mRNA_H-elongata_contig18969.5223.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18969.5223.1
Unique NamemRNA_H-elongata_contig18969.5223.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18969.5223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18969contigH-elongata_contig18969:3487..6687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1382
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18969.5223.1prot_H-elongata_contig18969.5223.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18969 4476..6591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930084.1518238-UTR-H-elongata_contig18969:3486..44751622930084.1518238-UTR-H-elongata_contig18969:3486..4475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18969 3487..4475 -
1691679274.7394385-UTR-H-elongata_contig18969:3486..44751691679274.7394385-UTR-H-elongata_contig18969:3486..4475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18969 3487..4475 -
1622930085.3891747-UTR-H-elongata_contig18969:6591..66871622930085.3891747-UTR-H-elongata_contig18969:6591..6687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18969 6592..6687 -
1691679274.7785027-UTR-H-elongata_contig18969:6591..66871691679274.7785027-UTR-H-elongata_contig18969:6591..6687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18969 6592..6687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930084.1615486-CDS-H-elongata_contig18969:4475..44821622930084.1615486-CDS-H-elongata_contig18969:4475..4482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18969 4476..4482 -
1691679274.7538245-CDS-H-elongata_contig18969:4475..44821691679274.7538245-CDS-H-elongata_contig18969:4475..4482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18969 4476..4482 -
1622930084.796878-CDS-H-elongata_contig18969:4736..49561622930084.796878-CDS-H-elongata_contig18969:4736..4956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18969 4737..4956 -
1691679274.7624142-CDS-H-elongata_contig18969:4736..49561691679274.7624142-CDS-H-elongata_contig18969:4736..4956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18969 4737..4956 -
1622930085.3785653-CDS-H-elongata_contig18969:6521..65911622930085.3785653-CDS-H-elongata_contig18969:6521..6591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18969 6522..6591 -
1691679274.7706685-CDS-H-elongata_contig18969:6521..65911691679274.7706685-CDS-H-elongata_contig18969:6521..6591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18969 6522..6591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18969.5223.1

>prot_H-elongata_contig18969.5223.1 ID=prot_H-elongata_contig18969.5223.1|Name=mRNA_H-elongata_contig18969.5223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MRELLQAGAEPLAAVPARNDISFSDVRYRAETAASGVLPPEEKLPLGVQP
LHKGTKENILDDPLLLELRRNTSPPEATQRPRRSPSIKAPSSKKKLLT*
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mRNA from alignment at H-elongata_contig18969:3487..6687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18969.5223.1 ID=mRNA_H-elongata_contig18969.5223.1|Name=mRNA_H-elongata_contig18969.5223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3201bp|location=Sequence derived from alignment at H-elongata_contig18969:3487..6687- (Himanthalia elongata Himel1 dioecious)
AGGGACCTTCTCAACGCCGGAGCGGACCTGGAAGCGATCACTGACGCGGG
AGAGACCCCATTGGCCCTCGCCGGGCTGAGCGGGAACTTCGAGGTCATGC
GCGAACTGCTGCAAGCTGGAGCCGAGCCCCTCGCGGCCGTGCCCGCCAGG
AACGACATCTCGTTTACAACGAAGGCGTCATCGCTTCAGGACGAGGAGGT
TGCGAGCATTCCCGAGTTGTGGAGGTGCGTTCTCACATTACCCTTCTGCG
TTGTACCATACCTCAATGTTTTGTGTTACCTGCACACGGATGTACGTATA
GGCTGCTCTTGATGGAATGCTGTGTACGTAGGCTTGAAAATAAAAAGAAA
AAATCACACGTGACACAAGTATACAGACTAGTTTGTGAATCCTGCTGACC
GCTTACGGCGTCGTTGAAAGCCCGACGCAGTGTCGACTTGGGTCCAGTGA
TCAAGAACGCCTGATGTGTAGTGTAAACCCAAGCGAAATCAAGCGGCAAT
CAACGACGCGATCAGCCCCTTTTCCTTGACCATGCTTGTGGCCCCGTGAG
CACTTATATAGCTTAATTCCCCACGTATCACTGAAGTATTGTTTTATTGC
ATCTCCGACCTCCGTAATCAATACCTCTTTGTTCCTTGCCTGATGACAAA
TTATATTAATCGGGGACCAAAATCTCGTTGGAGATCTTGGCCAGCGATGA
AATATGTACCATAAAACGTATACCCGATTTTCACGAGAGCTGTGTTACGT
CCCCTGGACTACTTCATGGATGATACAACAAAGATGTGGATGTTCGGAGG
ATTTACATTTAGTTCACTTGTTTCAAAAGAAAAATATGCGAAATGAAAAA
AAAGCGGTACAATTTATACCGGTTCACAATTATGTACGTGCCACTATAAA
CAGAGTATAGTAACCGGTATAAATTGTACCGCGTAACGTTTCTTTGCAGT
ATCCGGTCGTACATAAAATTGTCGGTTGACAAGATTGAAGCCCCTTGACA
GATGATTCAAGGACACATCCCTACTCTAAAACTAATATATTTTACAGAAC
GACGCCTTGACGCACTGTCAAGAACCTCTCCCCCGAAAACTATGGCCGTA
CATACCCCGGCGGTGTTTCATATACCTTAAAGGAGTATATCCCCCCCCCC
CCCCCCCCTTCATCCCCCGCCCTATATTACCGTTACATCTTTTTAAACCA
GTAAAACTGGGGGACTTTAGGATCTTGGCCCACGCATCCTCCGGGGGCCA
GGCCCACTGTATGTTTTTTACATGAATTATTGCCGATGGGCAATCGTCCC
TCTCCACTTAGCTAAAGGTAACGCATATTATTTTATTTTCTGTCATTATC
CAGTTTACACCAGTTTTTCTTAACCCACCCCCCAATGAAGTCATTCCAAC
CCTCCGAATATCCCCGCCTTCTTAGCACTGTGAGAGGTGCAAAGGCCACG
TTTTATCCACCAATATAGCTACAACCTTCGTCTGGCTGATCCATGATTTA
ACATATACACCATATGCGAGCAGGGGTTATGGTTTATGGTTCAAGCACAA
AAAGGACATGGAATATTCCACTCTTCCGTGTAAAGTTGCCAGTTGACAAG
AGTTGAACCCCTTGACAGACGCGTCAAGAACACCTCCCAATTCTAAAACT
AGAATACTTTCCAAAAATACGCCTTGACGCACTGTCAAGAACCTGTCAAC
CGACAACTATGCGCCGTGTGTGTTCCTCACAGCGACGTACGCTACAGGGC
GGAAACCGCAGCTTCGGGGGTGCTCCCACCAGAAGAGAAATTGCCCCTTG
GCGTTCAACCCCTGCACAAGGGAACAAAGGAGAACATATTGGACGACCCC
CTGCTGTTGGAGTTGCGGCGCAACACATCACCGCCAGAGGCCACCCAAAG
ACCGAGGCGCAGTCCGTCCATCAAGGCACCCTCCTCCAAGAAGAAGCTGC
TGTGTGCCAATGGAGAGCATCGGGTCATACGCGAACAACACAACTGGGAC
CATAGTCGAGAGGAGCAGCCACAGAAATAGACGCAAAATTCGATCGGTCC
CGTCTGGGGTGGAGGCTCAAGAGGAGAGCACCCTTGGTTTGCGTCGGATT
CAAATTGAGCCTTACGCTGAGCAGCCCCGAGGCGGGCGTATCGAGGAATA
TCGAGGAATAGGTGCCGTTCACACCTAGCACGACGTGATGCGCGATGCCT
CGAAGGACCTGATCTAGCACTCACTGCCGATCGCGGTGCTGTAGACGGTT
GCGCTTTGTAATTACATGCATGTCCGTGTAGTTGTGTGTGTGTGTCTCCT
GCTCCAATAGTTTAGGCCTCTTTCTTCTCGGCCTTTATTTTTATGTCTTT
TATATCATCCCTTGCATGCTTAAAACGTGCTTTTAACACTCAAATTTTAC
TGGCTGCTGGAGAGTAGCGCACACTCTTGAGGCAGGGCAGGGGGTCTCGA
AGAACAGGTTTATCGTCCAGGATGTGTGCGCCATATTTGTATTTTGAAAA
CGATACGGAGTTTTGAGAGAAATAATCCACGTTTGTTCTGTGTGTGTGTG
TGTGTGTTTGTGTATTTATTAAACTGCAAATAACCGCGCAATCCGGCCCT
GTCGTCCTAGTCCTTCTATGCCATTTGTATTGATCCTCCTAGGGGGGATC
AATGATGTGTGTGTGTTTGTAGGGCGCAGAGGAATGAAGAGGGCTCTAGT
ATACACACTGATGATGTTGTTGTGGTGCATGAAGCTCAAGGGACTATAAA
ATTGCGAGTGAGTGTAATTGTAACATTATTTTTATTTAAAAGATGTTGTG
TGCACGCAATTTTGGAGCAGACTTTGATTATTGAAATGTCTAGATATTTC
AAATCTGGACTTTCGCTGAGGACTGACCTTGGCGTGGTAATCTGATAAAT
AATTCCCTCTAGTGAGTAAAATAAAAGACGTTACATGCCGACGTCATGAT
GAGAAGATTTGGGTTTTGTGAATCAGGAAATTATCGCAGGGCGCGTGTTG
TGCTTGTTTTGTTTTTTTGGTCTCAGTTCGGGTTGTGTACAGTACTCCTG
TGTTGAAAAAGCAACAAAAAAAATCAAAACTCAAACCATTCCTCATTATT
AAACGAGCCGCAGCAACAAGTGCCGAACCTGCCTCTCAAAAGAAAAAAGA
CTCGACGTGAACATGCATGATCGGGACAGATGGGTCGACCCCCAATCAGG
A
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Coding sequence (CDS) from alignment at H-elongata_contig18969:3487..6687-

>mRNA_H-elongata_contig18969.5223.1 ID=mRNA_H-elongata_contig18969.5223.1|Name=mRNA_H-elongata_contig18969.5223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig18969:3487..6687- (Himanthalia elongata Himel1 dioecious)
ATGCGCGAACTGCTGCAAGCTGGAGCCGAGCCCCTCGCGGCCGTGCCCGC
CAGGAACGACATCTCGTTTAATGCGCGAACTGCTGCAAGCTGGAGCCGAG
CCCCTCGCGGCCGTGCCCGCCAGGAACGACATCTCGTTTAGCGACGTACG
CTACAGGGCGGAAACCGCAGCTTCGGGGGTGCTCCCACCAGAAGAGAAAT
TGCCCCTTGGCGTTCAACCCCTGCACAAGGGAACAAAGGAGAACATATTG
GACGACCCCCTGCTGTTGGAGTTGCGGCGCAACACATCACCGCCAGAGGC
CACCCAAAGACCGAGGCGCAGTCCGTCCATCAAGGCACCCTCCTCCAAGA
AGAAGCTGCTGCGACGTACGCTACAGGGCGGAAACCGCAGCTTCGGGGGT
GCTCCCACCAGAAGAGAAATTGCCCCTTGGCGTTCAACCCCTGCACAAGG
GAACAAAGGAGAACATATTGGACGACCCCCTGCTGTTGGAGTTGCGGCGC
AACACATCACCGCCAGAGGCCACCCAAAGACCGAGGCGCAGTCCGTCCAT
CAAGGCACCCTCCTCCAAGAAGAAGCTGCTGACCTGAGACCTGA
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