mRNA_H-elongata_contig189623.5220.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189623.5220.1
Unique NamemRNA_H-elongata_contig189623.5220.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: A0A6H5L4W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.230e-14
Identity = 32/42 (76.19%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            ELTPC+VQSSV LS+PMDAP++FSTELV+VSW+LRFEF+++P
Sbjct:  151 ELTPCLVQSSVTLSVPMDAPVTFSTELVSVSWSLRFEFVISP 192
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: D8LDZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ5_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.720e-14
Identity = 32/42 (76.19%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            ELTPC+VQSSV LS+PMDAP++FSTELV+VSW+LRFEF+++P
Sbjct:  415 ELTPCLVQSSVTLSVPMDAPVTFSTELVSVSWSLRFEFVISP 456
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: A0A5K1BT31_9MAGN (Uncharacterized protein (Fragment) n=12 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1BT31_9MAGN)

HSP 1 Score: 53.1 bits (126), Expect = 2.230e-8
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            E+   +VQSS   S+PMD P+SFST+ VTV W+LRFEF+  P
Sbjct:    7 EVVADLVQSSFLFSIPMDGPMSFSTQHVTVQWSLRFEFVTTP 48
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: A0A4Y7L5X1_PAPSO (Uncharacterized protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L5X1_PAPSO)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-6
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            E+   +VQ+S   S+PMD P+SFST LV+V WALRFEF   P
Sbjct:  455 EVVADLVQTSFLFSIPMDGPMSFSTPLVSVQWALRFEFFTTP 496
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: A0A200PXU8_9MAGN (Reduced growth phenotype protein 1 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PXU8_9MAGN)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-6
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            E+   +VQ+S   S+PMD P+SFST LV+V WALRFEF   P
Sbjct:  459 EVVADLVQTSFLFSIPMDGPMSFSTPLVSVQWALRFEFFTTP 500
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: A0A4Y7LEU6_PAPSO (Uncharacterized protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7LEU6_PAPSO)

HSP 1 Score: 50.8 bits (120), Expect = 3.810e-6
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            E+   +VQ+S   S+PMD P+SF+T LV+V WALRFEF   P
Sbjct:  508 EVVADLVQTSFLFSIPMDGPMSFATPLVSVQWALRFEFFTTP 549
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: A0A8B8JX49_ABRPR (uncharacterized protein LOC113849892 isoform X1 n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JX49_ABRPR)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            E+   +VQ+S   S+PMD P+SFST+ V+V W LRFEF   P
Sbjct:  473 EVVADLVQTSFLFSIPMDGPMSFSTQHVSVQWVLRFEFFTTP 514
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: K7L119_SOYBN (Uncharacterized protein n=7 Tax=Glycine subgen. Soja TaxID=1462606 RepID=K7L119_SOYBN)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            E+   +VQ+S   S+PMD P+SFST+ V+V W LRFEF   P
Sbjct:  446 EVVADLVQTSFLFSIPMDGPMSFSTQHVSVQWVLRFEFFTTP 487
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: A0A0B2SQ22_GLYSO (Uncharacterized protein n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2SQ22_GLYSO)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            E+   +VQ+S   S+PMD P+SFST+ V+V W LRFEF   P
Sbjct:  309 EVVADLVQTSFLFSIPMDGPMSFSTQHVSVQWVLRFEFFTTP 350
[Close]
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Match: A0A151SNE9_CAJCA (Uncharacterized protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SNE9_CAJCA)

HSP 1 Score: 48.5 bits (114), Expect = 2.500e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP 126
            E+   +VQ+S   S+PMD P+SFST+ V+V W LRFEF   P
Sbjct:  244 EVVADLVQTSFLFSVPMDGPMSFSTQHVSVQWVLRFEFFTTP 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189623.5220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L4W5_9PHAE1.230e-1476.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDZ5_ECTSI3.720e-1476.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5K1BT31_9MAGN2.230e-857.14Uncharacterized protein (Fragment) n=12 Tax=Nympha... [more]
A0A4Y7L5X1_PAPSO1.490e-657.14Uncharacterized protein n=3 Tax=Papaver somniferum... [more]
A0A200PXU8_9MAGN1.490e-657.14Reduced growth phenotype protein 1 n=1 Tax=Macleay... [more]
A0A4Y7LEU6_PAPSO3.810e-654.76Uncharacterized protein n=3 Tax=Papaver somniferum... [more]
A0A8B8JX49_ABRPR1.830e-552.38uncharacterized protein LOC113849892 isoform X1 n=... [more]
K7L119_SOYBN1.830e-552.38Uncharacterized protein n=7 Tax=Glycine subgen. So... [more]
A0A0B2SQ22_GLYSO1.830e-552.38Uncharacterized protein n=1 Tax=Glycine soja TaxID... [more]
A0A151SNE9_CAJCA2.500e-552.38Uncharacterized protein n=1 Tax=Cajanus cajan TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189623contigH-elongata_contig189623:325..450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D8LDZ5
Preferred nameRGP1
KEGG koko:K20477
GOsGO:0000139,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006810,GO:0008150,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0010605,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019222,GO:0019899,GO:0023051,GO:0023056,GO:0031090,GO:0031267,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031984,GO:0032006,GO:0032008,GO:0032045,GO:0032268,GO:0032269,GO:0032588,GO:0032991,GO:0034066,GO:0042147,GO:0042176,GO:0042177,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:1902531,GO:1902533,GO:1903362,GO:1903363,GO:1903939,GO:1904515
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG4469@1,KOG4469@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930084.0262883-CDS-H-elongata_contig189623:324..4501622930084.0262883-CDS-H-elongata_contig189623:324..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189623 325..450 +
1691679274.6749907-CDS-H-elongata_contig189623:324..4501691679274.6749907-CDS-H-elongata_contig189623:324..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189623 325..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189623.5220.1prot_H-elongata_contig189623.5220.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189623 325..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189623.5220.1

>prot_H-elongata_contig189623.5220.1 ID=prot_H-elongata_contig189623.5220.1|Name=mRNA_H-elongata_contig189623.5220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
ELTPCVVQSSVALSLPMDAPISFSTELVTVSWALRFEFIMAP
back to top

mRNA from alignment at H-elongata_contig189623:325..450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189623.5220.1 ID=mRNA_H-elongata_contig189623.5220.1|Name=mRNA_H-elongata_contig189623.5220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig189623:325..450+ (Himanthalia elongata Himel1 dioecious)
GAGTTGACCCCGTGCGTGGTCCAGTCGTCCGTGGCTCTTTCATTGCCCAT
GGACGCGCCGATTTCCTTCTCGACCGAGCTCGTAACCGTGAGCTGGGCGT
TGCGCTTCGAGTTCATAATGGCGCCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig189623:325..450+

>mRNA_H-elongata_contig189623.5220.1 ID=mRNA_H-elongata_contig189623.5220.1|Name=mRNA_H-elongata_contig189623.5220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig189623:325..450+ (Himanthalia elongata Himel1 dioecious)
GAGTTGACCCCGTGCGTGGTCCAGTCGTCCGTGGCTCTTTCATTGCCCAT
GGACGCGCCGATTTCCTTCTCGACCGAGCTCGTAACCGTGAGCTGGGCGT
TGCGCTTCGAGTTCATAATGGCGCCGGAGTTGACCCCGTGCGTGGTCCAG
TCGTCCGTGGCTCTTTCATTGCCCATGGACGCGCCGATTTCCTTCTCGAC
CGAGCTCGTAACCGTGAGCTGGGCGTTGCGCTTCGAGTTCATAATGGCGC
CG
back to top