------------------SVGEGTVSSDDLEEEDELPSFIVLDCSKVTNIDASAARVCFLALQRVTETHGVSIAYAGLTNMMETLL--RHAISCDNVAVFPSFYPALDWCETQLIRSVASTDEETSGRLWASSHFHQ 1593
            SYIFSQT+F+ R  C SR++G +V ++E+AV L+ +DP+                             +VPL FFSATL FIA +LM+EWL E+R KLL +EYL+LL+TF AIQ+ GL+ GL++GI C+M+ FV SYASE  +TM+RVYKRSR +RPASQRR+L V+R+KILC+EL+GE+FFGS+  VL++V   LGL   P S      +  ++        AAA+                    RTP  +A    +Q                             +    ++ + A + SS +    D             A G      +R        S D  +   +     S A   +                  R  S+  ++ + S     T  T+ S+ +                 P   SP F+P+  A +               G++                ++EPGR   +                                                            SVG   +   +   + ++PSFI+ DCS +T IDA+AAR CFL LQR++  HG  IAYA LT  ME LL    A+  D +A++P+ Y AL WCET LIR+ +   +E    +W  +HFH+
Sbjct:  373 SYIFSQTIFTYRTHCRSRVVGLIVMIAEVAVFLLPIDPLIDKHAVLDAMSALKAELAGDCLTRLFGHRFVPLFFFSATLIFIAWELMIEWLLEVRSKLLWHEYLVLLLTFSAIQLFGLNTGLIIGIACAMLGFVTSYASESVHTMQRVYKRSRVVRPASQRRILAVHRDKILCMELRGEMFFGSAVSVLDEVREHLGLATAPASAAAAAERERMLGSLPLHRRAAAALRRCTRXXXXXXXXXXXXXLRTPRPSASNTPRQRXXXXXXXXXXXXXXXXXXXXXSRGFERPRARSATNGETARLLSSSN----DXXXXXXXXXXXXXAPGTYGSGSFRFDRSAFDASSDSGVDSGVGGSGGSAADVETGXXXXXXXXXXXXXXALVRLDSVAAASRTASSLNGGTLGTIPSSDEEGSSGAANAGGTPGVREPRGSSPAFQPARAAGYXXXXXXXXXXXXXXXGFLANQSAHSAAAAVAHTPLLEPGRQRRQRSVSAEGGAFAAAQDRAARMRYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRARQLSVGGTPLLPPNNMNDADVPSFIIFDCSMLTKIDATAARTCFLQLQRLSAKHGFCIAYARLTKDMEALLAAHGALDGDRIALYPTVYAALAWCETTLIRAASRQTDE----VWPLNHFHR 1032
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: A0A7S2P0D7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P0D7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.060e-28
Identity = 76/189 (40.21%), Postives = 124/189 (65.61%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQVN-----RNKILCVELKGELFFGSSRQVLEQVTGMLGLDKTPGSMRKSSVIS 561
            SYIFSQT+F+ R GC SRL+G  +  + L VC+  ++ ++  PL F  +TL FI  DL+ EWL +IREKL   EYL+LL TF+AIQ++G+D G++ G+  +++  V S  + + ++++RV KRSR +      +LLQ++       KI+ +EL G +FFGSS++V++++   +GL  +   ++K S+ S
Sbjct:  358 SYIFSQTIFTYRTGCHSRLVGVFIMAAYLFVCISPINILSVAPLFFLGSTLIFIGYDLLWEWLVDIREKLFLMEYLVLLTTFIAIQIIGMDFGIIFGVVVAVIDHVAS--TTRISSLQRVMKRSRAVWSNDHWQLLQLHGYHPSNPKIVTLELSGPVFFGSSQKVMDEIMDEIGLSVSEDEVKKMSMAS 544
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: A0A7S2XRS5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRS5_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.800e-28
Identity = 81/175 (46.29%), Postives = 114/175 (65.14%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQ-----VNRNKILCVELKGELFFGSSRQVLEQVTGMLGL 519
            SYIFSQT+F+ R GC SR +G +V +S LAV   TV+ +   PL F  +TL FI  DL+ EW+ EIR KLL  EY +LLVTF AIQ VG+D G+ +G+  ++  +V + A  + ++M RV+KRSR +    + R LQ     +N  KIL +E+KG +FFGSS Q+L  +T  +G+
Sbjct:  480 SYIFSQTIFTYRTGCKSRWIGILVALSFLAVVWSTVNVLQVTPLFFLGSTLIFIGFDLLYEWVIEIRHKLLLSEYCVLLVTFAAIQFVGIDGGIFLGVIIAVADYVFTNA--RASSMSRVHKRSRAVWKPEEWRQLQEHGYTINHPKILTLEVKGSVFFGSSLQLLNAITEEIGI 652
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: A0A8K1CKU8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKU8_PYTOL)

HSP 1 Score: 130 bits (327), Expect = 2.850e-28
Identity = 74/164 (45.12%), Postives = 113/164 (68.90%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQVNRNKILCVELKGELFFGSSRQVLEQV 501
            SYIFSQT+F+ R+  +SR++G  V +SE A+ L+ +  M+YVP  FF+ATL FIA+DLMVEWL  +  K+L  EY++L  +F+AI  V L++G+++GI  +++ F++ Y+  K   + R +KRS  +R  + R LL   R+ I+ +EL G LFFGSS ++LE V
Sbjct:  403 SYIFSQTIFTYRSKTNSRIVGVCVILSEFAIVLLPLSVMSYVPRFFFAATLIFIAIDLMVEWLIHVYHKVLLREYIVLWASFIAINWVSLELGMLLGIGFAILNFLLGYSQVK--VVNRAFKRSTAVRKYAARTLLAQKRDAIVYLELHGYLFFGSSVRILEDV 564
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: A0A7S1NAD9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NAD9_9EUGL)

HSP 1 Score: 129 bits (325), Expect = 4.170e-28
Identity = 75/165 (45.45%), Postives = 111/165 (67.27%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYA-SEKRNTMERVYKRSRCMRPASQRRLLQVNRNKILCVELKGELFFGSSRQVLEQV 501
            SYIFSQT+F+ RA  D+RL+G VV V ELA+C +  +   YVP  FF ATL FI +DLM EWL E+  +LL  EY +LL+TFVAI   GL+ GL++G+  + + FV  Y+  + + +++RV ++S   R   QR+ L+    +I+ +EL+G +FFGSS  +L++V
Sbjct:  218 SYIFSQTIFTCRAQIDNRLVGVVVAVLELAMCFLPFNLTDYVPNFFFGATLLFIGIDLMHEWLVEVYHRLLWREYAVLLLTFVAINATGLEEGLLMGLVIATIVFVYGYSRGQVQQSVKRVTRKSNVFRNFEQRKFLRDCTRQIVVLELRGSIFFGSSADILQEV 382
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: A0A067BSF2_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BSF2_SAPPC)

HSP 1 Score: 128 bits (322), Expect = 1.130e-27
Identity = 72/164 (43.90%), Postives = 114/164 (69.51%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQVNRNKILCVELKGELFFGSSRQVLEQV 501
            SYIFSQT+F+ R+  +SR++G  V +SE A+ ++ +  M+YVP  FF+ATL FIA+DL++EWL  +  K+L  EYL+L ++F+AI  V L++G+++GI  ++V F+I YA    N ++RVYK S  +R  + R ++   R+ I+ +EL G LFFG+S  ++E V
Sbjct:  371 SYIFSQTIFTYRSKTNSRVVGICVIISEFALVVLPISIMSYVPRFFFAATLIFIAIDLLLEWLVHVYHKVLFQEYLVLWLSFLAINAVNLELGMIIGIGFAIVNFLIGYAQV--NQVQRVYKSSTAIRNYAARSVIADKRDAIVVLELHGYLFFGTSVHIVEDV 532
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: K3WTS9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTS9_GLOUD)

HSP 1 Score: 126 bits (316), Expect = 6.900e-27
Identity = 72/164 (43.90%), Postives = 112/164 (68.29%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQVNRNKILCVELKGELFFGSSRQVLEQV 501
            SYIFSQT+F+ R+  +SR++G  V +SE A+ L+ +  M+YVP  FF+ATL FIA+DLMVEWL  +  K+L  EY++L ++F+AI  V L++G+++GI  +++ F+I YA  +   + R  ++S  +R  + R ++   R  I+ +EL G LFFGSS Q+LE V
Sbjct:  383 SYIFSQTIFTYRSKTNSRVVGVCVIISEFAIVLLPLSVMSYVPRFFFAATLIFIAIDLMVEWLVHVYHKILPREYVVLWMSFIAINWVSLELGMLLGIFFAILNFMIGYAQVR--VVNRKSRKSAAVRKYAARTIISQKRESIVYLELYGYLFFGSSVQILEDV 544
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: W2QZQ5_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QZQ5_PHYPN)

HSP 1 Score: 126 bits (316), Expect = 7.020e-27
Identity = 74/181 (40.88%), Postives = 120/181 (66.30%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQVNRNKILCVELKGELFFGSSRQVLEQVTGMLGLDKTPGSMRKSS 552
            SYIFSQT+F+ R+  +SR++G  V +SE A+ LV +  M+ VP  FF+ATL FIA+DLM+EWL  +  K+L  EY++L ++F+AI +V L++G+++GI  +++ F++ YA  +   + R  + S  +R  + R  L   R+ I+ +EL G LFFGSS Q+LE V   + + K+  +M++ S
Sbjct:  404 SYIFSQTIFTYRSKTNSRIVGVCVIISEFAIVLVPLSVMSLVPRFFFAATLIFIAIDLMMEWLVHVYHKILPREYVVLWLSFIAINMVSLELGMVLGIGFAIINFLLGYAQVR--VVSRKCRSSAAVRKLAARTFLGQKRDAIVYLELYGYLFFGSSVQILEDVQKAVHIRKSRAAMKQKS 582
[Close]
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Match: A0A5D6XKY5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKY5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 7.690e-27
Identity = 74/164 (45.12%), Postives = 108/164 (65.85%), Query Frame = 1 
Query:   10 SYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFFSATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVGIDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQVNRNKILCVELKGELFFGSSRQVLEQV 501
            SYIFSQT+F+ R   DSRL G +V + E+A+ L  V  +AYVP  FF A  T IA DLM EW+W  R K+L  E+ ++ VTF+A+  +GLD G+++GI  +   F++SY +   +++ RV KRSR  R   +R LLQ  R  I+ +EL G +FFGSS +++++V
Sbjct:  462 SYIFSQTIFTLRGQLDSRLNGVLVFLLEVALVLCPVSVIAYVPKVFFGALQTLIAADLMTEWMWHARHKMLFREFAIVWVTFLAMNALGLDAGIVLGIVVAGFNFIVSYIAV--SSVRRVVKRSRVERDLRERALLQTARLAIVTLELDGFIFFGSSVKMMDEV 623
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18995.5233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNQ9_ECTSI8.870e-11045.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZH57_9STRA1.540e-4929.34Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S2P0D7_9STRA1.060e-2840.21Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2XRS5_9STRA1.800e-2846.29Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A8K1CKU8_PYTOL2.850e-2845.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1NAD9_9EUGL4.170e-2845.45Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A067BSF2_SAPPC1.130e-2743.90Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
K3WTS9_GLOUD6.900e-2743.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2QZQ5_PHYPN7.020e-2740.88Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A5D6XKY5_9STRA7.690e-2745.12Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18995contigH-elongata_contig18995:644..5840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.1
Seed ortholog evalue4.5e-97
Seed eggNOG ortholog2880.D8LNQ9
KEGG koko:K03321
KEGG TC2.A.53.3
EggNOG free text desc.secondary active sulfate transmembrane transporter activity
EggNOG OGsCOG0659@1,KOG0236@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons9
Model size1599
Cds size1599
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.3910964-CDS-H-elongata_contig18995:643..8151622930086.3910964-CDS-H-elongata_contig18995:643..815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 644..815 +
1691679275.1565812-CDS-H-elongata_contig18995:643..8151691679275.1565812-CDS-H-elongata_contig18995:643..815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 644..815 +
1622930086.4074686-CDS-H-elongata_contig18995:1236..13161622930086.4074686-CDS-H-elongata_contig18995:1236..1316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 1237..1316 +
1691679275.1680276-CDS-H-elongata_contig18995:1236..13161691679275.1680276-CDS-H-elongata_contig18995:1236..1316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 1237..1316 +
1622930086.418376-CDS-H-elongata_contig18995:1762..18601622930086.418376-CDS-H-elongata_contig18995:1762..1860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 1763..1860 +
1691679275.1761997-CDS-H-elongata_contig18995:1762..18601691679275.1761997-CDS-H-elongata_contig18995:1762..1860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 1763..1860 +
1622930086.4286237-CDS-H-elongata_contig18995:2796..29441622930086.4286237-CDS-H-elongata_contig18995:2796..2944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 2797..2944 +
1691679275.1844754-CDS-H-elongata_contig18995:2796..29441691679275.1844754-CDS-H-elongata_contig18995:2796..2944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 2797..2944 +
1622930086.4411407-CDS-H-elongata_contig18995:3287..34841622930086.4411407-CDS-H-elongata_contig18995:3287..3484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 3288..3484 +
1691679275.1917841-CDS-H-elongata_contig18995:3287..34841691679275.1917841-CDS-H-elongata_contig18995:3287..3484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 3288..3484 +
1622930086.4559588-CDS-H-elongata_contig18995:3656..38691622930086.4559588-CDS-H-elongata_contig18995:3656..3869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 3657..3869 +
1691679275.199413-CDS-H-elongata_contig18995:3656..38691691679275.199413-CDS-H-elongata_contig18995:3656..3869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 3657..3869 +
1622930086.4691353-CDS-H-elongata_contig18995:4036..44631622930086.4691353-CDS-H-elongata_contig18995:4036..4463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 4037..4463 +
1691679275.206638-CDS-H-elongata_contig18995:4036..44631691679275.206638-CDS-H-elongata_contig18995:4036..4463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 4037..4463 +
1622930086.4818916-CDS-H-elongata_contig18995:4956..50731622930086.4818916-CDS-H-elongata_contig18995:4956..5073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 4957..5073 +
1691679275.2164795-CDS-H-elongata_contig18995:4956..50731691679275.2164795-CDS-H-elongata_contig18995:4956..5073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 4957..5073 +
1622930086.495561-CDS-H-elongata_contig18995:5693..58401622930086.495561-CDS-H-elongata_contig18995:5693..5840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 5694..5840 +
1691679275.2241652-CDS-H-elongata_contig18995:5693..58401691679275.2241652-CDS-H-elongata_contig18995:5693..5840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18995 5694..5840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18995.5233.1prot_H-elongata_contig18995.5233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18995 644..5840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18995.5233.1

>prot_H-elongata_contig18995.5233.1 ID=prot_H-elongata_contig18995.5233.1|Name=mRNA_H-elongata_contig18995.5233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=533bp
MNTSYIFSQTLFSRRAGCDSRLMGWVVTVSELAVCLVTVDPMAYVPLAFF
SATLTFIAVDLMVEWLWEIREKLLTYEYLLLLVTFVAIQVVGLDMGLMVG
IDCSMVTFVISYASEKRNTMERVYKRSRCMRPASQRRLLQVNRNKILCVE
LKGELFFGSSRQVLEQVTGMLGLDKTPGSMRKSSVISGGQAGPEAAASSG
NGNAEERTPGEAAQQWCGWALKALLKRFKAKACAQDADANVSVLKVEMKS
STQDAFVRSSKHILRFDLFFLSPNRDAIVPASGRMRKHYYRLRSIDRSIV
LSIKTPKRSPASARSRGHRSRSVSLSRGDQDRRRHFSLPVSNSSPSDTYK
TLLSNTKRFLKPMKMVTSGDNRNNPEERSPIFRPSPQAKWYGAARRGWIG
EADEMVEPGRGDTESVGEGTVSSDDLEEEDELPSFIVLDCSKVTNIDASA
ARVCFLALQRVTETHGVSIAYAGLTNMMETLLRHAISCDNVAVFPSFYPA
LDWCETQLIRSVASTDEETSGRLWASSHFHQRE
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mRNA from alignment at H-elongata_contig18995:644..5840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18995.5233.1 ID=mRNA_H-elongata_contig18995.5233.1|Name=mRNA_H-elongata_contig18995.5233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5197bp|location=Sequence derived from alignment at H-elongata_contig18995:644..5840+ (Himanthalia elongata Himel1 dioecious)
ATGAACACCAGCTATATATTTTCCCAGACGCTGTTTAGTCGGAGGGCGGG
GTGTGACTCCCGGCTGATGGGCTGGGTCGTAACGGTGTCGGAGCTGGCGG
TTTGCCTGGTGACCGTTGATCCTATGGCGTATGTGCCGCTTGCATTCTTC
TCTGCAACGCTCACCTTCATAGGTGGGACATGGTGGGACGCGGGATAGGG
TGGGACATGGTCTTTGCTTTTCTGTCGATCTGCCACGAAATATCCAGCAT
AATCAGTACATATAGTTTGACGTTTTAGTGTAATGTACTGTGTTTATCTG
GTTGGGATGCTTATGGGTGAAAATGCATGATTATAGATTATGCTGTGTCG
TAAATCGGATACTATGTTATGGCTGGAGTAATTAAGTGATTTATCCATTC
ATTCGGAAAATACCGTATTCTTGTTGAATCCAATACCGTACCACCGTACC
ACCGTATCATGTTCATAATGTTCCCAAAGTAGTAATGATGATGTAGGTGC
AAAAGGTTTTGTCGCCTTCGCCATTTCGTGCCCCGATTCCGCGCGTCGCT
TCGTCTCTCTTTCAATCTTATGCCGTGTCGCTGTTTGATTAAGCTGTGGA
CCTTATGGTAGAGTGGCTATGGGAAATACGGGAGAAGCTGCTGACATACG
AGTATCTGCTGCTCCTCGTCACGGTAACGCCCGCACAAAGTAAATTAGTA
TATGCCAAATCTAGCGACCAATACCAGTGGACCGTGGCATGGTAATACTG
TGAAATAGTATTAGACTTCGTGGGTGCGTCCGGCAAACGGCAACATGACG
TCATGATGATCTGCCGCAAATTTAGTCTTCACATACATCGTAGTGAGGTC
ATGATCAGCCGCCGTTGCCCGAGAGTTTTCCCCACGTCTCAATATTATTC
GAAGCGCATATACTCTTCAAACACGTGGTAGCCCTTAACGTTAGCATTTT
CTTCTATCTGGCTGTATTGGAGCCCGTCCCAGTAAGGATCTGGCTTTTGC
GGAACCGCGGAAGAGGTCGTTCGTCAGCACCCTCTGGGGCTATCTATCGA
CCCCCTTCCTTCCCTTAGCCTAGCCTTACAGAGATAATTCTAAAAGAGGA
TACTTTCTCTTTATCTCAGTTTGTGGCCATCCAAGTCGTGGGGCTGGACA
TGGGCCTCATGGTAGGCATTGACTGCTCGATGGTGACGTTCGTGATCAGC
TACGCTTCGGAGAAACGGTCAGTCAAAGAAGAGAAGGGGCGTCGTCGATC
TCGATCTCGAATTGGGGGGTGGGCAAGGGGCGCCGTCAAGAATACTAATC
TCACCCTACCAGTACCTCCCTCGTCTCACCGCAAGAGGAATCCATTCCTT
TGAGACTATTCCGTGTCTGCTTGGCCGGTCGTTGGGTCTGTTTATGGTTT
TCCATTCGGTTTTTCGGTCTATTATTGTTTGGTTTTTCGTTTGGTTTTCG
TTTTGGGTGTTTGTTTGTTTGCGTTATTTTCTTTTTCTTTTTCGGTTGGT
GGTTTTTCGATCGGTTTTCGGGAAAGATCTAGAGTATATGTTTCAATATA
CCGAAAACCAAAGCATTTATCATTCACTTTATCTTCCAACGGGGCTGTAA
ACATTATGGGCTTACCAACCCGACCTACCGAAACGATCTCCCTAGTGCAT
ATCGGCTATCGTACTTTGTTACTTAAGCACTCATGTTCTCACGTTTTCCG
CTGCAGAAACAAGATAACCCATAACCGTAGTCATAACCCTTAGAAATGAG
CCCACAATTTCAGCACTACTGACCAACGTTATCACCAATTAGACTATTAG
CCTGTTAGACTACTGGCCTACTCGGGGGTGAAAATGTGCAAAACATAAAA
GTGAAGGCTTTGTTTGTGCACCCCTAGGAAGGACGGTCGGTTACCGATGT
TATATGCGCGTCTTTTCACCTCAATTCCGCCTCATTATCAGTGCTTGACG
AGCCGTTAATTTACCCAACATGGCAACAACTGGCAGCAAGCAGCAACTAC
CCAACTAACTCTATTAATAGTGATGGAAATATTAATACCAACAATAGACT
ATACTAGACCAGACTAGACGATATTATCTTTAATTTAAAGTATAACTTGT
TCTATAATAAGCACTTCCCGCTCGTTTTCCTCTAATATTTCCTCGACGGG
CAGGAACACCATGGAGAGGGTCTACAAGCGAAGCCGGTGCATGCGTCCGG
CCTCACAGCGTCGCCTCCTGCAGGTGAACAGGAACAAGATTCTATGTGTG
GAGCTAAAAGGCGAGCTTTTCTTTGGATCCTCTCGACAAGTGCTAGAGCA
GGTGAGGTCAACTTTATTTTTCATCCGATCTATGTACTAATTTGGGTATA
TAAATTATAAAGGTTTGTCTTTTGGTTTTGAGGAGAGCAACATTTCAGCA
ACATTTCAAGCCATTTGTTTGCAAATTGAGCTATGTACTGGTAGCCAGTA
AAAGCATAGAAAAAAGCCTTTTGCCACACAAGTCAGATTATACAATATCA
TACCCTGGTACATAATTATACCAGTACAATCATATATGATCCAATATCCA
CAATCACCACGAAGAGGGTGCTTTTTGGTACCAGTTTGCGCATTTTCGGT
GCTTATTGTCACGGGTATTTGGGGGATGACGGATGACTGGGCAGGTGACG
GGCATGCTGGGACTGGACAAGACTCCGGGCAGCATGCGTAAAAGTTCGGT
CATAAGTGGAGGACAAGCAGGGCCGGAGGCTGCGGCGAGTAGTGGCAATG
GGAATGCCGAGGAGCGCACCCCCGGGGAAGCTGCTCAGCAGTGGTGCGGC
TGGGCTTTGAAGGCGCTGTTGAAGCGGTTCAAAGCCAAAGCGTGAGTTAG
AGGGGGAAGTTTTCGTCCCCCCCCCCCCGCTTTTCCTCACACTTGGGCCT
AATATCAAGTAATATAAAGTAATACGAAGTTTACCTTGTGGTGTCAACCG
CCACAGTGAGAAGTCAAGTCAAATCAAGTCAAATGCAAGTGGATGAGAAG
AGTCTCATCTCAGGTGCGCGCAGGATGCCGACGCGAACGTATCGGTTCTC
AAGGTGGAAATGAAGTCGAGCACCCAGGATGCTTTTGTTCGCTCCTCGAA
ACACATTTTGCGCTTTGACTTGTTTTTTTTGTCTCCCAACCGCGACGCCA
TTGTTCCTGCGTCAGGCCGCATGCGAAAGCACTATTATCGTTTGCGATCG
ATCGATCGATCAATCGTTTTATCCATGTTCTGGTAAATCGATCGATCGAC
GAAGGGTGGCGCGCTTGCAATAGCATTGATACGACACTTACACCGATCTT
CTTCGCCCCCTCTTGTTTACGTCACCCGACCCATTCTCCTTGTTCCCTTC
GCTGAATCGATCACACGGGACATGCGGACTGCGCGCCCTGCAGCAAAACT
CCAAAGCGTTCTCCAGCGTCAGCGCGATCTCGAGGCCACAGGTCTCGCTC
CGTCAGCCTGAGCCGCGGAGACCAGGATCGCCGACGACATTTTTCTCTGC
CGGTCTCCAACTCCTCCCCGAGCGATACCTACAAAACTTTACTTAGCAAT
ACGAAGAGGTTCTTGAAACCCATGAAGATGGTCACCTCTGGCGATAACAG
AAACAACCCCGAAGAACGTTCCCCCATATTTCGACCATCGCCCCAGGCGA
AATGGTACGGTGCAGCTCGGAGGGGGTGGATAGGGGAAGCCGACGAAATG
GTCGAGCCTGGAAGAGGCGACACCGAAAGCGTAGGGGAGGGCACTGTGTC
CTCGGATGACCTCGAGGAGGAGGACGAACTCCCGAGCTTCATTGTGCTGG
ATTGCTCGAAGGTTACAAACGTGGGTGTAAGGGGGATCGCGCTTTAGCCT
TCCGCGGCTGGCGGCTATTATTTCTATCTCCTGGGGGTGCCTTGATGATC
GTTGCTATGACGTGTCTGACTGTTCTTTGACTGTTATCTGACTCTTCCGA
CTGATCCAGCTGGTTTACGATTGGTGTTATTTGGAACCAATGGCTAAATA
TAGGAAATATAGGAAATGGTCCACGAGAGCTGGGGGAGCATGGAATGCGT
ATGCTCGTAATGGTCAGAGCAAATGTGAAGGGTCCTGACTCAAAAATATG
TTTCCGACCTAGCCAAATCATTTATGGCTTATGGAACACCCTCCCCGATA
CGTCACATAATACTATGCAACGCTGCACCTCACGCTTTAGACTCACGTTA
TACGCCATACTGTATGTGCCGTTATTCGTTGGACATTTTAGGTTATGTGT
CGTGCGTTCAATGTTTTGCGATTGTCGTTTAATGCCTTTTCAATGACCGT
TTATACCGCACAGATCGATGCCAGCGCGGCTCGCGTTTGCTTCCTAGCCC
TTCAGCGCGTCACGGAGACCCACGGCGTCTCGATTGCCTACGCCGGCCTG
ACAAACATGATGGAAACTCTGCTAAGGCATGTATACAGATCCCATCGATA
GCTTCACTTCTCAAGCATGTAGCAATACAGAGTTAAGTACATACCATTAG
TCGTATTCTTCCTGTCTCAAGGTGCACGATGAAATTTCCATGCAAAGATT
GTAACAAAGGAACATGCAACGGTTGTAACAGAGGAACATGCAATGGTTGT
AACAGAGGAACGCCCTAGGTTGTACGTGGTATAGTGTTTCATATCAGACT
GGGGGTGCTACGGTACAAAGGCACATCAGCATGGGACTGTACATGGCTTG
GCCGCAGCGCCGAAACCTCTGATCAGCGGCGGAAACCCCATCCTTTTACC
ATCGCCGAGAATGTCCCATTTTGTCGCATCATCCGACGGGCGTCTCTCCG
GAGATACCCCTCATAGCTTCCTCATCTGCAGGGATCAGAAGGCACAATAG
AGCACCCCCCCCCCTCTCGATATTATTTTTATTGTGCGCGTACGAACGAA
ATATCTTGGCGCAAAAAAGCAAAGTAACAAGAAAGAAGTGACGGTGAACG
AATCACGCGGTCTCCATCCACACCCCTAACCCCTTTGTGACCCCTTATTT
CCTCTATAAAATTTCGGTCTGCTGCTGGTTTTGTGTTTAGGAAACACGAG
GCGATCAGCTGCGACAACGTGGCCGTCTTTCCCAGTTTCTATCCGGCACT
TGACTGGTGCGAAACACAGCTTATCCGTTCGGTCGCTTCAACAGATGAAG
AGACCAGCGGCAGGCTTTGGGCCTCTAGTCACTTCCATCAGAGAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig18995:644..5840+

>mRNA_H-elongata_contig18995.5233.1 ID=mRNA_H-elongata_contig18995.5233.1|Name=mRNA_H-elongata_contig18995.5233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3198bp|location=Sequence derived from alignment at H-elongata_contig18995:644..5840+ (Himanthalia elongata Himel1 dioecious)
ATGAACACCAGCTATATATTTTCCCAGACGCTGTTTAGTCGGAGGGCGGG
GTGTGACTCCCGGCTGATGGGCTGGGTCGTAACGGTGTCGGAGCTGGCGG
TTTGCCTGGTGACCGTTGATCCTATGGCGTATGTGCCGCTTGCATTCTTC
TCTGCAACGCTCACCTTCATAGATGAACACCAGCTATATATTTTCCCAGA
CGCTGTTTAGTCGGAGGGCGGGGTGTGACTCCCGGCTGATGGGCTGGGTC
GTAACGGTGTCGGAGCTGGCGGTTTGCCTGGTGACCGTTGATCCTATGGC
GTATGTGCCGCTTGCATTCTTCTCTGCAACGCTCACCTTCATAGCTGTGG
ACCTTATGGTAGAGTGGCTATGGGAAATACGGGAGAAGCTGCTGACATAC
GAGTATCTGCTGCTCCTCGTCACGCTGTGGACCTTATGGTAGAGTGGCTA
TGGGAAATACGGGAGAAGCTGCTGACATACGAGTATCTGCTGCTCCTCGT
CACGTTTGTGGCCATCCAAGTCGTGGGGCTGGACATGGGCCTCATGGTAG
GCATTGACTGCTCGATGGTGACGTTCGTGATCAGCTACGCTTCGGAGAAA
CGTTTGTGGCCATCCAAGTCGTGGGGCTGGACATGGGCCTCATGGTAGGC
ATTGACTGCTCGATGGTGACGTTCGTGATCAGCTACGCTTCGGAGAAACG
GAACACCATGGAGAGGGTCTACAAGCGAAGCCGGTGCATGCGTCCGGCCT
CACAGCGTCGCCTCCTGCAGGTGAACAGGAACAAGATTCTATGTGTGGAG
CTAAAAGGCGAGCTTTTCTTTGGATCCTCTCGACAAGTGCTAGAGCAGGA
ACACCATGGAGAGGGTCTACAAGCGAAGCCGGTGCATGCGTCCGGCCTCA
CAGCGTCGCCTCCTGCAGGTGAACAGGAACAAGATTCTATGTGTGGAGCT
AAAAGGCGAGCTTTTCTTTGGATCCTCTCGACAAGTGCTAGAGCAGGTGA
CGGGCATGCTGGGACTGGACAAGACTCCGGGCAGCATGCGTAAAAGTTCG
GTCATAAGTGGAGGACAAGCAGGGCCGGAGGCTGCGGCGAGTAGTGGCAA
TGGGAATGCCGAGGAGCGCACCCCCGGGGAAGCTGCTCAGCAGTGGTGCG
GCTGGGCTTTGAAGGCGCTGTTGAAGCGGTTCAAAGCCAAAGCGTGACGG
GCATGCTGGGACTGGACAAGACTCCGGGCAGCATGCGTAAAAGTTCGGTC
ATAAGTGGAGGACAAGCAGGGCCGGAGGCTGCGGCGAGTAGTGGCAATGG
GAATGCCGAGGAGCGCACCCCCGGGGAAGCTGCTCAGCAGTGGTGCGGCT
GGGCTTTGAAGGCGCTGTTGAAGCGGTTCAAAGCCAAAGCGTGCGCGCAG
GATGCCGACGCGAACGTATCGGTTCTCAAGGTGGAAATGAAGTCGAGCAC
CCAGGATGCTTTTGTTCGCTCCTCGAAACACATTTTGCGCTTTGACTTGT
TTTTTTTGTCTCCCAACCGCGACGCCATTGTTCCTGCGTCAGGCCGCATG
CGAAAGCACTATTATCGTTTGCGATCGATCGATCGATCAATCGTTTTATC
CATGTGCGCGCAGGATGCCGACGCGAACGTATCGGTTCTCAAGGTGGAAA
TGAAGTCGAGCACCCAGGATGCTTTTGTTCGCTCCTCGAAACACATTTTG
CGCTTTGACTTGTTTTTTTTGTCTCCCAACCGCGACGCCATTGTTCCTGC
GTCAGGCCGCATGCGAAAGCACTATTATCGTTTGCGATCGATCGATCGAT
CAATCGTTTTATCCATCAAAACTCCAAAGCGTTCTCCAGCGTCAGCGCGA
TCTCGAGGCCACAGGTCTCGCTCCGTCAGCCTGAGCCGCGGAGACCAGGA
TCGCCGACGACATTTTTCTCTGCCGGTCTCCAACTCCTCCCCGAGCGATA
CCTACAAAACTTTACTTAGCAATACGAAGAGGTTCTTGAAACCCATGAAG
ATGGTCACCTCTGGCGATAACAGAAACAACCCCGAAGAACGTTCCCCCAT
ATTTCGACCATCGCCCCAGGCGAAATGGTACGGTGCAGCTCGGAGGGGGT
GGATAGGGGAAGCCGACGAAATGGTCGAGCCTGGAAGAGGCGACACCGAA
AGCGTAGGGGAGGGCACTGTGTCCTCGGATGACCTCGAGGAGGAGGACGA
ACTCCCGAGCTTCATTGTGCTGGATTGCTCGAAGGTTACAAACCAAAACT
CCAAAGCGTTCTCCAGCGTCAGCGCGATCTCGAGGCCACAGGTCTCGCTC
CGTCAGCCTGAGCCGCGGAGACCAGGATCGCCGACGACATTTTTCTCTGC
CGGTCTCCAACTCCTCCCCGAGCGATACCTACAAAACTTTACTTAGCAAT
ACGAAGAGGTTCTTGAAACCCATGAAGATGGTCACCTCTGGCGATAACAG
AAACAACCCCGAAGAACGTTCCCCCATATTTCGACCATCGCCCCAGGCGA
AATGGTACGGTGCAGCTCGGAGGGGGTGGATAGGGGAAGCCGACGAAATG
GTCGAGCCTGGAAGAGGCGACACCGAAAGCGTAGGGGAGGGCACTGTGTC
CTCGGATGACCTCGAGGAGGAGGACGAACTCCCGAGCTTCATTGTGCTGG
ATTGCTCGAAGGTTACAAACATCGATGCCAGCGCGGCTCGCGTTTGCTTC
CTAGCCCTTCAGCGCGTCACGGAGACCCACGGCGTCTCGATTGCCTACGC
CGGCCTGACAAACATGATGGAAACTCTGCTAAGGCATATCGATGCCAGCG
CGGCTCGCGTTTGCTTCCTAGCCCTTCAGCGCGTCACGGAGACCCACGGC
GTCTCGATTGCCTACGCCGGCCTGACAAACATGATGGAAACTCTGCTAAG
GCATGCGATCAGCTGCGACAACGTGGCCGTCTTTCCCAGTTTCTATCCGG
CACTTGACTGGTGCGAAACACAGCTTATCCGTTCGGTCGCTTCAACAGAT
GAAGAGACCAGCGGCAGGCTTTGGGCCTCTAGTCACTTCCATCAGAGAGA
AGCGATCAGCTGCGACAACGTGGCCGTCTTTCCCAGTTTCTATCCGGCAC
TTGACTGGTGCGAAACACAGCTTATCCGTTCGGTCGCTTCAACAGATGAA
GAGACCAGCGGCAGGCTTTGGGCCTCTAGTCACTTCCATCAGAGAGAA
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