mRNA_H-elongata_contig189731.5225.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189731.5225.1
Unique NamemRNA_H-elongata_contig189731.5225.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: D7FT85_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT85_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 8.730e-33
Identity = 63/78 (80.77%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 WQCLVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQVLLLWDRLLGYDSLELLPTLAAAVLLFRADLVMQV 234
            ++ LVQRHHP+LV KL QLG+QPLQLAMPWIQFGFVT+LEADQVLLLWDRLLGYDSL+LL  LAA+VL+FRA LV+QV
Sbjct:  523 FESLVQRHHPRLVRKLLQLGLQPLQLAMPWIQFGFVTYLEADQVLLLWDRLLGYDSLDLLSVLAASVLVFRAKLVLQV 600          
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: A0A6H5JP51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP51_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.030e-28
Identity = 62/90 (68.89%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   10 LVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQ---------------VLLLWDRLLGYDSLELLPTLAAAVLLFRADLVMQV 234
            L +RHHP+LV KL QLGVQPLQLAMPWIQFGFVT+LEADQ               VLLLWDRLLGYDSL+LL  LAA+VL+FRA LV+QV
Sbjct:  405 LFERHHPRLVRKLLQLGVQPLQLAMPWIQFGFVTYLEADQASLCTTACSSSPCDLVLLLWDRLLGYDSLDLLSVLAASVLVFRAKLVLQV 494          
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: A0A836CJW0_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.610e-21
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   10 LVQRHHPQLVHKLRQLGVQ-PLQLAMPWIQFGFVTFLEADQVLLLWDRLLGYDSLELLPTLAAAVLLFRADLVM 228
            L++ HHPQL+ KL +LG+Q PL+LAMPWIQFGFV +LE  +VL LWDR+L YDSL LLP LAAAV +FR+  V+
Sbjct:  506 LLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVL 579          
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: A0A7S2CS56_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CS56_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.040e-20
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   10 LVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQVLLLWDRLLGYDSLELLPTLAAAVLLFRADLVM 228
            L+Q H P+L   L Q G+ PL +A+PW+QFGFV+ L+  +V+ LWDRLLGYD L LLP  AA+V LFRA  VM
Sbjct:   15 LLQCHDPRLFFHLLQNGIHPLHIALPWMQFGFVSLLQPVEVMALWDRLLGYDDLLLLPVFAASVFLFRAQTVM 87          
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: A0A0S7M2J4_9TELE (TBC19 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7M2J4_9TELE)

HSP 1 Score: 87.0 bits (214), Expect = 3.840e-20
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   10 LVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQVLLLWDRLLGYDSLELLPTLAAAVLLFRADLVMQV 234
            L+Q H PQL + LRQ+G QPL++A  W+   F  +L  DQ+LLLWDR+LGYDSLE++  LAAAV  FRA+ +M+V
Sbjct:   34 LLQTHLPQLFYHLRQIGAQPLRIAFKWMVRAFSGYLSTDQLLLLWDRILGYDSLEVVAVLAAAVFAFRAENLMEV 108          
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: Q4S458_TETNG ((spotted green pufferfish) hypothetical protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4S458_TETNG)

HSP 1 Score: 92.4 bits (228), Expect = 4.140e-20
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 WQCLVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQVLLLWDRLLGYDSLELLPTLAAAVLLFRADLVMQVR 237
            ++CL+Q + PQL + LRQLG QPL++A  WI   F  +L  DQ+L+LWDR+LGYDSLE++  LAAAV  FRA+ +M+VR
Sbjct:  437 FECLLQTYLPQLFYHLRQLGAQPLRIAFKWIVRAFSGYLSTDQLLILWDRILGYDSLEIVAILAAAVFAFRAENLMEVR 515          
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: A0A078AXN6_STYLE (Tbc1 domain family member 19-like n=3 Tax=Oxytrichidae TaxID=57506 RepID=A0A078AXN6_STYLE)

HSP 1 Score: 90.9 bits (224), Expect = 1.480e-19
Identity = 38/74 (51.35%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   10 LVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQVLLLWDRLLGYDSLELLPTLAAAVLLFRADLVMQ 231
            L+Q   P++ + L QLG+QPL++A PWI + FV +LE DQ+ L+WDR+LG++SLE+LP L+AA+ +FRA+L++ 
Sbjct:  463 LLQMFEPEVCYHLNQLGIQPLKIAFPWIFYAFVGYLEVDQIYLVWDRILGFESLEILPILSAAIFVFRANLILN 536          
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: F0YBG1_AURAN (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBG1_AURAN)

HSP 1 Score: 89.7 bits (221), Expect = 1.590e-19
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   10 LVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQVLLLWDRLLGYDSLELLPTLAAAVLLFRAD 219
            LV  +HP+L   L Q+GV PL +A+PWIQFGFV  L+ DQVLLLWDR+LG++ L LLP LAAA+ ++R++
Sbjct:  248 LVIENHPKLFFYLVQIGVDPLAVALPWIQFGFVGLLDVDQVLLLWDRILGFEDLSLLPILAAAIFVYRSE 317          
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: H2UKV9_TAKRU (Rab-GAP TBC domain-containing protein n=5 Tax=Tetraodontidae TaxID=31031 RepID=H2UKV9_TAKRU)

HSP 1 Score: 90.5 bits (223), Expect = 1.910e-19
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 WQCLVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQVLLLWDRLLGYDSLELLPTLAAAVLLFRADLVMQV 234
            ++CL+Q + PQL + LRQ+G QPL++A  WI   F  +L  DQ+LLLWDR+LGYDSLE++  LAAAV  FRA+ +M+V
Sbjct:  404 FECLLQTYLPQLFYHLRQVGAQPLRIAFKWIVRAFSGYLSTDQLLLLWDRILGYDSLEIVAVLAAAVFAFRAENLMEV 481          
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Match: A0A8J2WGK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WGK4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.950e-19
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   10 LVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQVLLLWDRLLGYDSLELLPTLAAAVLLFRADLVMQ 231
            LV  HHP+L   L Q+GV PL +A+PWIQFGFV  L+ +QVLLLWDRLLG++ L LL  LAAA+ ++R++ ++Q
Sbjct:  420 LVIEHHPRLFFYLVQVGVDPLAIALPWIQFGFVGLLDVEQVLLLWDRLLGFEDLALLSVLAAAIFVYRSEKLLQ 493          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189731.5225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT85_ECTSI8.730e-3380.77Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JP51_9PHAE2.030e-2868.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJW0_9STRA2.610e-2164.86Rab-GAP TBC domain-containing protein n=1 Tax=Trib... [more]
A0A7S2CS56_9STRA3.040e-2057.53Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0S7M2J4_9TELE3.840e-2056.00TBC19 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
Q4S458_TETNG4.140e-2055.70(spotted green pufferfish) hypothetical protein n=... [more]
A0A078AXN6_STYLE1.480e-1951.35Tbc1 domain family member 19-like n=3 Tax=Oxytrich... [more]
F0YBG1_AURAN1.590e-1958.57Rab-GAP TBC domain-containing protein (Fragment) n... [more]
H2UKV9_TAKRU1.910e-1955.13Rab-GAP TBC domain-containing protein n=5 Tax=Tetr... [more]
A0A8J2WGK4_9STRA1.950e-1956.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189731contigH-elongata_contig189731:291..964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue9.7e-28
Seed eggNOG ortholog2880.D7FT85
Preferred nameTBC1D19
GOsGO:0003674,GO:0005096,GO:0008047,GO:0008150,GO:0030234,GO:0030695,GO:0043085,GO:0043087,GO:0043547,GO:0044093,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.GTPase activator activity
EggNOG OGs28K1A@1,2QSFR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930085.6915143-CDS-H-elongata_contig189731:290..4011622930085.6915143-CDS-H-elongata_contig189731:290..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189731 291..401 -
1691679274.7996552-CDS-H-elongata_contig189731:290..4011691679274.7996552-CDS-H-elongata_contig189731:290..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189731 291..401 -
1622930085.7230613-CDS-H-elongata_contig189731:835..9641622930085.7230613-CDS-H-elongata_contig189731:835..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189731 836..964 -
1691679274.810327-CDS-H-elongata_contig189731:835..9641691679274.810327-CDS-H-elongata_contig189731:835..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189731 836..964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189731.5225.1prot_H-elongata_contig189731.5225.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189731 291..964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189731.5225.1

>prot_H-elongata_contig189731.5225.1 ID=prot_H-elongata_contig189731.5225.1|Name=mRNA_H-elongata_contig189731.5225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
WQCLVQRHHPQLVHKLRQLGVQPLQLAMPWIQFGFVTFLEADQVLLLWDR
LLGYDSLELLPTLAAAVLLFRADLVMQVR*
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mRNA from alignment at H-elongata_contig189731:291..964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189731.5225.1 ID=mRNA_H-elongata_contig189731.5225.1|Name=mRNA_H-elongata_contig189731.5225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=674bp|location=Sequence derived from alignment at H-elongata_contig189731:291..964- (Himanthalia elongata Himel1 dioecious)
TGGCAGTGTCTCGTGCAACGACATCACCCGCAGCTGGTTCACAAGCTACG CCAGCTGGGGGTACAGCCGCTGCAGTTGGCCATGCCGTGGATACAGTTCG GGTTCGTGACTTTCCTCGAGGCGGACCAGGTAATTGCAGTGCGATGGTTC TCCGTTACTCCCGCGCGCGCGAGTTGGATGTGTAATTTACCAGCGGCAAT GAAATCGCCGTGCCCAACCCGGTGGGTCGAGCGTTGCGCCTGACCTCTTT CCAACGAATTCGAACAGAGGTTTCGTGGACAACGGTGGTGGAAGGCATGT TTGGAGGCGGGCAACGTTTTGGTAGCTTTACCAAGAAAACATTACGAGGA AGGGAATCAGTGGTGTATAGCGTTGTTCGAGGGTCACCTGTTTGGGGCAG AACGCTCCTGGCGACAAAATGAAAATTCGAAAGAGCGCTGTGTTCGAGAG AGAACTGCCGGAAGGTTCGAGATCCAGGTCTTCCAAGCACCGTTTCTTTG CTTGTGCCCATACACCTCCGATTGTGGTAATCTGTATGTACCACCGCTCG TTGCCCATTGAAGGTGTTGCTGCTATGGGATCGTCTGCTGGGATACGACT CTCTCGAACTTCTGCCGACTCTGGCCGCGGCTGTGTTGCTCTTCAGGGCC GACTTGGTGATGCAAGTGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig189731:291..964-

>mRNA_H-elongata_contig189731.5225.1 ID=mRNA_H-elongata_contig189731.5225.1|Name=mRNA_H-elongata_contig189731.5225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig189731:291..964- (Himanthalia elongata Himel1 dioecious)
TGGCAGTGTCTCGTGCAACGACATCACCCGCAGCTGGTTCACAAGCTACG
CCAGCTGGGGGTACAGCCGCTGCAGTTGGCCATGCCGTGGATACAGTTCG
GGTTCGTGACTTTCCTCGAGGCGGACCAGTGGCAGTGTCTCGTGCAACGA
CATCACCCGCAGCTGGTTCACAAGCTACGCCAGCTGGGGGTACAGCCGCT
GCAGTTGGCCATGCCGTGGATACAGTTCGGGTTCGTGACTTTCCTCGAGG
CGGACCAGGTGTTGCTGCTATGGGATCGTCTGCTGGGATACGACTCTCTC
GAACTTCTGCCGACTCTGGCCGCGGCTGTGTTGCTCTTCAGGGCCGACTT
GGTGATGCAAGTGAGGTGAGTGTTGCTGCTATGGGATCGTCTGCTGGGAT
ACGACTCTCTCGAACTTCTGCCGACTCTGGCCGCGGCTGTGTTGCTCTTC
AGGGCCGACTTGGTGATGCAAGTGAGGTGA
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