prot_H-elongata_contig18981.5228.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18981.5228.1
Unique Nameprot_H-elongata_contig18981.5228.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length624
Homology
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: D8LTZ2_ECTSI (DNA polymerase alpha subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ2_ECTSI)

HSP 1 Score: 903 bits (2333), Expect = 0.000e+0
Identity = 471/640 (73.59%), Postives = 529/640 (82.66%), Query Frame = 0
Query:    1 MESWTGFEAEVAKNKAAVTS--GAATPSASRNMSPPSATRSKTPA-IVTPRLGGQRVVHKMTSNDLRSSPPSVGAKRPMPPLSSPEPTAKSKIARQEGYG---SGLSPASVQSPTSLVRVVYANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGEVTPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIPKS-----SGDVS------NKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 623
            M SW GFE EVAK+KAA ++   A+T +AS                IVTPR  G+RVV+ +TS DL SS    G KRPM P SSP P A+SK+ARQ+G G   + LSP SVQSP  LVR VY++R NAGQK AS+N ALGLR  +V PSPR+AGTRCDV VD  VGA ARYRYMYTPLEERA+++EKGL+ALQ QME +FG  E+TPVGVPRQEQVV VGR+CCESTEGKINRASILLEGSRRDS GQR HLDLREL+SFALFPGQ VA QG+NGSGGRMVARGI +GVPRPLP+S P++L+R QHG ELGGG+ LSIFAA GPFTTSD+LVYEPLNDLLGAV+ A PDVVVL+GPFVD+EHP+VA GDA +E V+GGSE VDFETLF+LRLSEKL KL    RDLPTQFVLVPSLRDVFH+FVYPQPPF+DRV+GGVELGVGAY +E+MFVLD+PK+     SG  S       KRVHLAPNPAWLR+NE+TIGVSSTD LFDLSG+EVSAG  G NRLARLA HLLQQQSFYPLFPPPA SA QLDMRHAHRW +P+TPDVLLVPS+LAQFAR VQGCLCVNPGQL+KGTGGGTYAELAVHPMP++ L KKQEELADKP+AT+ HDV KRTCVEIRRI
Sbjct:   61 MSSWAGFETEVAKSKAAASTPPAASTGTASXXXXXXRXXXXXXXXXIVTPRPAGRRVVNTVTSEDLASS----GTKRPMLPFSSPNPKARSKLARQDGEGGDGASLSPTSVQSPPDLVRAVYSSRKNAGQKTASYNPALGLRGLSVAPSPRQAGTRCDVVVDGAVGAPARYRYMYTPLEERAAALEKGLVALQGQMERKFGLTEITPVGVPRQEQVVAVGRVCCESTEGKINRASILLEGSRRDSSGQRAHLDLRELQSFALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRAQHGAELGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDSEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDKLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGARTTSGGASAAAAARQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQGCLCVNPGQLSKGTGGGTYAELAVHPMPQETLAKKQEELADKPDATVEHDVAKRTCVEIRRI 696          
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A836CA88_9STRA (DNA polymerase alpha subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA88_9STRA)

HSP 1 Score: 463 bits (1192), Expect = 6.770e-152
Identity = 283/591 (47.88%), Postives = 345/591 (58.38%), Query Frame = 0
Query:   73 KRPMPPLSSPEPTAKSKIARQEGYGSGLSPA---SVQSPTSLVR--------------------VVYANRTNAGQKIASFNSALGLREQAVPPSPRRAGT-----RCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGEVTPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGG---------SEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIPKSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLP---STPDVLLVPSKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 623
            KRP+P L SP  +  +K AR  G G   SPA   SVQ      R                      YA+R NAG ++  +N +  +   A+              RC V+    VGA+ARYRYM+ PLEER+   E  LLA  A++      GE+TPVGVPRQE+V VVGR+ CES EG++ RAS LLEGS RDSGG R  L L  L SFALFPGQ VAA+GIN  G RM  RG+  G P P     PA                     A GP+TT DNL YEPLNDLL  V+   PDVVVL+GPFVDAEHP +A G A +  V GG         +EPVDFETLF+LR+ +KL ++L      PTQFVL+PS RD FHD  YPQPPF D V GG  LG+G YAD+ ++ L +P+ +      RV   PNPA   +       +S D LFDLS EE + G  G  RLARLA HLLQQ+SFYPL P  A + V LD R A   +L    + PDVLL+P +LAQFARDV+GC+CVNPG LT+G GGGTYA LA+HP+P+  LE       D P+  +PH V +RT +E+RRI
Sbjct:  130 KRPLPGLMSPPGSTVNKAART-GAGGFSSPAPSLSVQQTPVAARSGGGXXXXXXXXXXAAHMPQAAYADRANAGARVLEYNPSKLMHAGAIAAXXXXXXXXXXRQRCSVEPICGVGAAARYRYMFAPLEERSRLQEAALLAATAELARAHALGELTPVGVPRQEEVTVVGRVVCESGEGRMGRASALLEGSWRDSGGARAALALDALPSFALFPGQIVAARGINSGGMRMAVRGLLPGSPAP-----PAXXXXXXXXXXXXXXXXXXXXVAAGPYTTDDNLEYEPLNDLLAHVQETRPDVVVLMGPFVDAEHPLIAAGAAALP-VPGGXXXXXXXDAAEPVDFETLFRLRVCDKLERVLADPAH-PTQFVLIPSTRDAFHDATYPQPPFADAVAGGAPLGIGEYADDAVYTLGLPRDA------RVACLPNPAAFAVGGAVFAATSADSLFDLSCEEAAGGAGGAPRLARLADHLLQQRSFYPLRP--ARAGVPLDPRRAAALALAPRGAAPDVLLLPGRLAQFARDVRGCVCVNPGALTRGGGGGTYAALALHPLPRAELEAAAR---DAPDIAVPHGVAQRTALEVRRI 701          
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: W7TPC9_9STRA (DNA polymerase alpha subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC9_9STRA)

HSP 1 Score: 457 bits (1177), Expect = 6.010e-150
Identity = 254/511 (49.71%), Postives = 324/511 (63.41%), Query Frame = 0
Query:  116 YANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRF--GFGEVTPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIP-KSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 623
            Y NRTNAGQK  +   AL +                           +RYR+MYT LEERA + EK LL LQ  +  R      EVTPVGVP+QE V V+GR+CCE+ EG+IN+AS+LLEGSRRDSGG RV L+L +L +F+LFPGQ VA +G+N SG +MV R I EG+PRP   S   +++  QH     GG  LS+  A GP+TT+D+L YEPL DLL  +    PDV VL GPFVDA HP+VA G+  +       E VDFE+LFK+R+S  L  L  T   L ++ VLVPSL DVFHD     PP  DR+ GGV      + +E++  L +P  S  D ++KR++   NP++  +NE+ +GV++ D+L  LSG+EVS     GNRLARLA+HLLQQQSF+PLFPPPA    QLD+RHA    +P TPDVLL+PSKL  F +DV G LC+NPG LTKG GGGTYA L +HP+P + LE+        PE  + H+V +RT  EI RI
Sbjct:  206 YLNRTNAGQKAGTLPGALDIN------------------------LPSRYRFMYTTLEERARAQEKMLLRLQDDLVARGLEAEAEVTPVGVPKQETVTVIGRVCCEAPEGRINKASVLLEGSRRDSGGFRVKLELGQLPAFSLFPGQVVAVEGVNSSGFKMVVRRIIEGIPRPFLTSPAKKMLEFQHDSLYQGGGALSLLVAAGPYTTTDSLEYEPLEDLLKVIAARQPDVAVLCGPFVDANHPQVASGETEIAGAGEEKESVDFESLFKMRVSLFLEGLYDTNPTLASRIVLVPSLNDVFHD----HPPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGADKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSYNP--GNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHLRMPITPDVLLLPSKLTPFVKDVGGALCINPGTLTKGGGGGTYAMLHIHPLPAERLERMS------PETEVQHEVARRTHAEIVRI 678          
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: B8BYS5_THAPS (DNA polymerase alpha subunit B n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYS5_THAPS)

HSP 1 Score: 374 bits (959), Expect = 6.410e-117
Identity = 227/574 (39.55%), Postives = 317/574 (55.23%), Query Frame = 0
Query:   84 PTAKSKIARQEGYGSGLSPASVQSPTSLVRVVYANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGF--------------GEV--------TPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLREL-------RSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDR-VKGGVELGVGAYADEQMFVLDIPKSSGDVSN---KRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDV-QGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 623
            PTAKS    Q+  G+G S  +  +P SL   V  N  NA          +     +  P P    T               +R+M+TPL  RA ++E  +L +   +  ++                 EV        TPVG+P+Q +VV VGRIC E+ EG++NRASI LEGSR+DS G R+HLDL  L       +S++ FPGQ VA +GIN SG  M A  + EGVP P+  S   EL++  +GP+   G PLSI +  GPFTT DNL Y+PL D++  +    PDVV++ GPFVD   P V  G+  +   +G  + V +E LF+ + +  L ++     D+ TQFVLVPS  D+  + VYPQPP  ++ V  GV+     + +  +  ++I       ++   KRVH   NP  L+INE+++GV+S+DVLF +S +E +A  P G RL R+A HL+QQ+S+YPLFP  A+    LD+  +  W +P  PD+L+VPSKL  FAR V    + VNPG+LTK T GGTYA + VHPM K+ LEK  +       A M H V  R  V+I+RI
Sbjct:  170 PTAKSAPKYQDRTGTG-SLVTSYNPNSLPTAVEVNAQNADNATTQKTCTIQYHPSSTHPQPPTKSTP--------------FRHMFTPLATRAKALESRILTMSDSICEKYNIKSEEEEMLKYEHVSAEVVDDNMACWTPVGIPKQGKVVCVGRICNEAHEGRLNRASIRLEGSRKDSSGSRIHLDLNSLVTNNDNNQSYSFFPGQIVAVEGINSSGRTMQASRLYEGVPPPVEKSTAKELIKYNYGPDGQNGMPLSIVSMCGPFTTKDNLEYDPLVDMVMKISEDQPDVVIMCGPFVDGRQPLVQGGEPTITDEDGNEKKVSYENLFQTKFAALLEEMYANDPDMKTQFVLVPSTEDMICESVYPQPPLVNQEVTSGVKKFNDEFGNLGLNYVEIAGRENIKTSERTKRVHCVSNPCTLKINELSVGVTSSDVLFHISSDETNANLPPGGRLTRIAQHLIQQRSYYPLFP--AAKGACLDLSRSDEWEMPVQPDILIVPSKLTTFARKVLDTTVVVNPGELTKNTTGGTYAVIDVHPMKKEALEKGGD-------AEMEHGVQDRVRVDIKRI 719          
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A1Z5KI39_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI39_FISSO)

HSP 1 Score: 369 bits (948), Expect = 3.110e-116
Identity = 221/518 (42.66%), Postives = 314/518 (60.62%), Query Frame = 0
Query:  116 YANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDE-TVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGE---VTP---VGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFV--LDIPKSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGC-LCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 623
            Y  RT AGQ +++F SA   R     P  R    +C ++ D  +   S  YR M+T  E+RA+++ + LL +   + +++  G+   V P   VG+PR +QV  VGRIC  +  GKIN  S LLEGSR + GG RV LD   +  +++FPGQ VA +G+N +G ++  + + EG     P +     +R  H  +   G+PL +  A GPFTTSDN  Y+PL DLL  V+   PDVV+L GPFVD +HP V  G   ++  EG    V +ET F  ++S  L +LL     L TQFVLVPSL D   ++VYPQPPF DRV GG++  +       +    LD  +++ ++  +RVH  PNP  L+INE+ IG++STDVLF +S +E +A  P G+RLAR++ HLLQQ+S+YPLFPP  +  + +D ++  +WS+P  PDVL++PSKLA F+R V    + VNPG+LT+ T GGTYA + VHP  K +LE      A   +A +PH + +RT VEI+RI
Sbjct:  137 YETRTGAGQIVSTF-SAKEKRTATYVPLSR---PKCAIRKDSFSTNLSHTYRSMFTTTEQRATALNQQLLEMTKHLIDKYQLGQSDQVAPLEGVGIPRADQVCNVGRICNAAHAGKINATSCLLEGSRAE-GGVRVSLDWSGVSQYSVFPGQIVALEGMNPTGRKLQVQRLCEGAAA-APVTTRRSALRQYHL-QAQEGQPLKLVTAAGPFTTSDNFHYQPLQDLLHVVQQEQPDVVILTGPFVDLDHPAVQSGQTILQDEEGNDVIVPYETFFVHKISLLLEELLTEHPMLMTQFVLVPSLEDATAEWVYPQPPFQDRVPGGLQPNIPGADGITIGTMGLDYVETATELPCQRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPP--APGMNMDYQYMEQWSMPCQPDVLILPSKLACFSRTVMDTTIVVNPGRLTRDTVGGTYAIMEVHPFSKDVLE------AADDDAELPHALPERTEVEIKRI 639          
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A7S2ERG3_9STRA (DNA polymerase alpha subunit B n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERG3_9STRA)

HSP 1 Score: 369 bits (948), Expect = 9.140e-116
Identity = 219/545 (40.18%), Postives = 305/545 (55.96%), Query Frame = 0
Query:  116 YANRTNAGQKIASFN--SALGLREQAVPPSPRRAGTRCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRF--------------GFGEVTPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLREL--------RSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRV-KGGVELGVGAYADEQMFVLDIP-------KSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSA----VQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDV-QGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 623
            Y  R NAG  +AS+N  S   L   + P    +   +C              R+M+T  ++RA+++ K L+    +++  +                  +  VGVPRQE+V  +GRIC E+ EGK+NR S+LLEGSR  S G RV+LD+  L         SF+LFPGQ VA +GIN SG ++VA  + EG   P       E+       + G    + I    GP+TT DNL Y PL+DLL  ++   PDVV+L GPFVD +HP V  G+  ++  EG    +  E LF  R+S  L +L + +  L TQFVLVP L D   +FVYPQPP  DR+ KGG +L + +        L +        +     + KR+H  PNP  LRINE+TIG++STDVLF ++ +E +   P G+RLARL  HL+QQQS+YPL+PPP S+A    V LD++   +WS+   PD+L+VPSKL  FAR V    + +NPGQL++GT GGTYA + VHPM + + E K+E++       +   V  R CVEI+RI
Sbjct:  158 YEERKNAGATVASYNPHSLTPLSSSSAPHIFYKHVEKC--------------RFMFTTPQDRANALNKRLVEFGKRIQEVYDIKDMYDVEEDQEVALARLENVGVPRQEKVCCIGRICNEAHEGKLNRTSLLLEGSRHQSNGMRVNLDISPLLDANLETRSSFSLFPGQIVAVEGINASGRKLVAHKLCEGAAPPKAVLTAGEMKEFYKSEKEG----MKIMTCAGPYTTMDNLEYNPLSDLLQQIREEQPDVVILTGPFVDIKHPLVQSGNVEIDVGEGNMSKIPHEALFAQRISALLEQLFEDEEGLGTQFVLVPHLDDAVAEFVYPQPPLSDRLPKGGKQLNLSSAEAIDFGSLGLHHIESANRQPGQSTTPKRIHCVPNPCTLRINEVTIGITSTDVLFHMNCDEANGNLPPGSRLARLTQHLIQQQSYYPLYPPPVSNARNSSVNLDLKQMEKWSMECQPDILIVPSKLTTFARKVLDTTVAINPGQLSRGTAGGTYAVMDVHPMKRSLWEGKEEDVE------IDDGVQDRICVEIKRI 678          
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A1Z5K576_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K576_FISSO)

HSP 1 Score: 358 bits (918), Expect = 1.760e-111
Identity = 211/524 (40.27%), Postives = 311/524 (59.35%), Query Frame = 0
Query:  116 YANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDETV------GASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFG---EVTP---VGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRS-FALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFV--LDIPKSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGC-LCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 623
            Y  R  AGQ +++F +    +  A   +P  +  +C ++ + +         S  YR ++T  E+RA+++++ L+ +   +  ++  G   EV P   VG+PR +QV  +GRIC  +  GKIN  S+LLEGSR   GG RV +DL  L S +++FPGQ VA +G+N +G ++  + + EG       S   +L   Q+  +   G+P+ +  A GPFTTSDN  Y+P  DLL  V+   PDVV+L GPFVD  HP V  G   ++  +G    V +ET F  ++S  L +LL     L TQFVLVPSL D   ++VYPQPPF DRV GG++  +       +    LD  +++ ++  KRVH  PNP  L+INE+ IG++STDVLF +S +E +A  P G+RLAR++ HLLQQ+S+YPLFPP  +  + +D ++   WS+P  PD+LL+PSKLA F+R V    + VNPG+LT+ T GGTYA + VHP  K +LE   ++        +PH + +RT V I+RI
Sbjct:  153 YETRIGAGQIVSTFTAEH--KRTATNDNPLLSRPKCTIRSESSAFSTNNNNLSQAYRSLFTTTEQRATALDQQLIHMGQHLMEKYQLGQSDEVAPLEGVGIPRADQVCNIGRICNAAHYGKINATSVLLEGSRAAVGGARVAVDLSTLSSQYSVFPGQIVALEGMNPTGRKLQVQRLCEGAAAAPVTSRVRDL--RQYHLQAQQGQPVKLLTAAGPFTTSDNFQYQPWQDLLHVVQNEQPDVVILTGPFVDMNHPAVQSGQTALQDEDGNDVIVPYETFFMHKISLLLEELLTENPLLMTQFVLVPSLEDATAEWVYPQPPFQDRVSGGLQPNIPGADGITIGTMGLDYVETATELPAKRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPP--APGMNMDYQYMEYWSMPCQPDLLLLPSKLACFSRIVMDTTIVVNPGRLTRDTMGGTYAIIEVHPFAKDVLETADDD------DELPHALPERTEVIIKRI 664          
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A7S2FH66_9STRA (DNA polymerase alpha subunit B n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FH66_9STRA)

HSP 1 Score: 342 bits (876), Expect = 6.110e-106
Identity = 216/557 (38.78%), Postives = 316/557 (56.73%), Query Frame = 0
Query:   73 KRPMPPLSSPEPTAKSKIARQEGYGSGLSPASVQSPTSLVRVV---------YANRTNAGQKIASFNSALGLREQAVPPSPRRAGTR--CDVKV--------------DETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFG---FGEVTPVGVPRQEQVVVVGRICCEST-EGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWV--ESVEGGS---EPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIP-KSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPP----PASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQ-GCLCVNPGQLTKGTGGGTYAELAVHPMP 589
            KRP P  S+P      K+ R     +  SP+S+Q+P   + +V         YA R NAG       + + +   + P       +R  C + V               E+VG ++ YR+MYT + +RA+S+++    ++ ++    G       +PVGV  Q+ VV  GR+CC++  EGKIN+ SILLEG R + GGQR+ L L++L SFALFPGQ V  +GIN SG RMV + +  GVPRPLP    A++ + +  P       L +  A GPF  ++NL Y PL DLL     A  DV++L GPFVD  HP++  G   +  ++ +G +   E +D+  LF L++++ L  +         Q V+VPSL D FHD VYPQPP  D+ + GV+     + +E+ F ++IP  +  +V+ KR+HL  NPA LRINE+ +G+SSTD+L  +   E++       RL RLA HL+ QQSF+PLFP      A+  V LD+  + RW +P +PD+L++PSKLA FA  +  G L +NPGQ+ +G+GGGTYA L +HP P
Sbjct:   41 KRPHPTNSTPT-NGPIKVPRNN---TDFSPSSLQTPGQKIDIVSHPVTPSKSYATRKNAGDITLEMRAKIEVPTDS-PGKEINGMSRQPCHINVFGEPGSPAPESDSSHESVGVASHYRHMYTTVMDRAASLQRSFDHMEQELLAHAGKEHSSRRSPVGVRSQDPVVCFGRVCCDTLGEGKINKTSILLEGGRME-GGQRIELKLQDLSSFALFPGQWVLVEGINSSGPRMVVKRLMTGVPRPLPQ---AQITKKRTSP-------LRLVVASGPFCCTNNLDYAPLKDLLLNANSA--DVLILSGPFVDVAHPQLKSGVVLMAGDTDDGATCEMESLDYCNLFNLKVTQALEDMQDAHPSSTLQIVMVPSLADAFHDCVYPQPPLTDQSRKGVKSPW--FPEEKYFDVEIPFAAQTEVTGKRMHLVSNPAMLRINEVVVGISSTDILMSMGRAEIAENPKNKQRLPRLAEHLVNQQSFFPLFPANGGVKANEDVPLDLSQSERWRMPVSPDILILPSKLATFASTLSNGTLALNPGQVARGSGGGTYANLVIHPQP 577          
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A7S4EDL8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDL8_9STRA)

HSP 1 Score: 338 bits (868), Expect = 3.530e-105
Identity = 230/597 (38.53%), Postives = 325/597 (54.44%), Query Frame = 0
Query:   66 SPPSVGAKRPMP-PLSSPEPTAKSKIARQEGYGSGLSPASVQSPTSLVRVVYANRTNAG----------QKIASFNSALGLREQAVPPSPRRAGTRCDV-------------KVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGEVTP--VGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELR-SFALFPGQAVAAQG-INGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQ-MFVLDIPKSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGN------RLARLASHLLQQQSFYPLFPPPASSAV----QLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 623
            +PP    KRP+  P  +P P  K   A +    +  SP     P       Y +RTN G          Q+ A++     + ++AV  +   A T  DV                  VG + RYR+M+TP  ER ++++  L+    ++   F   +V P  +G   Q   +  GR+C ++ +G++N++S+ LEG R + GG RV LDL  +  S+ALFPGQ V   G   G  G ++AR I  G P P PAS PA+ ++  H  +    +PLSI+AA GP+TTSD+L Y PL DLL A + A PD VVL+GPFVDA+HP     D     ++ G E VD  TLF L+++  L KL+  + D PTQF+L P+ RD+  + V+PQPP      G       ++ DE  +  L++P         +VH+  NP   +INE+ +GV++TDVLF LS +E+       +      R+ARLASHLL Q+SFYPLFPPP+ S+      +D+R   +W LP  PDVL+ PSKL  FARDVQGCL +NPG L+KG GGGT+++L VHP            L+ + + T+ H V  RT  EI RI
Sbjct:   11 APPPSTLKRPLENPTVTPAPRKKVSFAGETPTATETSPK----PPPSTATKYKDRTNGGATVDVANKHLQRRAAWGDLGSVSQRAVVVA---APTEKDVDAWTSSKAYGGTESTQLAVGTATRYRHMFTPPGERCAALDASLVEAAQKIRENFSEKDVEPCAIGTATQTPALFCGRVCLDALDGRLNKSSVCLEGERSE-GGFRVPLDLTAVEGSYALFPGQVVGVVGSAPGEDGTILARSIILGSPAP-PASTPAKQMQEFHTKQQNN-QPLSIWAASGPYTTSDDLDYSPLKDLLAACRAAKPDAVVLLGPFVDADHPLAKNND-----LKEGDESVDAATLFVLKVAWALEKLV-IEEDCPTQFILAPATRDLVAEPVFPQPPLDAPPLGAQNDARPSWQDEMPVGSLELPS--------QVHVVGNPGLFKINEVVVGVTATDVLFQLSSQELFHNGRDNSEIAKMPRVARLASHLLSQRSFYPLFPPPSMSSTVADAPVDLRQHGKWKLPLQPDVLITPSKLQPFARDVQGCLVLNPGHLSKGAGGGTFSQLTVHP------------LSAEGDETVVHGVPARTRAEITRI 571          
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A7S2F9H8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9H8_9STRA)

HSP 1 Score: 327 bits (837), Expect = 1.860e-103
Identity = 182/364 (50.00%), Postives = 239/364 (65.66%), Query Frame = 0
Query:  265 QGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIPKSSG-DVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPP---ASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQ-GCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 623
            +GIN SG RMV + + EGVPRPLP S P EL++L HG    G +PLSI  A GPF T+DNL YEPL+DLL + K    DV+VL GPFVD  HP+++ GD  +E+ E G E VD++T F  ++S  L  L +   D   Q VLVPSL D  HD+V+PQPPF DRV+GG +     + +E++F LDIP + G    +KRVH   NPA +++NE+ +GV+STDVL  L   E++      NRL RLA HLL+QQSF+PLFP     A   V +DM  + R  +P +PDVLLVPS+LA FAR +  G L VNPGQL +G+GGGT+A L +  +PK+ LE   +  A +P   +PH V +RT V+IRRI
Sbjct:    1 EGINSSGTRMVVKNLCEGVPRPLPRSAPDELMKLHHGV---GSQPLSIAVAAGPFCTNDNLDYEPLSDLLHSAKHN--DVLVLCGPFVDVNHPKLSGGDVDIET-EDGVESVDYDTFFNFKISGVLETLYEENPDTKLQVVLVPSLHDAHHDYVFPQPPFADRVEGGQQSPF--FPEEKLFTLDIPHTGGLGEDSKRVHCVSNPAMIKVNEVVVGVTSTDVLMQLGKAEIAQRPMSSNRLGRLAEHLLKQQSFHPLFPANGGVAGEPVPVDMTKSDRLRMPMSPDVLLVPSRLATFARKLDNGTLVVNPGQLARGSGGGTFASLTIGGLPKEALE---QVAAKEPSTPIPHQVAERTAVQIRRI 353          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ2_ECTSI0.000e+073.59DNA polymerase alpha subunit B n=2 Tax=Ectocarpus ... [more]
A0A836CA88_9STRA6.770e-15247.88DNA polymerase alpha subunit B n=1 Tax=Tribonema m... [more]
W7TPC9_9STRA6.010e-15049.71DNA polymerase alpha subunit B n=2 Tax=Monodopsida... [more]
B8BYS5_THAPS6.410e-11739.55DNA polymerase alpha subunit B n=1 Tax=Thalassiosi... [more]
A0A1Z5KI39_FISSO3.110e-11642.66DNA polymerase alpha subunit B n=1 Tax=Fistulifera... [more]
A0A7S2ERG3_9STRA9.140e-11640.18DNA polymerase alpha subunit B n=2 Tax=Ditylum bri... [more]
A0A1Z5K576_FISSO1.760e-11140.27DNA polymerase alpha subunit B n=1 Tax=Fistulifera... [more]
A0A7S2FH66_9STRA6.110e-10638.78DNA polymerase alpha subunit B n=1 Tax=Dictyocha s... [more]
A0A7S4EDL8_9STRA3.530e-10538.53DNA polymerase alpha subunit B n=1 Tax=Pelagomonas... [more]
A0A7S2F9H8_9STRA1.860e-10350.00DNA polymerase alpha subunit B n=1 Tax=Florenciell... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007185DNA polymerase alpha/delta/epsilon, subunit BPFAMPF04042DNA_pol_E_Bcoord: 315..557
e-value: 2.6E-36
score: 125.0
NoneNo IPR availableGENE3D3.60.21.60coord: 291..494
e-value: 6.6E-38
score: 132.0
coord: 502..623
e-value: 1.5E-22
score: 81.8
IPR016722DNA polymerase alpha, subunit BPIRSFPIRSF018300DNA_pol_alpha_2coord: 7..623
e-value: 8.8E-115
score: 382.4
IPR016722DNA polymerase alpha, subunit BPANTHERPTHR23061DNA POLYMERASE 2 ALPHA 70 KDA SUBUNITcoord: 5..613

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18981contigH-elongata_contig18981:1090..6408 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18981.5228.1mRNA_H-elongata_contig18981.5228.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18981 997..6916 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18981.5228.1 ID=prot_H-elongata_contig18981.5228.1|Name=mRNA_H-elongata_contig18981.5228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=624bp
MESWTGFEAEVAKNKAAVTSGAATPSASRNMSPPSATRSKTPAIVTPRLG
GQRVVHKMTSNDLRSSPPSVGAKRPMPPLSSPEPTAKSKIARQEGYGSGL
SPASVQSPTSLVRVVYANRTNAGQKIASFNSALGLREQAVPPSPRRAGTR
CDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGEVT
PVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRE
LRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQH
GPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGP
FVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDL
PTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIP
KSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGG
NRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVP
SKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEEL
ADKPEATMPHDVVKRTCVEIRRI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007185DNA_pol_a/d/e_bsu
IPR016722DNA_pol_alpha_bsu