mRNA_H-elongata_contig1064.523.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1064.523.1
Unique NamemRNA_H-elongata_contig1064.523.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 3.970e-38
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKE---GYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D MGP+ P AK     + Y    T  +++MKE++LL+ K +  E  H YNM V    G RIETIRCDKGGE TG +F   C ++ I ++  AT +PQQ GVS+R G TLA +  CL+K+G+FP  +WG+   TA YL N SPHS L
Sbjct:  103 QLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.660e-38
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKE---GYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D MGP+ P AK     + Y    T  +++MKE++LL+ K +  E  H YNM V    G RIETIRCDKGGE TG +F   C ++ I ++  AT +PQQ GVS+R G TLA +  CL+K+G+FP  +WG+   TA YL N SPHS L
Sbjct:  427 QLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 577
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 7.660e-38
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKE---GYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D MGP+ P AK     + Y    T  +++MKE++LL+ K +  E  H YNM V    G RIETIRCDKGGE TG +F   C ++ I ++  AT +PQQ GVS+R G TLA +  CL+K+G+FP  +WG+   TA YL N SPHS L
Sbjct:  103 QLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 9.110e-38
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKE---GYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D MGP+ P AK     + Y    T  +++MKE++LL+ K +  E  H YNM V    G RIETIRCDKGGE TG +F   C ++ I ++  AT +PQQ GVS+R G TLA +  CL+K+G+FP  +WG+   TA YL N SPHS L
Sbjct:  103 QLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 9.160e-38
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKE---GYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D MGP+ P AK     + Y    T  +++MKE++LL+ K +  E  H YNM V    G RIETIRCDKGGE TG +F   C ++ I ++  AT +PQQ GVS+R G TLA +  CL+K+G+FP  +WG+   TA YL N SPHS L
Sbjct:  103 QLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.010e-37
Identity = 71/151 (47.02%), Postives = 94/151 (62.25%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKE---GYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D MGP+ P AK     + Y    T  +++MKE++LL+ K +  E  H YNM V    G RIETIRCDKGGE TG +F   C ++ I ++  AT +PQQ G S+R G TLA +  CL+K+G+FP  +WG+   TA YL N SPHS L
Sbjct:  479 QLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 629
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 7.470e-37
Identity = 71/151 (47.02%), Postives = 94/151 (62.25%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKE---GYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D MGP+ P AK     + Y    T  +++MKE++LL+ K +  E  H YNM V    G RIETIRCDKGGE TG +F   C ++ I ++  AT +PQQ G S+R G TLA +  CL+K+G+FP  +WG+   TA YL N SPHS L
Sbjct:  103 QLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 7.860e-37
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKE---GYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D MGP  P AK     + Y    T  +++MKE++LL+ K +  E  H YNM V    G RIE IRCDKGGE TG +F   C ++ I ++  AT +PQQ GVS+R G TLA +  CL+K+G+FP  +WG+   TA YL N SPHS L
Sbjct:  299 QLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIEAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 449
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.760e-36
Identity = 70/151 (46.36%), Postives = 93/151 (61.59%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKE---GYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D MGP+ P AK     + Y    T  +++MKE++LL+ K +  E  H YNM V    G RIETIRCDKGGE  G +F   C ++ I ++  AT +PQQ GVS+R G TLA +  CL+K+G+FP  +WG+   TA YL N S HS L
Sbjct:  444 QLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSSHSAL 594
[Close]
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 6.960e-36
Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 1 
Query:    4 ELVYTDFMGPMTPAAKEG---YKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVVPLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRGGLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSIL 447
            +LV  D +GP+ P AK     + Y    T  ++++KE++LL+ K    E  H YN+ V    G RIETIRCDKGGE TG +F   C ++ I ++  AT +PQQ GVS+R G TLA +  CL+K+G+FP  +WG+   TA YL N SPHS L
Sbjct:  103 QLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1064.523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCM0_9PHAE3.970e-3847.68Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KVF6_9PHAE5.660e-3847.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE7.660e-3847.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE9.110e-3847.68Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE9.160e-3847.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE2.010e-3747.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1R7_9PHAE7.470e-3747.02Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JSL6_9PHAE7.860e-3747.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J8P7_9PHAE3.760e-3646.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ1_9PHAE6.960e-3645.70Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1064contigH-elongata_contig1064:9708..10157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.8
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.8816485-CDS-H-elongata_contig1064:9707..101331622929594.8816485-CDS-H-elongata_contig1064:9707..10133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1064 9708..10133 -
1691679083.7979364-CDS-H-elongata_contig1064:9707..101331691679083.7979364-CDS-H-elongata_contig1064:9707..10133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1064 9708..10133 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.8978395-UTR-H-elongata_contig1064:10133..101571622929594.8978395-UTR-H-elongata_contig1064:10133..10157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1064 10134..10157 -
1691679083.8073406-UTR-H-elongata_contig1064:10133..101571691679083.8073406-UTR-H-elongata_contig1064:10133..10157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1064 10134..10157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1064.523.1prot_H-elongata_contig1064.523.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1064 9708..10133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1064.523.1

>prot_H-elongata_contig1064.523.1 ID=prot_H-elongata_contig1064.523.1|Name=mRNA_H-elongata_contig1064.523.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MGPMTPAAKEGYKYISMFTKTFSRMKEIFLLKGKVEAVELSHQYNMTVVV
PLGLRIETIRCDKGGEYTGMKFGTLCIDADINVKCNATTSPQQNGVSDRG
GLTLAQIKMCLMKEGNFPACLWGKPFFTATYLSNGSPHSILR
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mRNA from alignment at H-elongata_contig1064:9708..10157-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1064.523.1 ID=mRNA_H-elongata_contig1064.523.1|Name=mRNA_H-elongata_contig1064.523.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig1064:9708..10157- (Himanthalia elongata Himel1 dioecious)
ATAGAGCTGGTTTACACGGACTTCATGGGACCCATGACCCCTGCGGCCAA
GGAAGGGTACAAGTACATCAGCATGTTCACCAAAACATTCTCCCGCATGA
AGGAGATATTCCTACTAAAGGGCAAAGTGGAAGCTGTCGAATTGTCACAT
CAGTACAACATGACGGTGGTTGTTCCGCTGGGACTACGCATCGAGACCAT
CCGATGCGACAAGGGTGGTGAGTACACTGGAATGAAGTTCGGCACTCTTT
GCATCGACGCCGATATAAACGTGAAGTGCAACGCAACCACCTCGCCTCAG
CAAAATGGGGTGTCCGATAGAGGCGGGCTGACACTAGCCCAGATCAAGAT
GTGTCTGATGAAGGAGGGGAACTTCCCTGCCTGTCTGTGGGGGAAACCAT
TCTTCACGGCTACGTACCTGTCCAACGGGTCTCCCCATTCCATTCTGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig1064:9708..10157-

>mRNA_H-elongata_contig1064.523.1 ID=mRNA_H-elongata_contig1064.523.1|Name=mRNA_H-elongata_contig1064.523.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig1064:9708..10157- (Himanthalia elongata Himel1 dioecious)
ATGGGACCCATGACCCCTGCGGCCAAGGAAGGGTACAAGTACATCAGCAT
GTTCACCAAAACATTCTCCCGCATGAAGGAGATATTCCTACTAAAGGGCA
AAGTGGAAGCTGTCGAATTGTCACATCAGTACAACATGACGGTGGTTGTT
CCGCTGGGACTACGCATCGAGACCATCCGATGCGACAAGGGTGGTGAGTA
CACTGGAATGAAGTTCGGCACTCTTTGCATCGACGCCGATATAAACGTGA
AGTGCAACGCAACCACCTCGCCTCAGCAAAATGGGGTGTCCGATAGAGGC
GGGCTGACACTAGCCCAGATCAAGATGTGTCTGATGAAGGAGGGGAACTT
CCCTGCCTGTCTGTGGGGGAAACCATTCTTCACGGCTACGTACCTGTCCA
ACGGGTCTCCCCATTCCATTCTGAGAATGGGACCCATGACCCCTGCGGCC
AAGGAAGGGTACAAGTACATCAGCATGTTCACCAAAACATTCTCCCGCAT
GAAGGAGATATTCCTACTAAAGGGCAAAGTGGAAGCTGTCGAATTGTCAC
ATCAGTACAACATGACGGTGGTTGTTCCGCTGGGACTACGCATCGAGACC
ATCCGATGCGACAAGGGTGGTGAGTACACTGGAATGAAGTTCGGCACTCT
TTGCATCGACGCCGATATAAACGTGAAGTGCAACGCAACCACCTCGCCTC
AGCAAAATGGGGTGTCCGATAGAGGCGGGCTGACACTAGCCCAGATCAAG
ATGTGTCTGATGAAGGAGGGGAACTTCCCTGCCTGTCTGTGGGGGAAACC
ATTCTTCACGGCTACGTACCTGTCCAACGGGTCTCCCCATTCCATTCTGA
GA
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