mRNA_H-elongata_contig189662.5221.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189662.5221.1
Unique NamemRNA_H-elongata_contig189662.5221.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: A0A835ZG43_9STRA (Dihydrodipicolinate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG43_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.160e-34
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 VREPVKQVDFGVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI 249
            +R+   Q  FGVPE+YL GHAFH YSLRS DGT EFQFRHNVCGRRMYAEGT DAVEFL ++ +S ++KRVYNM+DVL+ GGI
Sbjct:  199 IRDAPGQKAFGVPEEYLGGHAFHMYSLRSGDGTVEFQFRHNVCGRRMYAEGTADAVEFLARQMASNAQKRVYNMIDVLKMGGI 281
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BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: D8LDG1_ECTSI (Dihydrodipicolinate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG1_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.270e-34
Identity = 61/83 (73.49%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 VREPVKQVDFGVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI 249
            VR+   Q+ FGVPE++L GHAFHTYSL+S+DGT EFQFRHNVCGR MYAEGT DAVEFL  KA S ++KRVYNM+DVLREGG+
Sbjct:  251 VRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 333
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BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: A0A0V0I0S4_SOLCH (Putative 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic-like n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0I0S4_SOLCH)

HSP 1 Score: 114 bits (286), Expect = 1.350e-29
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 VREPVKQVDF-GVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI 249
            +R+PV+Q++  GVPE+YL GHAFH Y L S DGT  F+F+HNVCGR +YAEGTVDA+ FL KK     EKR+Y+M+DVLREG +
Sbjct:  180 IRDPVQQIEMVGVPEEYLLGHAFHMYHLTSPDGTVSFEFQHNVCGRSIYAEGTVDAILFLAKKVKLKEEKRIYDMIDVLREGNM 263
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BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: A0A1U8FAN3_CAPAN (4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic-like n=4 Tax=Capsicum TaxID=4071 RepID=A0A1U8FAN3_CAPAN)

HSP 1 Score: 115 bits (287), Expect = 3.670e-29
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 VREPVKQVDF-GVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI 249
            +R+PV+QV+  GVPE+YL GHAFH Y L S DGT  F+F+HNVCGR +YAEGTVDA+ FL KK     EKR+Y+M+DVLREG +
Sbjct:  248 IRDPVQQVEMVGVPEEYLLGHAFHMYHLTSPDGTVSFEFQHNVCGRSIYAEGTVDAILFLAKKVKLKEEKRIYDMIDVLREGNM 331
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BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: A0A438GA31_VITVI (4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GA31_VITVI)

HSP 1 Score: 109 bits (273), Expect = 3.760e-29
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 VREPVKQVDF-GVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI 249
            +R+P +QV+  GVPE+YL+GHAFH Y L S D T  F+F+HNVCGR +YAEGT+DA  FL KK    +E+R+YNM+DVLREG +
Sbjct:   44 IRDPKQQVEMVGVPEEYLNGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTIDATIFLAKKIQLGTEQRIYNMIDVLREGNM 127
[Close]
BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: A0A822ZYS7_NELNU (DapB_C domain-containing protein n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A822ZYS7_NELNU)

HSP 1 Score: 110 bits (274), Expect = 4.060e-29
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 VREPVKQVDF-GVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI 249
            +R+P +Q++  GVPE+YL GHAFH Y L S D T  F+F+HNVCGR +YAEGTVDA  FL KK  + ++KR+YNM+DVL+EG +
Sbjct:   59 IRDPKQQIELVGVPEEYLSGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAAIFLAKKVRTKADKRIYNMIDVLQEGNM 142
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BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: A0A6V7QLZ6_ANACO (DapB_C domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7QLZ6_ANACO)

HSP 1 Score: 112 bits (279), Expect = 4.160e-29
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 VREPVKQVDF-GVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREG 243
            +R+P KQ+D  GVPE++L GHAFH Y L S D T  F+F+HNVCGR +YAEGTVDA  FL KK  S ++K++YNM+DVLREG
Sbjct:   41 IRDPKKQLDMVGVPEEHLSGHAFHLYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAAMFLYKKVQSKADKKIYNMIDVLREG 122
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BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: A0A6P5EUP8_ANACO (probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic isoform X2 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EUP8_ANACO)

HSP 1 Score: 114 bits (285), Expect = 4.590e-29
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 VREPVKQVDF-GVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI 249
            +R+P KQ+D  GVPE+YL GHAFH Y L S D T  F+F+HNVCGR +YAEGTVDA  FL KK  S ++K++YNM+DVLREG +
Sbjct:  223 IRDPKKQLDMVGVPEEYLSGHAFHLYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAAMFLYKKVQSKADKKIYNMIDVLREGNM 306
[Close]
BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: A0A6V7QMY1_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7QMY1_ANACO)

HSP 1 Score: 114 bits (285), Expect = 5.950e-29
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 VREPVKQVDF-GVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI 249
            +R+P KQ+D  GVPE+YL GHAFH Y L S D T  F+F+HNVCGR +YAEGTVDA  FL KK  S ++K++YNM+DVLREG +
Sbjct:  237 IRDPKKQLDMVGVPEEYLSGHAFHLYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAAMFLYKKVQSKADKKIYNMIDVLREGNM 320
[Close]
BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Match: U5FL60_POPTR (Uncharacterized protein n=7 Tax=Saliceae TaxID=238069 RepID=U5FL60_POPTR)

HSP 1 Score: 114 bits (285), Expect = 6.390e-29
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 VREPVKQVDF-GVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAEGTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI 249
            +R+P +QV+  GVPE+YL GHAFH Y L S D T  F+F+HNVCGR +YAEGTVDAV FL KK  S ++KR+YNM+DVLREG +
Sbjct:  241 IRDPKEQVELVGVPEEYLSGHAFHLYYLSSPDKTVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIQSKADKRIYNMIDVLREGNM 324
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189662.5221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZG43_9STRA1.160e-3471.08Dihydrodipicolinate reductase n=1 Tax=Tribonema mi... [more]
D8LDG1_ECTSI1.270e-3473.49Dihydrodipicolinate reductase n=1 Tax=Ectocarpus s... [more]
A0A0V0I0S4_SOLCH1.350e-2961.90Putative 4-hydroxy-tetrahydrodipicolinate reductas... [more]
A0A1U8FAN3_CAPAN3.670e-2963.104-hydroxy-tetrahydrodipicolinate reductase 1, chlo... [more]
A0A438GA31_VITVI3.760e-2959.524-hydroxy-tetrahydrodipicolinate reductase 1, chlo... [more]
A0A822ZYS7_NELNU4.060e-2958.33DapB_C domain-containing protein n=2 Tax=Mesangios... [more]
A0A6V7QLZ6_ANACO4.160e-2962.20DapB_C domain-containing protein n=1 Tax=Ananas co... [more]
A0A6P5EUP8_ANACO4.590e-2961.90probable 4-hydroxy-tetrahydrodipicolinate reductas... [more]
A0A6V7QMY1_ANACO5.950e-2961.90Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
U5FL60_POPTR6.390e-2963.10Uncharacterized protein n=7 Tax=Saliceae TaxID=238... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189662contigH-elongata_contig189662:276..1163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue7.8e-28
Seed eggNOG ortholog2880.D8LDG1
KEGG rclassRC00478
KEGG koko:K00215
KEGG ReactionR04198,R04199
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.4-hydroxy-tetrahydrodipicolinate reductase
EggNOG OGs28HEW@1,2QPSY@2759
Ec32 ortholog descriptiondihydrodipicolinate reductase
Ec32 orthologEc-15_000750.1
EC1.17.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930084.0731277-CDS-H-elongata_contig189662:275..3731622930084.0731277-CDS-H-elongata_contig189662:275..373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189662 276..373 +
1691679274.6893015-CDS-H-elongata_contig189662:275..3731691679274.6893015-CDS-H-elongata_contig189662:275..373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189662 276..373 +
1622930084.087373-CDS-H-elongata_contig189662:1009..11631622930084.087373-CDS-H-elongata_contig189662:1009..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189662 1010..1163 +
1691679274.711926-CDS-H-elongata_contig189662:1009..11631691679274.711926-CDS-H-elongata_contig189662:1009..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189662 1010..1163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189662.5221.1prot_H-elongata_contig189662.5221.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189662 276..1163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189662.5221.1

>prot_H-elongata_contig189662.5221.1 ID=prot_H-elongata_contig189662.5221.1|Name=mRNA_H-elongata_contig189662.5221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
VREPVKQVDFGVPEQYLDGHAFHTYSLRSSDGTAEFQFRHNVCGRRMYAE
GTVDAVEFLDKKASSLSEKRVYNMVDVLREGGI*
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mRNA from alignment at H-elongata_contig189662:276..1163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189662.5221.1 ID=mRNA_H-elongata_contig189662.5221.1|Name=mRNA_H-elongata_contig189662.5221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=888bp|location=Sequence derived from alignment at H-elongata_contig189662:276..1163+ (Himanthalia elongata Himel1 dioecious)
GTGCGAGAGCCGGTGAAGCAAGTGGATTTTGGCGTTCCCGAGCAATATCT
GGACGGTCACGCCTTCCACACGTACAGCCTCAGGAGCAGCGATGGAACGT
GAGCAGAGAGGAAGCCTGTCATCGTGCGTGGCAGTGATGAATATAACATC
CAGACACTTCATCAGACATTTGGGAATAATGGTATAGTGGATGCACGGAG
GACGTTCCCGCTCGTCGATTCTTTCGGAACCAACACACTCTTTGAGCAAT
GACTAACGTAACGGATCTGAAAGCATCTCGCCAAGAATATATATATATTT
TATTTTTTTTCAAAAGACGTCGGCGTTGCCTCTGCGTTCGAAGGCATTGG
GGGATGGGGAAAGGAGGGATTGGATTCCCTTCTCCTGAGAGTATGGCGTG
GCCTCTCCTCGAGCACTTGATAGTACCGGATTCTTACGATTGATCAAGAC
GCAATTTTTCGGCCCATGGAAAATATAGACGTAGCTTGTTATTTCATGGC
CATTAAAAAAACCCTGTTTTCCCCCTTCCTTCTCTGATTATTTCCCCCCA
ACCAGTTCACACGGCAAAGGCGAGTAAAGGAGATGCTCCAATAACGATAA
CTTGGTACAATAAGTAATGATACGTTTTGTTATTATTACCATGCCCTAAC
CCGATCTGACCACGTCTCCCGCTTTACCCACTTCCCCCGTCGGATAAAAA
TACCTTCTCGACGACAACTCCTGACAACTCCAAGCGCGGAGTTCCAATTC
CGCCACAATGTGTGTGGGCGGCGTATGTACGCGGAGGGCACGGTCGACGC
GGTGGAGTTCCTAGATAAGAAGGCTTCTTCTCTGTCGGAGAAGCGGGTCT
ACAACATGGTGGACGTGCTTCGAGAAGGCGGCATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig189662:276..1163+

>mRNA_H-elongata_contig189662.5221.1 ID=mRNA_H-elongata_contig189662.5221.1|Name=mRNA_H-elongata_contig189662.5221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig189662:276..1163+ (Himanthalia elongata Himel1 dioecious)
GTGCGAGAGCCGGTGAAGCAAGTGGATTTTGGCGTTCCCGAGCAATATCT
GGACGGTCACGCCTTCCACACGTACAGCCTCAGGAGCAGCGATGGAACGT
GCGAGAGCCGGTGAAGCAAGTGGATTTTGGCGTTCCCGAGCAATATCTGG
ACGGTCACGCCTTCCACACGTACAGCCTCAGGAGCAGCGATGGAACCGCG
GAGTTCCAATTCCGCCACAATGTGTGTGGGCGGCGTATGTACGCGGAGGG
CACGGTCGACGCGGTGGAGTTCCTAGATAAGAAGGCTTCTTCTCTGTCGG
AGAAGCGGGTCTACAACATGGTGGACGTGCTTCGAGAAGGCGGCATTTGA
CGCGGAGTTCCAATTCCGCCACAATGTGTGTGGGCGGCGTATGTACGCGG
AGGGCACGGTCGACGCGGTGGAGTTCCTAGATAAGAAGGCTTCTTCTCTG
TCGGAGAAGCGGGTCTACAACATGGTGGACGTGCTTCGAGAAGGCGGCAT
TTGA
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