mRNA_H-elongata_contig189860.5230.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189860.5230.1
Unique NamemRNA_H-elongata_contig189860.5230.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A8F0JZT7_9PHAE (Cytochrome c6 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZT7_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 2.160e-66
Identity = 97/109 (88.99%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AVDINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDW 327
            MKNFFFGFFIASLTLTSFYTPA AVD+ HGEN+FTANCSACHAGGNNVIMPEKTLKKEAL+ NEMNSV AITYQVTNGKNAMPAFGGRL+D DI+DVANFVL QSD+DW
Sbjct:    1 MKNFFFGFFIASLTLTSFYTPAEAVDLTHGENIFTANCSACHAGGNNVIMPEKTLKKEALANNEMNSVNAITYQVTNGKNAMPAFGGRLTDADISDVANFVLGQSDSDW 109
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BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A2R4QPS7_9PHAE (Cytochrome c6 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS7_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.350e-60
Identity = 93/110 (84.55%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AVDINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDWN 330
            MK FFFG FI  LTL SFYT   AVDINHGENVFTANCSACHAGGNNVIMPEKTLKK+ALSTN+M+SV AITYQVTNGKNAMPAFGGRLSD DI DVA+FVLSQS+ DWN
Sbjct:    1 MKKFFFGLFIPYLTLISFYTSVQAVDINHGENVFTANCSACHAGGNNVIMPEKTLKKDALSTNQMDSVSAITYQVTNGKNAMPAFGGRLSDDDIEDVASFVLSQSEKDWN 110
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BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A120HY83_9PHAE (Cytochrome c6 n=6 Tax=Sargassum TaxID=3015 RepID=A0A120HY83_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 7.800e-60
Identity = 91/110 (82.73%), Postives = 97/110 (88.18%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AVDINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDWN 330
            MKNFFFG FI  +T+  F TP  A DINHGENVFTANCSACHAGGNNVIMPEKTL+KEALSTN+MNSVGAITYQVTNGKNAMPAFGGRLSD DI DVA+FVLSQS+  WN
Sbjct:    1 MKNFFFGLFIPYITMILFCTPVQAADINHGENVFTANCSACHAGGNNVIMPEKTLQKEALSTNQMNSVGAITYQVTNGKNAMPAFGGRLSDDDIEDVASFVLSQSEKSWN 110
[Close]
BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A0S0GBE4_COSCS (Cytochrome c6 n=20 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBE4_COSCS)

HSP 1 Score: 187 bits (475), Expect = 1.110e-59
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AVDINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDW 327
            MKNFFFGFFIA L L SF  PA AVDIN+GENVFTANCSACHAGGNNVIMPEKTLKKEALS N+M+SV AITYQVTNGKNAMPAFGGRL++ DI DVANFVLSQSD +W
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAVDINNGENVFTANCSACHAGGNNVIMPEKTLKKEALSQNKMDSVSAITYQVTNGKNAMPAFGGRLAESDIEDVANFVLSQSDKNW 109
[Close]
BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A5A4MJ73_9PHAE (Cytochrome c6 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJ73_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.570e-59
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AVDINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDWN 330
            MKNFF GFFI+ LTL SFY PA AVDIN+GE+VFTANCSACHAGGNNVIMPEKTLKK AL  N+M SV AITYQVTNGKNAMPAFGGRLS+ DI DVANFVLSQSD DWN
Sbjct:    1 MKNFFLGFFISCLTLISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKGALEENQMGSVKAITYQVTNGKNAMPAFGGRLSESDIEDVANFVLSQSDKDWN 110
[Close]
BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A6B7EVB8_9PHAE (Cytochrome c6 n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A6B7EVB8_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 8.830e-59
Identity = 89/109 (81.65%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AVDINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDW 327
            MKNFF GFFI+ L + SFY PA AVDIN+GE+VFTANCSACHAGGNNVIMPEKTLKK+AL TN+MNSV AITYQVTNGKNAMPAFGGRLS+ DI DVANFVLSQS+  W
Sbjct:    1 MKNFFLGFFISCLAMISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVNAITYQVTNGKNAMPAFGGRLSEEDIQDVANFVLSQSEKGW 109
[Close]
BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A8E8U4P1_9PHAE (Cytochrome c6 n=3 Tax=Alaria TaxID=2888 RepID=A0A8E8U4P1_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 7.490e-58
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AVDINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDW 327
            MKNFFFGFFIA L L SF  PA A+DIN+GEN+FTANCSACHAGGNNVIMPEKTLKK+AL+ N+MN++GAITYQVTNGKNAMPAFG RL++ DI DVANFV++QSD  W
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAIDINNGENIFTANCSACHAGGNNVIMPEKTLKKDALADNKMNTIGAITYQVTNGKNAMPAFGSRLAETDIEDVANFVITQSDKGW 109
[Close]
BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A8F0F6Q3_AKKLU (Cytochrome c6 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6Q3_AKKLU)

HSP 1 Score: 181 bits (459), Expect = 3.050e-57
Identity = 89/109 (81.65%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AVDINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDW 327
            MK FFFGFFIA LTL S + PA AVDIN+GEN+FTANCSACHAGGNNVIMPEKTLKK AL  N MNSVGAITYQVTNGKNAMPAFGGRLS+ DI DVANFVL+QS   W
Sbjct:    1 MKKFFFGFFIACLTLISSHNPAQAVDINNGENIFTANCSACHAGGNNVIMPEKTLKKNALEENSMNSVGAITYQVTNGKNAMPAFGGRLSEDDIEDVANFVLAQSGKGW 109
[Close]
BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A8F0JYP6_9PHAE (Cytochrome c6 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JYP6_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.340e-57
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AVDINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDWN 330
            MK FFFGFFIA LTL S + PA AVDIN+GEN+FTANCSACHAGGNNVIMPEKTLKKEALS N MN V AITYQVTNGKNAMPAFG RLS+ DI DVANFVLSQ+  DWN
Sbjct:    1 MKKFFFGFFIACLTLISSHNPAQAVDINNGENIFTANCSACHAGGNNVIMPEKTLKKEALSDNLMNKVEAITYQVTNGKNAMPAFGSRLSEDDIEDVANFVLSQAAKDWN 110
[Close]
BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Match: A0A8F0F8D4_9PHAE (Cytochrome c6 n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0F8D4_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.470e-57
Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = 1 
Query:    1 MKNFFFGFFIASLTLTSFYTPA*AV-DINHGENVFTANCSACHAGGNNVIMPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVANFVLSQSDNDW 327
            MKNFFFGFFIA L L SF  PA AV D+N+G N+FTANCSACHAGGNNVIMPEKTLKK+AL+TN+MNS+ AITYQVTNGKNAMPAFGGRLS+ DI DVANFVLSQ+D  W
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAVPDLNNGSNIFTANCSACHAGGNNVIMPEKTLKKDALATNQMNSISAITYQVTNGKNAMPAFGGRLSEPDIEDVANFVLSQADKGW 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189860.5230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZT7_9PHAE2.160e-6688.99Cytochrome c6 n=1 Tax=Desmarestia aculeata TaxID=6... [more]
A0A2R4QPS7_9PHAE1.350e-6084.55Cytochrome c6 n=3 Tax=Fucaceae TaxID=3010 RepID=A0... [more]
A0A120HY83_9PHAE7.800e-6082.73Cytochrome c6 n=6 Tax=Sargassum TaxID=3015 RepID=A... [more]
A0A0S0GBE4_COSCS1.110e-5984.40Cytochrome c6 n=20 Tax=Laminariales TaxID=2886 Rep... [more]
A0A5A4MJ73_9PHAE1.570e-5983.64Cytochrome c6 n=5 Tax=Scytosiphonaceae TaxID=2891 ... [more]
A0A6B7EVB8_9PHAE8.830e-5981.65Cytochrome c6 n=3 Tax=Ectocarpales TaxID=2877 RepI... [more]
A0A8E8U4P1_9PHAE7.490e-5877.98Cytochrome c6 n=3 Tax=Alaria TaxID=2888 RepID=A0A8... [more]
A0A8F0F6Q3_AKKLU3.050e-5781.65Cytochrome c6 n=1 Tax=Akkesiphycus lubricus TaxID=... [more]
A0A8F0JYP6_9PHAE4.340e-5781.82Cytochrome c6 n=1 Tax=Pseudochorda nagaii TaxID=74... [more]
A0A8F0F8D4_9PHAE4.470e-5780.00Cytochrome c6 n=4 Tax=Alariaceae TaxID=2887 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189860contigH-elongata_contig189860:118..450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue8.9e-21
Seed eggNOG ortholog2880.D1J772
Preferred namepetJ
KEGG koko:K08906
KEGG Pathwayko00195,map00195
EggNOG free text desc.Cytochrome C oxidase, cbb3-type, subunit III
EggNOG OGs2SB8G@2759,COG2010@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size186
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.2432663-UTR-H-elongata_contig189860:117..2641622930086.2432663-UTR-H-elongata_contig189860:117..264Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189860 118..264 +
1691679275.0983787-UTR-H-elongata_contig189860:117..2641691679275.0983787-UTR-H-elongata_contig189860:117..264Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189860 118..264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.2611668-CDS-H-elongata_contig189860:264..4501622930086.2611668-CDS-H-elongata_contig189860:264..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189860 265..450 +
1691679275.11074-CDS-H-elongata_contig189860:264..4501691679275.11074-CDS-H-elongata_contig189860:264..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189860 265..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189860.5230.1prot_H-elongata_contig189860.5230.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189860 265..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189860.5230.1

>prot_H-elongata_contig189860.5230.1 ID=prot_H-elongata_contig189860.5230.1|Name=mRNA_H-elongata_contig189860.5230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MPEKTLKKEALSTNEMNSVGAITYQVTNGKNAMPAFGGRLSDVDITDVAN
FVLSQSDNDWN*
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mRNA from alignment at H-elongata_contig189860:118..450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189860.5230.1 ID=mRNA_H-elongata_contig189860.5230.1|Name=mRNA_H-elongata_contig189860.5230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig189860:118..450+ (Himanthalia elongata Himel1 dioecious)
ATGAAGAATTTTTTTTTCGGTTTCTTTATCGCTTCATTAACTCTAACTAG
TTTTTATACTCCAGCCTAAGCAGTAGATATTAATCACGGAGAAAATGTTT
TTACTGCTAATTGTTCAGCATGCCATGCTGGTGGTAATAATGTTATTATG
CCTGAAAAAACTTTAAAAAAAGAGGCTTTATCAACTAATGAGATGAATAG
TGTTGGTGCTATTACTTATCAAGTAACAAATGGAAAAAATGCTATGCCAG
CTTTTGGTGGTCGTTTATCTGACGTAGATATTACAGATGTTGCTAATTTT
GTATTATCACAATCTGATAACGATTGGAACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig189860:118..450+

>mRNA_H-elongata_contig189860.5230.1 ID=mRNA_H-elongata_contig189860.5230.1|Name=mRNA_H-elongata_contig189860.5230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig189860:118..450+ (Himanthalia elongata Himel1 dioecious)
ATGCCTGAAAAAACTTTAAAAAAAGAGGCTTTATCAACTAATGAGATGAA
TAGTGTTGGTGCTATTACTTATCAAGTAACAAATGGAAAAAATGCTATGC
CAGCTTTTGGTGGTCGTTTATCTGACGTAGATATTACAGATGTTGCTAAT
TTTGTATTATCACAATCTGATAACGATTGGAACTAAATGCCTGAAAAAAC
TTTAAAAAAAGAGGCTTTATCAACTAATGAGATGAATAGTGTTGGTGCTA
TTACTTATCAAGTAACAAATGGAAAAAATGCTATGCCAGCTTTTGGTGGT
CGTTTATCTGACGTAGATATTACAGATGTTGCTAATTTTGTATTATCACA
ATCTGATAACGATTGGAACTAA
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