mRNA_H-elongata_contig189942.5232.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig189942.5232.1
Unique Name	mRNA_H-elongata_contig189942.5232.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: A0A836CC02_9STRA (Coatomer subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC02_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.550e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI 114
            PQKHRVLVGFLATFLREEGGF+FKKAITDCIVEL+SAI
Sbjct:  414 PQKHRVLVGFLATFLREEGGFDFKKAITDCIVELMSAI 451

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: A0A7R9YCZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCZ5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.790e-14
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI 114
            P KHRVLVGFLATFLREEGGFEFK+ ITDCIVEL+SAI
Sbjct:   95 PNKHRVLVGFLATFLREEGGFEFKRCITDCIVELMSAI 132

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: D7FHC8_ECTSI (Coatomer subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHC8_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.270e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI 114
            P KHRVLVGFLATFLREEGGFEFKKAITDCIVEL++AI
Sbjct:  280 PLKHRVLVGFLATFLREEGGFEFKKAITDCIVELMTAI 317

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: A0A7S1U574_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U574_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.080e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI 114
            P KHRVLVGFLATFLREEGGFEFK+ ITDCIVEL++AI
Sbjct:  478 PNKHRVLVGFLATFLREEGGFEFKRCITDCIVELMTAI 515

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: A0A7S2CIT1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIT1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.150e-12
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI 114
            PQKHRVLVGFLA  LREEGGFEFKKAITD IVEL+ AI
Sbjct:   21 PQKHRVLVGFLAATLREEGGFEFKKAITDSIVELMHAI 58

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: A0A6U1MSQ3_9STRA (Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MSQ3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.520e-12
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI 114
            PQKHRVL+GF+ATFLREEGGFEFKK I D IV+L+ AI
Sbjct:  418 PQKHRVLIGFMATFLREEGGFEFKKTIVDSIVDLMQAI 455

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: A0A7S1C1K4_9STRA (Coatomer subunit gamma n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C1K4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.580e-11
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISA 111
            P KHRVLVGFL+ FLREEGGFEFKKAITD IV L+ A
Sbjct:  422 PAKHRVLVGFLSNFLREEGGFEFKKAITDAIVHLMDA 458

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: A0A7S2S5Q9_9STRA (Coatomer subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5Q9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.580e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI 114
            PQKHRVLVGFLA+ LREEGGF+FKK+ITD IV+LI  I
Sbjct:  417 PQKHRVLVGFLASTLREEGGFDFKKSITDAIVDLIHTI 454

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: D7FHC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC7_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.650e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI 114
            P K RVLVGFLATF RE+GGFEFKKAITDC  EL++AI
Sbjct:  952 PLKRRVLVGFLATFPREQGGFEFKKAITDCTGELMTAI 989

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BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Match: F0YM71_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM71_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 2.650e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1

Query:    1 PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI 114
            P KHRVLVGFLA FLREEGGF+FKKAI D IV L+ AI
Sbjct:  420 PLKHRVLVGFLANFLREEGGFDFKKAIVDAIVALMCAI 457

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot

BLAST of mRNA_H-elongata_contig189942.5232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CC02_9STRA	2.550e-15	94.74	Coatomer subunit gamma n=1 Tax=Tribonema minus Tax...	[more]
A0A7R9YCZ5_9STRA	1.790e-14	89.47	Hypothetical protein (Fragment) n=1 Tax=Pinguiococ...	[more]
D7FHC8_ECTSI	2.270e-14	92.11	Coatomer subunit gamma n=2 Tax=Ectocarpus TaxID=28...	[more]
A0A7S1U574_9STRA	1.080e-13	86.84	Hypothetical protein (Fragment) n=3 Tax=Pinguiochr...	[more]
A0A7S2CIT1_9STRA	1.150e-12	86.84	Hypothetical protein (Fragment) n=1 Tax=Florenciel...	[more]
A0A6U1MSQ3_9STRA	8.520e-12	78.95	Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica...	[more]
A0A7S1C1K4_9STRA	7.580e-11	81.08	Coatomer subunit gamma n=2 Tax=Corethron hystrix T...	[more]
A0A7S2S5Q9_9STRA	7.580e-11	78.95	Coatomer subunit gamma n=1 Tax=Rhizochromulina mar...	[more]
D7FHC7_ECTSI	2.650e-10	78.95	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
F0YM71_AURAN	2.650e-10	78.95	Coatomer subunit gamma n=1 Tax=Aureococcus anophag...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig189942	contig	H-elongata_contig189942:250..363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	74.3
Seed ortholog evalue	1.3e-11
Seed eggNOG ortholog	2880.D7FHC8
Preferred name	COPG
KEGG ko	ko:K17267
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0005911,GO:0009506,GO:0009507,GO:0009536,GO:0012505,GO:0012506,GO:0016020,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0055044,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.	intracellular protein transport
EggNOG OGs	COG5240@1,KOG1078@2759
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131,ko04147
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	114
Cds size	114
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930086.3401134-CDS-H-elongata_contig189942:249..363	1622930086.3401134-CDS-H-elongata_contig189942:249..363	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig189942 250..363 +
1691679275.1444447-CDS-H-elongata_contig189942:249..363	1691679275.1444447-CDS-H-elongata_contig189942:249..363	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig189942 250..363 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig189942.5232.1	prot_H-elongata_contig189942.5232.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig189942 250..363 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig189942:250..363+
coding sequence from alignment at H-elongata_contig189942:250..363+

protein sequence of mRNA_H-elongata_contig189942.5232.1

>prot_H-elongata_contig189942.5232.1 ID=prot_H-elongata_contig189942.5232.1|Name=mRNA_H-elongata_contig189942.5232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
PQKHRVLVGFLATFLREEGGFEFKKAITDCIVELISAI

mRNA from alignment at H-elongata_contig189942:250..363+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig189942.5232.1 ID=mRNA_H-elongata_contig189942.5232.1|Name=mRNA_H-elongata_contig189942.5232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig189942:250..363+ (Himanthalia elongata Himel1 dioecious)
CCCCAAAAGCACCGCGTCCTGGTGGGATTCCTGGCTACATTCCTTCGTGA
GGAGGGAGGGTTCGAGTTCAAGAAGGCCATCACCGACTGCATCGTGGAGC
TCATTTCCGCCATC

Coding sequence (CDS) from alignment at H-elongata_contig189942:250..363+

>mRNA_H-elongata_contig189942.5232.1 ID=mRNA_H-elongata_contig189942.5232.1|Name=mRNA_H-elongata_contig189942.5232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig189942:250..363+ (Himanthalia elongata Himel1 dioecious)
CCCCAAAAGCACCGCGTCCTGGTGGGATTCCTGGCTACATTCCTTCGTGA
GGAGGGAGGGTTCGAGTTCAAGAAGGCCATCACCGACTGCATCGTGGAGC
TCATTTCCGCCATCCCCCAAAAGCACCGCGTCCTGGTGGGATTCCTGGCT
ACATTCCTTCGTGAGGAGGGAGGGTTCGAGTTCAAGAAGGCCATCACCGA
CTGCATCGTGGAGCTCATTTCCGCCATC